mRNA_H-paniculata_contig8124.16145.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8124.16145.1
Unique NamemRNA_H-paniculata_contig8124.16145.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8124.16145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8124contigH-paniculata_contig8124:3005..3871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue9.6e-09
Seed eggNOG ortholog2880.D7FHH1
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size867
Cds size867
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.0837798-CDS-H-paniculata_contig8124:3004..38711622931018.0837798-CDS-H-paniculata_contig8124:3004..3871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8124 3005..3871 -
1691481552.6732967-CDS-H-paniculata_contig8124:3004..38711691481552.6732967-CDS-H-paniculata_contig8124:3004..3871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8124 3005..3871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8124.16145.1prot_H-paniculata_contig8124.16145.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8124 3005..3871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8124.16145.1

>prot_H-paniculata_contig8124.16145.1 ID=prot_H-paniculata_contig8124.16145.1|Name=mRNA_H-paniculata_contig8124.16145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp
IDGDGAQQLFHVYDATLSMSNVKLENGNGTYGGALFGRYADVRCTDCSFF
GNRASEEGGAVTVNESNVSFTGETYCLRNSAGSDGGFLSATVSSFVVFEG
NSIFEDNISDGRGGVIYSYGAEGVKFNGRSRFYNNAAYHSGGAIWSYSTP
LSFSRENSSTEFVNNSVATLFGGALSVSGKKPLTMEASVLFENNSASTGG
AAYMSGPATNSILSRARFVSNSASLDGGALVMNRNIGGVGTDTAEPIMVT
NCTFEDNHALGNGGAMIVASGNVEMSETIFRNNIAGDEH
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mRNA from alignment at H-paniculata_contig8124:3005..3871-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8124.16145.1 ID=mRNA_H-paniculata_contig8124.16145.1|Name=mRNA_H-paniculata_contig8124.16145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at H-paniculata_contig8124:3005..3871- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGATGGAGATGGCGCTCAGCAGTTATTCCATGTGTATGACGCCACGCT
CAGTATGTCAAACGTCAAATTGGAGAACGGTAACGGTACATATGGGGGGG
CCTTGTTCGGGCGCTACGCGGATGTGAGATGTACCGACTGCAGCTTTTTT
GGCAATCGAGCCAGCGAAGAGGGTGGCGCAGTAACGGTGAATGAGTCCAA
TGTTTCCTTCACGGGAGAAACGTATTGTCTGCGGAACAGTGCTGGCAGCG
ATGGAGGTTTCCTTTCGGCGACGGTGAGCTCCTTCGTTGTCTTCGAAGGG
AACTCGATTTTCGAGGACAACATCTCGGATGGGCGAGGGGGGGTAATATA
TAGCTATGGAGCCGAAGGAGTAAAATTTAATGGACGTAGCAGATTCTACA
ACAATGCGGCATATCACTCAGGCGGTGCCATTTGGAGCTATAGCACCCCC
TTGAGCTTCTCCAGGGAGAACAGCTCCACTGAGTTTGTCAACAACAGCGT
GGCGACGCTATTCGGTGGTGCCCTCTCCGTGTCCGGAAAAAAACCGTTAA
CGATGGAGGCAAGTGTCTTGTTTGAAAACAACTCGGCGTCGACAGGTGGG
GCCGCGTACATGTCCGGGCCGGCAACTAATAGCATACTCAGCCGGGCACG
CTTCGTATCAAACTCGGCGAGCCTGGATGGTGGAGCCTTAGTAATGAATC
GTAATATTGGTGGTGTTGGTACTGACACGGCGGAGCCCATTATGGTGACC
AATTGCACTTTTGAGGACAACCATGCATTGGGGAACGGAGGTGCAATGAT
TGTAGCTTCGGGGAATGTGGAAATGAGTGAGACCATCTTCAGGAACAACA
TAGCAGGTGATGAACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig8124:3005..3871-

>mRNA_H-paniculata_contig8124.16145.1 ID=mRNA_H-paniculata_contig8124.16145.1|Name=mRNA_H-paniculata_contig8124.16145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig8124:3005..3871- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGATGGAGATGGCGCTCAGCAGTTATTCCATGTGTATGACGCCACGCT
CAGTATGTCAAACGTCAAATTGGAGAACGGTAACGGTACATATGGGGGGG
CCTTGTTCGGGCGCTACGCGGATGTGAGATGTACCGACTGCAGCTTTTTT
GGCAATCGAGCCAGCGAAGAGGGTGGCGCAGTAACGGTGAATGAGTCCAA
TGTTTCCTTCACGGGAGAAACGTATTGTCTGCGGAACAGTGCTGGCAGCG
ATGGAGGTTTCCTTTCGGCGACGGTGAGCTCCTTCGTTGTCTTCGAAGGG
AACTCGATTTTCGAGGACAACATCTCGGATGGGCGAGGGGGGGTAATATA
TAGCTATGGAGCCGAAGGAGTAAAATTTAATGGACGTAGCAGATTCTACA
ACAATGCGGCATATCACTCAGGCGGTGCCATTTGGAGCTATAGCACCCCC
TTGAGCTTCTCCAGGGAGAACAGCTCCACTGAGTTTGTCAACAACAGCGT
GGCGACGCTATTCGGTGGTGCCCTCTCCGTGTCCGGAAAAAAACCGTTAA
CGATGGAGGCAAGTGTCTTGTTTGAAAACAACTCGGCGTCGACAGGTGGG
GCCGCGTACATGTCCGGGCCGGCAACTAATAGCATACTCAGCCGGGCACG
CTTCGTATCAAACTCGGCGAGCCTGGATGGTGGAGCCTTAGTAATGAATC
GTAATATTGGTGGTGTTGGTACTGACACGGCGGAGCCCATTATGGTGACC
AATTGCACTTTTGAGGACAACCATGCATTGGGGAACGGAGGTGCAATGAT
TGTAGCTTCGGGGAATGTGGAAATGAGTGAGACCATCTTCAGGAACAACA
TAGCAGGTGATGAACACATCGATGGAGATGGCGCTCAGCAGTTATTCCAT
GTGTATGACGCCACGCTCAGTATGTCAAACGTCAAATTGGAGAACGGTAA
CGGTACATATGGGGGGGCCTTGTTCGGGCGCTACGCGGATGTGAGATGTA
CCGACTGCAGCTTTTTTGGCAATCGAGCCAGCGAAGAGGGTGGCGCAGTA
ACGGTGAATGAGTCCAATGTTTCCTTCACGGGAGAAACGTATTGTCTGCG
GAACAGTGCTGGCAGCGATGGAGGTTTCCTTTCGGCGACGGTGAGCTCCT
TCGTTGTCTTCGAAGGGAACTCGATTTTCGAGGACAACATCTCGGATGGG
CGAGGGGGGGTAATATATAGCTATGGAGCCGAAGGAGTAAAATTTAATGG
ACGTAGCAGATTCTACAACAATGCGGCATATCACTCAGGCGGTGCCATTT
GGAGCTATAGCACCCCCTTGAGCTTCTCCAGGGAGAACAGCTCCACTGAG
TTTGTCAACAACAGCGTGGCGACGCTATTCGGTGGTGCCCTCTCCGTGTC
CGGAAAAAAACCGTTAACGATGGAGGCAAGTGTCTTGTTTGAAAACAACT
CGGCGTCGACAGGTGGGGCCGCGTACATGTCCGGGCCGGCAACTAATAGC
ATACTCAGCCGGGCACGCTTCGTATCAAACTCGGCGAGCCTGGATGGTGG
AGCCTTAGTAATGAATCGTAATATTGGTGGTGTTGGTACTGACACGGCGG
AGCCCATTATGGTGACCAATTGCACTTTTGAGGACAACCATGCATTGGGG
AACGGAGGTGCAATGATTGTAGCTTCGGGGAATGTGGAAATGAGTGAGAC
CATCTTCAGGAACAACATAGCAGGTGATGAACAC
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