mRNA_H-paniculata_contig8146.16170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8146.16170.1
Unique NamemRNA_H-paniculata_contig8146.16170.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Match: A0A6H5KDR8_9PHAE (Peptidase_M14 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDR8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.370e-23
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    7 QLSSAAERYGLSHDRTCGVDETGTDVRCEYLILHITDHATLKDDPERPEVFFSGALHGNERVGPTAVMEAAKLMVFGAKCYLDSSAE 267
            Q+ SA  R+GL     C  D +   +RCE  +LHI+DH T+  +PERPEVFFSG LHG+E+VGPTAV+E AKLMV+ A C+ DSSA+
Sbjct:    3 QVYSAQYRFGLRSPGPCSEDGS---IRCEQWVLHISDHNTMAAEPERPEVFFSGCLHGDEQVGPTAVVEMAKLMVYAAVCHADSSAK 86          
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Match: A0A2P4XNG3_9STRA (Peptidase_M14 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNG3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.650e-19
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 ILQLSSAAERYGLSHDRT--CGVD-ETGTDVRCEYLILHITDHATLKDDPERPEVFFSGALHGNERVGPTAVMEAAKLMVFGAKCY 249
            ++Q+S A E YGL + +   C VD ET T   C+  ++H+T+H+TL +DPERPE+F SGALHGNERVGP A +E   L+      Y
Sbjct:   49 VVQVSIAQETYGLPYPKELQCVVDDETKTTEPCKQFVVHLTNHSTLANDPERPEIFISGALHGNERVGPNAAIELVALVAHATSSY 134          
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Match: A0A0P1ASX7_PLAHL (Peptidase_M14 domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ASX7_PLAHL)

HSP 1 Score: 86.3 bits (212), Expect = 1.370e-17
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 ILQLSSAAERYGLSHDRT--CGV-DETGTDVRCEYLILHITDHATLKDDPERPEVFFSGALHGNERVGPTAVMEAAKLMVFGAKCY 249
            ++ +S A E YGL +     C + DET     C++ ++H+T+H+TLK+DPERPEVF SGALHGNER+GP A +E   L+  G   Y
Sbjct:   31 VVHVSIAQETYGLPYPDALDCIINDETKDTAPCQHFVVHLTNHSTLKNDPERPEVFISGALHGNERIGPNAAIELIALVAHGTSKY 116          
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Match: A0A484DSA9_BRELC (Peptidase_M14 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSA9_BRELC)

HSP 1 Score: 84.3 bits (207), Expect = 6.660e-17
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 ILQLSSAAERYGLSHDRTCGV---DETGTDVRCEYLILHITDHATLKDDPERPEVFFSGALHGNERVGPTAVMEAAKLMVFGAKCYLDSSAEARTI 279
            I+Q+S A E YGL + +       DE  T   C+  ++H+T+H+T+ +DP+RPEVF SGALHG+ER+GP A +E   L  +G   Y   S +  T+
Sbjct:  548 IVQVSVAQETYGLPYPKELQCIEDDEFNTLRHCKQYVVHLTNHSTVANDPKRPEVFISGALHGDERIGPNAAIELVALFAYGTSMYSTQSKKQPTV 643          
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Match: A0A3F2RR65_9STRA (Peptidase_M14 domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RR65_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.870e-17
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 ILQLSSAAERYGLSHDRT--CGVDE-TGTDVRCEYLILHITDHATLKDDPERPEVFFSGALHGNERVGPTAVMEAAKLMVFGAKCYLDSS 261
            ++Q+S A E +GL + +   C VD+ T     C+  ++H+T+H+TL +DPERPEVF SGALHGNERVGP A +E   L+      Y   S
Sbjct:   52 VVQVSIAQETFGLPYPKELQCQVDDDTHATEPCKQFVVHLTNHSTLANDPERPEVFISGALHGNERVGPAAAIELVALVAHATSVYATDS 141          
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Match: A0A421GUW1_9STRA (Peptidase_M14 domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GUW1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.090e-17
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 ILQLSSAAERYGLSHDRT--CGVDE-TGTDVRCEYLILHITDHATLKDDPERPEVFFSGALHGNERVGPTAVMEAAKLMVFGAKCYLDSS 261
            ++Q+S A E +GL + +   C VD+ T     C+  ++H+T+H+TL +DPERPEVF SGALHGNERVGP A +E   L+      Y   S
Sbjct:  538 VVQVSIAQETFGLPYPKELQCQVDDDTHATEPCKQFVVHLTNHSTLANDPERPEVFISGALHGNERVGPAAAIELVALVAHATSVYATDS 627          
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Match: A0A225WZZ5_9STRA (Peptidase_M14 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZZ5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.090e-16
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 ILQLSSAAERYGLSHDRT--CGVD-ETGTDVRCEYLILHITDHATLKDDPERPEVFFSGALHGNERVGPTAVMEAAKLMVFGAKCY 249
            ++Q+S A E Y L + R   C VD ET     C+  ++H+T+H+TL +DPERPEVF SGALHGNERVGP A +E   L+      +
Sbjct:   46 VVQVSVAQETYSLPYPRELQCIVDDETQAIAPCKQFVVHLTNHSTLANDPERPEVFISGALHGNERVGPNAAIELVALVAHATSSF 131          
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Match: A0A6G0SP24_9STRA (Peptidase_M14 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0SP24_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.220e-16
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 ILQLSSAAERYGLSH--DRTCGVDE-TGTDVRCEYLILHITDHATLKDDPERPEVFFSGALHGNERVGPTAVMEAAKLMVFGAKCYLDSSAEARTI 279
            ++Q+S A E YGL +  +  C VD+ T     C+  ++H+T+H+TL  DP+RPEVF SGALHGNERVGP A +E   L       Y    +   T+
Sbjct:   51 VVQVSIAQETYGLPYPDELQCIVDDGTKATEPCKQFVVHLTNHSTLASDPQRPEVFISGALHGNERVGPNAAIELVALFAHATSRYAKDDSTKPTV 146          
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Match: A0A6A3ZRD3_9STRA (Peptidase_M14 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3ZRD3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.270e-16
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 ILQLSSAAERYGLSH--DRTCGVDE-TGTDVRCEYLILHITDHATLKDDPERPEVFFSGALHGNERVGPTAVMEAAKLMVFGAKCYLDSSAEARTI 279
            ++Q+S A E YGL +  +  C VD+ T     C+  ++H+T+H+TL  DP+RPEVF SGALHGNERVGP A +E   L       Y    +   T+
Sbjct:  275 VVQVSIAQETYGLPYPDELQCIVDDGTKATEPCKQFVVHLTNHSTLASDPQRPEVFISGALHGNERVGPNAAIELVALFAHATSRYAKDDSTKPTV 370          
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Match: A0A662XDP2_9STRA (Peptidase_M14 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDP2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.760e-16
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 ILQLSSAAERYGLSHDRTCGV---DETGTDVRCEYLILHITDHATLKDDPERPEVFFSGALHGNERVGPTAVMEAAKLMVFGAKCY 249
            ++ +S A E Y L +         DE  T   C+  ++H+T+H+TL +DPERPEVF SGALHGNERVGP A +E   LM   A  Y
Sbjct:   54 VVHVSVAQETYDLPYPEELECMDDDEAETVAPCKQFVVHLTNHSTLANDPERPEVFISGALHGNERVGPAAAIELIALMAHSASAY 139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8146.16170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDR8_9PHAE5.370e-2356.32Peptidase_M14 domain-containing protein n=2 Tax=Ec... [more]
A0A2P4XNG3_9STRA1.650e-1948.84Peptidase_M14 domain-containing protein n=1 Tax=Ph... [more]
A0A0P1ASX7_PLAHL1.370e-1747.67Peptidase_M14 domain-containing protein n=1 Tax=Pl... [more]
A0A484DSA9_BRELC6.660e-1741.67Peptidase_M14 domain-containing protein n=1 Tax=Br... [more]
A0A3F2RR65_9STRA8.870e-1745.56Peptidase_M14 domain-containing protein n=1 Tax=Ph... [more]
A0A421GUW1_9STRA9.090e-1745.56Peptidase_M14 domain-containing protein n=2 Tax=Ph... [more]
A0A225WZZ5_9STRA4.090e-1647.67Peptidase_M14 domain-containing protein n=1 Tax=Ph... [more]
A0A6G0SP24_9STRA4.220e-1642.71Peptidase_M14 domain-containing protein n=4 Tax=Ph... [more]
A0A6A3ZRD3_9STRA4.270e-1642.71Peptidase_M14 domain-containing protein n=1 Tax=Ph... [more]
A0A662XDP2_9STRA5.760e-1646.51Peptidase_M14 domain-containing protein n=2 Tax=No... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8146contigH-paniculata_contig8146:147..1093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue3.5e-19
Seed eggNOG ortholog2880.D7FNB3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc carboxypeptidase
EggNOG OGs28MYZ@1,2QUHR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.5823805-CDS-H-paniculata_contig8146:146..2901622931020.5823805-CDS-H-paniculata_contig8146:146..290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8146 147..290 -
1691481553.850033-CDS-H-paniculata_contig8146:146..2901691481553.850033-CDS-H-paniculata_contig8146:146..290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8146 147..290 -
1622931020.5942147-CDS-H-paniculata_contig8146:940..10931622931020.5942147-CDS-H-paniculata_contig8146:940..1093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8146 941..1093 -
1691481553.860887-CDS-H-paniculata_contig8146:940..10931691481553.860887-CDS-H-paniculata_contig8146:940..1093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8146 941..1093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8146.16170.1prot_H-paniculata_contig8146.16170.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8146 147..1093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8146.16170.1

>prot_H-paniculata_contig8146.16170.1 ID=prot_H-paniculata_contig8146.16170.1|Name=mRNA_H-paniculata_contig8146.16170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
ILQLSSAAERYGLSHDRTCGVDETGTDVRCEYLILHITDHATLKDDPERP
EVFFSGALHGNERVGPTAVMEAAKLMVFGAKCYLDSSAEARTILGSFH*
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mRNA from alignment at H-paniculata_contig8146:147..1093-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8146.16170.1 ID=mRNA_H-paniculata_contig8146.16170.1|Name=mRNA_H-paniculata_contig8146.16170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=947bp|location=Sequence derived from alignment at H-paniculata_contig8146:147..1093- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTACAGTTGTCCTCGGCCGCAGAGCGATACGGACTGTCACATGACAG AACATGCGGCGTGGACGAAACTGGCACAGATGTGAGGTGCGAGTACCTGA TTTTGCACATCACTGACCACGCCACCCTGAAGGACGACCCGGAGAGACCA GAGGTATGGCGTATGTGCGTATACTGAAGTAGGGTTGAATCCCGTATACG CTGGGTTGGTACAACAGCGGGGGCTCCTGTATGCTAAAAACGCACTTTAT CTTGGTTCTCGTTGTTACTGTATTCCCCTCTTAACCTAAATACTGTGTCG TTTTTGTTATTGTCGTACTCTTGTTGGGTCTCTTATAGTGTATAACGAAC ACTTGGAATTACTGTACTGTACTTTGGGCGACCGATTTGTCCTTCGCGCT TCGTAGTGACTACAGCTATGGTGTGTCAACACAGTACAGAAATGAGCTGA GTGTTTTTTCGGGGTGACATGGCTAATGCTGGGGATGGTGTTGGCTGTGT GTACGTCCTTTTCTTCGTTAGTATCCAGTGCTGTTACATTATGATACGAT TTCTTGTGGAATGCAATAGCTTCAAGGGACCTAGCATTTGACTTCTGATT CGTTTCCATCTATCATGTATCGCGGTTTGATAAATACACATATATACAAC ACTTCAGCTCGTGTTTGGATCTCGTCGAAGTGCTCTGCTTATCCTAATGG TTGGATATTTGCCTGCGGGATTTCGTATCCTACGACCGCGTGTCCGAGCG AGTGGACTATAATGTTCAGTAGAAGAAATACGTGTTCTGTGAATGAAATG CAGGTATTCTTCAGCGGGGCTCTACATGGCAACGAGCGAGTAGGACCTAC CGCCGTAATGGAGGCGGCGAAACTCATGGTGTTCGGCGCGAAATGTTATC TTGATTCTTCCGCAGAGGCAAGAACCATATTAGGGTCCTTTCATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8146:147..1093-

>mRNA_H-paniculata_contig8146.16170.1 ID=mRNA_H-paniculata_contig8146.16170.1|Name=mRNA_H-paniculata_contig8146.16170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig8146:147..1093- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTACAGTTGTCCTCGGCCGCAGAGCGATACGGACTGTCACATGACAG
AACATGCGGCGTGGACGAAACTGGCACAGATGTGAGGTGCGAGTACCTGA
TTTTGCACATCACTGACCACGCCACCCTGAAGGACGACCCGGAGAGACCA
GAGATACTACAGTTGTCCTCGGCCGCAGAGCGATACGGACTGTCACATGA
CAGAACATGCGGCGTGGACGAAACTGGCACAGATGTGAGGTGCGAGTACC
TGATTTTGCACATCACTGACCACGCCACCCTGAAGGACGACCCGGAGAGA
CCAGAGGTATTCTTCAGCGGGGCTCTACATGGCAACGAGCGAGTAGGACC
TACCGCCGTAATGGAGGCGGCGAAACTCATGGTGTTCGGCGCGAAATGTT
ATCTTGATTCTTCCGCAGAGGCAAGAACCATATTAGGGTCCTTTCATTAA
GTATTCTTCAGCGGGGCTCTACATGGCAACGAGCGAGTAGGACCTACCGC
CGTAATGGAGGCGGCGAAACTCATGGTGTTCGGCGCGAAATGTTATCTTG
ATTCTTCCGCAGAGGCAAGAACCATATTAGGGTCCTTTCATTAA
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