mRNA_H-paniculata_contig8135.16153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8135.16153.1
Unique NamemRNA_H-paniculata_contig8135.16153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8135.16153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8135contigH-paniculata_contig8135:8624..9359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8135.16153.1prot_H-paniculata_contig8135.16153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8135 8653..9359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.8158069-UTR-H-paniculata_contig8135:8623..86521622931018.8158069-UTR-H-paniculata_contig8135:8623..8652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8135 8624..8652 +
1691481553.0211213-UTR-H-paniculata_contig8135:8623..86521691481553.0211213-UTR-H-paniculata_contig8135:8623..8652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8135 8624..8652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.8297696-CDS-H-paniculata_contig8135:8652..87101622931018.8297696-CDS-H-paniculata_contig8135:8652..8710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8135 8653..8710 +
1691481553.0335062-CDS-H-paniculata_contig8135:8652..87101691481553.0335062-CDS-H-paniculata_contig8135:8652..8710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8135 8653..8710 +
1622931018.8432732-CDS-H-paniculata_contig8135:9114..93591622931018.8432732-CDS-H-paniculata_contig8135:9114..9359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8135 9115..9359 +
1691481553.0454423-CDS-H-paniculata_contig8135:9114..93591691481553.0454423-CDS-H-paniculata_contig8135:9114..9359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8135 9115..9359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8135.16153.1

>prot_H-paniculata_contig8135.16153.1 ID=prot_H-paniculata_contig8135.16153.1|Name=mRNA_H-paniculata_contig8135.16153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MDIGGGGVDAAAAGAPLAIEGASGVNGSTSPQQPHNPLALTVAEAKAAPK
KKKKKKKLASPSSGRSVPPGSGGGSEKKTFNLIDLGDEGDAQWGHDGEQP
A
back to top

mRNA from alignment at H-paniculata_contig8135:8624..9359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8135.16153.1 ID=mRNA_H-paniculata_contig8135.16153.1|Name=mRNA_H-paniculata_contig8135.16153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=736bp|location=Sequence derived from alignment at H-paniculata_contig8135:8624..9359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGAAGCTGTGTTAGATTTGCTGTCGATGGATATTGGGGGTGGTGGA
GTGGATGCCGCAGCGGCGGGAGCACCGCTTGCTATCGGTGAGATGAGGGA
TGATGTCTTTGAGTGATTATATATATTCTTCGATTTTTTTTAACGTCGCG
TCGAGGGTGTGTTGGCATATGTCATATTTCGTATCTTGCTCTGCTCTCTC
AAGGGTTGTTAGAAAGGAACTTTCTGCAGATGGTGGACTTTGTCTTTGTC
GGGGTTTTATTTCGAATATGTTCGTACGTATATCATATGTCCCATTTGCT
TTATCTCTCTGTCTCTCTGTCTCTTTTTGAAATCTGTCGTCGTCGTTGTC
GTCGTTATTTCTTACGTGTGTAATTCTGAACTCTTCCTCTCTCTTTCTCT
TTCGCTGTTATCCCCGAATTGTTTTTTTGACATACAATACAAAACAACCA
ACCAAAACTCGCGGGGGGGTCTGGCGGTGGGGGAGCAACAGAAGGAGCAT
CCGGGGTAAACGGGTCCACGTCGCCTCAGCAGCCGCACAACCCGCTTGCT
CTGACCGTGGCGGAGGCGAAGGCTGCGCCGAAAAAGAAAAAGAAGAAGAA
AAAGTTGGCGTCACCTAGCAGCGGCAGGTCAGTACCACCGGGCAGCGGAG
GTGGTAGCGAAAAAAAGACTTTCAATCTTATCGACCTCGGCGATGAGGGA
GATGCGCAGTGGGGTCACGATGGGGAGCAGCCGGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8135:8624..9359+

>mRNA_H-paniculata_contig8135.16153.1 ID=mRNA_H-paniculata_contig8135.16153.1|Name=mRNA_H-paniculata_contig8135.16153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig8135:8624..9359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATATTGGGGGTGGTGGAGTGGATGCCGCAGCGGCGGGAGCACCGCT
TGCTATCGATGGATATTGGGGGTGGTGGAGTGGATGCCGCAGCGGCGGGA
GCACCGCTTGCTATCGAAGGAGCATCCGGGGTAAACGGGTCCACGTCGCC
TCAGCAGCCGCACAACCCGCTTGCTCTGACCGTGGCGGAGGCGAAGGCTG
CGCCGAAAAAGAAAAAGAAGAAGAAAAAGTTGGCGTCACCTAGCAGCGGC
AGGTCAGTACCACCGGGCAGCGGAGGTGGTAGCGAAAAAAAGACTTTCAA
TCTTATCGACCTCGGCGATGAGGGAGATGCGCAGTGGGGTCACGATGGGG
AGCAGCCGGCGAAGGAGCATCCGGGGTAAACGGGTCCACGTCGCCTCAGC
AGCCGCACAACCCGCTTGCTCTGACCGTGGCGGAGGCGAAGGCTGCGCCG
AAAAAGAAAAAGAAGAAGAAAAAGTTGGCGTCACCTAGCAGCGGCAGGTC
AGTACCACCGGGCAGCGGAGGTGGTAGCGAAAAAAAGACTTTCAATCTTA
TCGACCTCGGCGATGAGGGAGATGCGCAGTGGGGTCACGATGGGGAGCAG
CCGGCG
back to top