mRNA_H-paniculata_contig8110.16131.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8110.16131.1
Unique NamemRNA_H-paniculata_contig8110.16131.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Match: A0A6H5JJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ20_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 8.870e-32
Identity = 62/141 (43.97%), Postives = 90/141 (63.83%), Query Frame = 1 
Query:    4 ACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAVAIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSHLQCILNT*ASKKGFGPVVGSFWRRSMEQPDAFPPEFWELFLQ 426
            ACRH GG+ +AA ALL+D+ +  N++T+ ++ AKF  ED   V  A A AIAASR     G    W P+ E +P++L+ V+  +++ S AG+DG R SHL+ I+NT   ++ F   + S WRR +  P+AFPPEFW L+ Q
Sbjct:  271 ACRHSGGVKDAAGALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQ 411
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BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Match: A0A6H5JGW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW0_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.030e-31
Identity = 62/141 (43.97%), Postives = 91/141 (64.54%), Query Frame = 1 
Query:    4 ACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAVAIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSHLQCILNT*ASKKGFGPVVGSFWRRSMEQPDAFPPEFWELFLQ 426
            ACRH GG+ +AA+ALL+D+ +  N++T+ ++ AKF  ED   V  A A AIAASR     G    W P+ E +P++L+ V+  +++ S AG+DG R SHL+ I+NT   ++ F   + S WRR +  P+AFPPEFW L+ Q
Sbjct:  367 ACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQ 507
[Close]
BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.970e-31
Identity = 62/141 (43.97%), Postives = 91/141 (64.54%), Query Frame = 1 
Query:    4 ACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAVAIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSHLQCILNT*ASKKGFGPVVGSFWRRSMEQPDAFPPEFWELFLQ 426
            ACRH GG+ +AA+ALL+D+ +  N++T+ ++ AKF  ED   V  A A AIAASR     G    W P+ E +P++L+ V+  +++ S AG+DG R SHL+ I+NT   ++ F   + S WRR +  P+AFPPEFW L+ Q
Sbjct:  297 ACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQ 437
[Close]
BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.670e-31
Identity = 62/141 (43.97%), Postives = 90/141 (63.83%), Query Frame = 1 
Query:    4 ACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAVAIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSHLQCILNT*ASKKGFGPVVGSFWRRSMEQPDAFPPEFWELFLQ 426
            ACRH GG+ +AA+ALL D+ +  N++T+ ++ AKF  ED   V  A A AIAASR     G    W P+ E +P++L+ V+  +++ S AG+DG R SHL+ I+NT   ++ F   + S WRR +  P+AFPPEFW L+ Q
Sbjct:  305 ACRHSGGVKDAARALLVDQTSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQ 445
[Close]
BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 4.680e-31
Identity = 63/141 (44.68%), Postives = 90/141 (63.83%), Query Frame = 1 
Query:    4 ACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAVAIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSHLQCILNT*ASKKGFGPVVGSFWRRSMEQPDAFPPEFWELFLQ 426
            ACRH GG+ +AA+ALL+D+ +  N++T+ ++ AKF  ED   V  A A AIAASR     G    W P+ E +P++L+ VV  +++ S AG+DG R SHL+ I+NT   ++ F   + S WRR ++ P AFPPEFW L  Q
Sbjct:  296 ACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVVNRRSSNSGAGNDGPRFSHLKSIVNTKIGREEFSNAMSSLWRRLIKDPHAFPPEFWTLLKQ 436
[Close]
BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 9.980e-31
Identity = 60/141 (42.55%), Postives = 89/141 (63.12%), Query Frame = 1 
Query:    4 ACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAVAIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSHLQCILNT*ASKKGFGPVVGSFWRRSMEQPDAFPPEFWELFLQ 426
            ACRH GG+ +AA+ALL+D+ +  N++T+ ++ AKF  ED   V  A A AIAASR     G    W P+ E +P++L+ V+  +++ S AG+DG R SHL+ I+N    ++ F   +   WRR +  P+AFPPEFW L+ Q
Sbjct:   19 ACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINRRSSNSGAGNDGQRFSHLKSIVNNKIGREEFSNAMSPLWRRLINDPNAFPPEFWTLWKQ 159
[Close]
BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.680e-30
Identity = 61/141 (43.26%), Postives = 90/141 (63.83%), Query Frame = 1 
Query:    4 ACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAVAIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSHLQCILNT*ASKKGFGPVVGSFWRRSMEQPDAFPPEFWELFLQ 426
            ACRH GG+ +AA+ALL+D+ +  N++T+ ++ AKF  ED   V  A A A AASR     G    W P+ E +P++L+ V+  +++ S AG+DG R SHL+ I+NT   ++ F   + S WRR +  P+AFPPEFW L+ Q
Sbjct:  318 ACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAKAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQ 458
[Close]
BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.260e-30
Identity = 60/139 (43.17%), Postives = 89/139 (64.03%), Query Frame = 1 
Query:    4 ACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAVAIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSHLQCILNT*ASKKGFGPVVGSFWRRSMEQPDAFPPEFWELF 420
            ACRH GG+ +AA+ALL+D+ +  N++T+ ++ AKF +ED   V  A A AIAASR     G    W P+ E +P +L+ V+  +++   AG+DG R SHL+ I+NT   ++ F   + S WRR +  P+AFPPEFW L+
Sbjct:  304 ACRHSGGVKDAARALLADQPSPGNDETWARLKAKFTREDPVQVEQANAEAIAASRTEEEEGSAPRWRPETEFDPRVLLQVINSRSSNFGAGNDGRRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLW 442
[Close]
BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 7.380e-29
Identity = 60/141 (42.55%), Postives = 89/141 (63.12%), Query Frame = 1 
Query:    4 ACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAVAIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSHLQCILNT*ASKKGFGPVVGSFWRRSMEQPDAFPPEFWELFLQ 426
            ACRH GG+ +AA+ALL++  +  N++T+ ++ AKF  ED+ AV  A A AIA S      G    W P++E +P++LI V+  +++ S AG+DG R SHL+ I NT   ++ F   + S WRR +  P+ FPPEFW L+ Q
Sbjct:  467 ACRHSGGVKDAARALLAEPRSPGNDETWERLKAKFPLEDSAAVEQAVADAIAESITEEENGSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQ 607
[Close]
BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.270e-28
Identity = 61/142 (42.96%), Postives = 89/142 (62.68%), Query Frame = 1 
Query:    4 ACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAVAIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSHLQC-ILNT*ASKKGFGPVVGSFWRRSMEQPDAFPPEFWELFLQ 426
            ACRH GG+ +AA+ALL+D+ +  N++T+ ++ AKF  ED   V  A A AIAASR     G    W P+ E +P++L+ V+  +++ S AG+DG   SHL   I+NT   ++ F   + S WRR +  P+AFPPEFW L+ Q
Sbjct:  267 ACRHSGGVKDAARALLADQPSPGNDETWARLKAKFPHEDPVQVEQAIAEAIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQCFSHLNXSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQ 408
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8110.16131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JJ20_9PHAE8.870e-3243.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGW0_9PHAE1.030e-3143.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMQ2_9PHAE1.970e-3143.97Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K195_9PHAE2.670e-3143.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKQ2_9PHAE4.680e-3144.68Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE9.980e-3142.55Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE1.680e-3043.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA96_9PHAE2.260e-3043.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE7.380e-2942.55Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJC0_9PHAE1.270e-2842.96Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8110contigH-paniculata_contig8110:3458..3885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.2862203-CDS-H-paniculata_contig8110:3457..37811622931016.2862203-CDS-H-paniculata_contig8110:3457..3781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8110 3458..3781 +
1691481551.910582-CDS-H-paniculata_contig8110:3457..37811691481551.910582-CDS-H-paniculata_contig8110:3457..3781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8110 3458..3781 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.3002534-UTR-H-paniculata_contig8110:3781..38851622931016.3002534-UTR-H-paniculata_contig8110:3781..3885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8110 3782..3885 +
1691481551.9235382-UTR-H-paniculata_contig8110:3781..38851691481551.9235382-UTR-H-paniculata_contig8110:3781..3885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8110 3782..3885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8110.16131.1prot_H-paniculata_contig8110.16131.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8110 3458..3781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8110.16131.1

>prot_H-paniculata_contig8110.16131.1 ID=prot_H-paniculata_contig8110.16131.1|Name=mRNA_H-paniculata_contig8110.16131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
AACRHKGGISNAAKALLSDELASANEDTFGKVSAKFGQEDAPAVAAAKAV
AIAASRDSLAAGGDAAWSPDDENNPEILIAVVKPKNALSAAGDDGLRSSH
LQCILNT*
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mRNA from alignment at H-paniculata_contig8110:3458..3885+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8110.16131.1 ID=mRNA_H-paniculata_contig8110.16131.1|Name=mRNA_H-paniculata_contig8110.16131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=428bp|location=Sequence derived from alignment at H-paniculata_contig8110:3458..3885+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCGTGCAGGCACAAAGGGGGTATCTCTAATGCGGCGAAAGCGTTGTT
GTCGGATGAACTCGCATCTGCCAACGAGGATACCTTCGGCAAAGTCAGCG
CGAAATTCGGCCAGGAGGATGCGCCCGCGGTGGCAGCGGCGAAAGCAGTG
GCCATAGCAGCAAGCCGGGATTCGCTCGCCGCGGGTGGAGATGCCGCCTG
GAGCCCAGACGACGAGAATAACCCCGAAATATTGATAGCGGTTGTGAAGC
CAAAGAACGCTCTGTCTGCAGCGGGGGACGATGGCCTGCGTTCCTCCCAC
CTGCAGTGCATTCTGAACACCTGAGCGAGTAAGAAAGGTTTTGGCCCCGT
TGTCGGGTCTTTCTGGCGGCGCTCCATGGAACAACCCGACGCCTTCCCGC
CGGAGTTCTGGGAGCTGTTCCTCCAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8110:3458..3885+

>mRNA_H-paniculata_contig8110.16131.1 ID=mRNA_H-paniculata_contig8110.16131.1|Name=mRNA_H-paniculata_contig8110.16131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig8110:3458..3885+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCGTGCAGGCACAAAGGGGGTATCTCTAATGCGGCGAAAGCGTTGTT
GTCGGATGAACTCGCATCTGCCAACGAGGATACCTTCGGCAAAGTCAGCG
CGAAATTCGGCCAGGAGGATGCGCCCGCGGTGGCAGCGGCGAAAGCAGTG
GCCATAGCAGCAAGCCGGGATTCGCTCGCCGCGGGTGGAGATGCCGCCTG
GAGCCCAGACGACGAGAATAACCCCGAAATATTGATAGCGGTTGTGAAGC
CAAAGAACGCTCTGTCTGCAGCGGGGGACGATGGCCTGCGTTCCTCCCAC
CTGCAGTGCATTCTGAACACCTGAGCTGCGTGCAGGCACAAAGGGGGTAT
CTCTAATGCGGCGAAAGCGTTGTTGTCGGATGAACTCGCATCTGCCAACG
AGGATACCTTCGGCAAAGTCAGCGCGAAATTCGGCCAGGAGGATGCGCCC
GCGGTGGCAGCGGCGAAAGCAGTGGCCATAGCAGCAAGCCGGGATTCGCT
CGCCGCGGGTGGAGATGCCGCCTGGAGCCCAGACGACGAGAATAACCCCG
AAATATTGATAGCGGTTGTGAAGCCAAAGAACGCTCTGTCTGCAGCGGGG
GACGATGGCCTGCGTTCCTCCCACCTGCAGTGCATTCTGAACACCTGA
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