prot_H-paniculata_contig8115.16136.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8115.16136.1
Unique Nameprot_H-paniculata_contig8115.16136.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length854
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8115.16136.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 365..388
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 262..499
coord: 786..835
coord: 502..637
coord: 607..754
coord: 392..598
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 362..491
e-value: 1.1E-10
score: 43.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 206..339
e-value: 9.9E-8
score: 33.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 601..682
e-value: 6.8E-21
score: 76.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 496..600
e-value: 6.2E-20
score: 73.8
coord: 683..843
e-value: 2.5E-29
score: 104.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 796..820
e-value: 0.71
score: 10.3
coord: 532..560
e-value: 0.022
score: 15.0
coord: 268..296
e-value: 0.013
score: 15.7
coord: 605..633
e-value: 0.011
score: 15.9
coord: 502..526
e-value: 0.37
score: 11.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 422..458
e-value: 0.0063
score: 16.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 636..683
e-value: 8.1E-12
score: 45.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 427..458
e-value: 4.2E-4
score: 18.3
coord: 794..824
e-value: 0.0027
score: 15.8
coord: 268..299
e-value: 4.7E-5
score: 21.3
coord: 605..638
e-value: 2.0E-4
score: 19.3
coord: 674..706
e-value: 6.4E-8
score: 30.3
coord: 639..672
e-value: 2.8E-4
score: 18.9
coord: 532..563
e-value: 0.002
score: 16.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 423..457
score: 9.438
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 672..706
score: 12.321
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 494..528
score: 8.396
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 637..671
score: 11.433
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 564..598
score: 6.796
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 264..298
score: 10.282
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 529..563
score: 10.249
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 788..822
score: 9.295
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 707..742
score: 9.547
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 602..636
score: 9.569
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 459..493
score: 8.605

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8115contigH-paniculata_contig8115:2405..6224 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8115.16136.1mRNA_H-paniculata_contig8115.16136.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8115 1932..6437 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8115.16136.1 ID=prot_H-paniculata_contig8115.16136.1|Name=mRNA_H-paniculata_contig8115.16136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=854bp
MLLARQRARCGILMSKHFNTTARKQQYPLPTTTVHPSLLPYFPAAKSTRG
SRIRRRRADGTDSAALDAGKNSSRCTGGDLTRRLQTFSSYQSPQQQQQQQ
QQQQRHRSRHSLLQRGVVTEKCCCSCYRSAHNWAATRIKRSRGPVPSRQQ
SLPDNHDVSRSSRDTTDLAARGENSTTTPKLPTFVAEGIAAADETNEADL
TRSQRFVNRINGLAHDRNFDGVLRSLHDAEAASANFGLPHLSPSEKVAPS
LPQNQLQSHTPAVDIEGYNACLGALAQGRRWLDAVKLLCRMEKAGVRPDY
CSFERTVAACYRANEFGQTVVLRRQMQRGHGGGDSGDPPSPPDWAIFQAE
VESLKGSGGGRKWPLLAMQAAQEDAQEEQEQLSESQKFVKCIQALSDPED
VPKVMQLLRDAEMTGDTSSGVVDVDGYNACLHALARARSWKHAMNLLDNM
EKVGVVKPDYHCYDRGVEACCRAGEFAQAAAVREKMRAAGILLDWSVFQM
EIKACGAVGNWQRALELLAELRREGIALNSAAYDAVMDAFARSNQWRAAL
IVLREMKAAGWELGVRSYRGAIISAAKAGACDAALDLLGEMQASRVELTE
ASPGIYNTVAIACAKADMWHEASGVLEDMTTLGMRPNVVSYNAGMAACAR
AGQWRKVHILLEKMQKFGIPPDDYTFSCLIAVCGKAGRWDQAVEMHDEMK
RLGIRATAATFNSVISVCGKPRVPWERAVEYLGEMLDAGVAPNSYTVTTV
AKVLGGCGGTRRWARAVPMLLALLWDRAGVDGVVEVPNLVVADIAITAYA
MAGRWRGGMEVLEGLKRRGVRPDARVYNALIVGLVHGRGDYWTGLLGRGG
VIG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat