prot_H-paniculata_contig81642.16190.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig81642.16190.1
Unique Nameprot_H-paniculata_contig81642.16190.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length68
Homology
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BLAST of mRNA_H-paniculata_contig81642.16190.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.410e-6
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0 
Query:   13 FNTKDNPWGEPPAAVVGDRGNISAVRSYFVDLYRE--KRVVSQSLKVVLVGREDTGKT 68
            F   +NPW EPP AVV     ISAV+ YF DL+ E    V  + +KVVLVG+E  GKT
Sbjct:  243 FLVHENPWQEPPEAVVSK--GISAVQEYFTDLFAEGIAPVGRKMIKVVLVGQEGAGKT 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81642.16190.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL98_ECTSI3.410e-651.72LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81642contigH-paniculata_contig81642:247..450 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81642.16190.1mRNA_H-paniculata_contig81642.16190.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig81642 247..452 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig81642.16190.1 ID=prot_H-paniculata_contig81642.16190.1|Name=mRNA_H-paniculata_contig81642.16190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
DEFLVFLEGLDEFNTKDNPWGEPPAAVVGDRGNISAVRSYFVDLYREKRV
VSQSLKVVLVGREDTGKT
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