mRNA_H-paniculata_contig12569.1611.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12569.1611.1
Unique NamemRNA_H-paniculata_contig12569.1611.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Match: A0A8E0VLW6_9TREM (26S proteasome regulatory subunit n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0VLW6_9TREM)

HSP 1 Score: 65.5 bits (158), Expect = 1.480e-12
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   10 YVLKRTSWVRVLQLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            Y+L  T W  V++L+DGFNGADLRNV TEAG+FAIRA+RDY +E
Sbjct:   36 YLLFVTDWEAVVKLSDGFNGADLRNVCTEAGMFAIRAERDYTVE 79
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BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Match: D7G9F8_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9F8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.680e-12
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:   40 VLQLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            V++LADGFNGADLRNVGTEAGLFAIRADRDYVLE
Sbjct:  336 VVKLADGFNGADLRNVGTEAGLFAIRADRDYVLE 369
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BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Match: A0A5J4N3M2_9TREM (26S proteasome regulatory subunit T4 n=2 Tax=Paragonimus TaxID=34503 RepID=A0A5J4N3M2_9TREM)

HSP 1 Score: 61.2 bits (147), Expect = 3.840e-11
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   31 WVRVLQLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            W  V++L+DGFNGADLRNV TEAG+FAIRA+RDY +E
Sbjct:   19 WEAVVKLSDGFNGADLRNVCTEAGMFAIRAERDYTVE 55
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BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Match: A0A6I9PD39_9TELE (26S protease regulatory subunit 10B n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9PD39_9TELE)

HSP 1 Score: 60.8 bits (146), Expect = 6.620e-11
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 DCVYVLKRTSWVRVLQLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            DC  +   + +  +++L+DGFNGADLRNV TEAGLFAIRADR+YV +
Sbjct:   17 DCERLCLFSDYEAIVKLSDGFNGADLRNVCTEAGLFAIRADREYVTQ 63
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BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Match: A0A812UMP2_SYMMI (RPT4A protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UMP2_SYMMI)

HSP 1 Score: 63.9 bits (154), Expect = 7.030e-11
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:   40 VLQLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            V++LADGFNGADLRN+ TEAGLFAIRADRDYVLE
Sbjct:  189 VVKLADGFNGADLRNICTEAGLFAIRADRDYVLE 222
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BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Match: U6M7T1_EIMMA (AAA_lid_3 domain-containing protein n=1 Tax=Eimeria maxima TaxID=5804 RepID=U6M7T1_EIMMA)

HSP 1 Score: 60.5 bits (145), Expect = 8.120e-11
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   22 RTSWVRVLQLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            R  +  + +L DGFNGADLRNV TEAG+FAIRADRDYV+E
Sbjct:   18 RLDFDAICRLCDGFNGADLRNVCTEAGMFAIRADRDYVIE 57
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BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Match: A0A7S3H6N5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6N5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.120e-11
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   40 VLQLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            V++LADGFNGADLRN+ TEAGLFAIR DRDYVLE
Sbjct:   91 VVKLADGFNGADLRNICTEAGLFAIREDRDYVLE 124
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BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Match: A0A4Y2FGU3_ARAVE (26S proteasome regulatory subunit 10B n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FGU3_ARAVE)

HSP 1 Score: 63.2 bits (152), Expect = 1.050e-10
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   28 SWVRVLQLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            +W  V++L+DGFNGADLRNV TEAG+FAIRADR+YV+E
Sbjct:  161 NWEAVVKLSDGFNGADLRNVCTEAGMFAIRADREYVVE 198
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BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Match: A0A7R9LIF8_9ACAR (Hypothetical protein n=2 Tax=Oppiidae TaxID=229795 RepID=A0A7R9LIF8_9ACAR)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-10
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   31 WVRVLQLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            W  V++L+DGFNGADLRNV TEAGLFAIRA+RDYV+E
Sbjct:  335 WEAVVKLSDGFNGADLRNVCTEAGLFAIRAERDYVIE 371
[Close]
BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Match: A0A7R9KL72_9ACAR (Translation machinery-associated protein 7 homolog n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9KL72_9ACAR)

HSP 1 Score: 63.9 bits (154), Expect = 1.360e-10
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   31 WVRVLQLADGFNGADLRNVGTEAGLFAIRADRDYVLE 141
            W  V++L+DGFNGADLRNV TEAGLFAIRA+RDYV+E
Sbjct:  171 WEAVVKLSDGFNGADLRNVCTEAGLFAIRAERDYVIE 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12569.1611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E0VLW6_9TREM1.480e-1268.1826S proteasome regulatory subunit n=1 Tax=Fasciolo... [more]
D7G9F8_ECTSI5.680e-1294.12AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A5J4N3M2_9TREM3.840e-1172.9726S proteasome regulatory subunit T4 n=2 Tax=Parag... [more]
A0A6I9PD39_9TELE6.620e-1159.5726S protease regulatory subunit 10B n=1 Tax=Nototh... [more]
A0A812UMP2_SYMMI7.030e-1188.24RPT4A protein n=1 Tax=Symbiodinium microadriaticum... [more]
U6M7T1_EIMMA8.120e-1170.00AAA_lid_3 domain-containing protein n=1 Tax=Eimeri... [more]
A0A7S3H6N5_9STRA9.120e-1185.29Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4Y2FGU3_ARAVE1.050e-1073.6826S proteasome regulatory subunit 10B n=1 Tax=Aran... [more]
A0A7R9LIF8_9ACAR1.330e-1078.38Hypothetical protein n=2 Tax=Oppiidae TaxID=229795... [more]
A0A7R9KL72_9ACAR1.360e-1078.38Translation machinery-associated protein 7 homolog... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12569contigH-paniculata_contig12569:2606..2758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue9.9e-10
Seed eggNOG ortholog2880.D7G9F8
Preferred nameRPT4
KEGG koko:K03064
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000502,GO:0000731,GO:0001672,GO:0002020,GO:0002082,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0005838,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006289,GO:0006301,GO:0006302,GO:0006355,GO:0006357,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006919,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0007088,GO:0007346,GO:0008047,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008333,GO:0008540,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010847,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0022624,GO:0023051,GO:0023056,GO:0030071,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031445,GO:0031593,GO:0031595,GO:0031597,GO:0031625,GO:0031935,GO:0031936,GO:0031938,GO:0031939,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032784,GO:0032786,GO:0032968,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034098,GO:0034214,GO:0034243,GO:0034404,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036402,GO:0036435,GO:0036503,GO:0036513,GO:0040029,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042623,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045787,GO:0045815,GO:0045838,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051881,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060260,GO:0060261,GO:0060828,GO:0060968,GO:0060969,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070085,GO:0070647,GO:0070682,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090068,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:0140096,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902275,GO:1902494,GO:1902680,GO:1902801,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905268,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000112,GO:2000116,GO:2000142,GO:2000144,GO:2000152,GO:2000158,GO:2001056,GO:2001141,GO:2001169,GO:2001171,GO:2001251,GO:2001252
EggNOG free text desc.proteasome-activating ATPase activity
EggNOG OGsCOG1222@1,KOG0651@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928980.3564563-CDS-H-paniculata_contig12569:2605..27581622928980.3564563-CDS-H-paniculata_contig12569:2605..2758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12569 2606..2758 +
1691480688.9280832-CDS-H-paniculata_contig12569:2605..27581691480688.9280832-CDS-H-paniculata_contig12569:2605..2758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12569 2606..2758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12569.1611.1prot_H-paniculata_contig12569.1611.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12569 2606..2758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12569.1611.1

>prot_H-paniculata_contig12569.1611.1 ID=prot_H-paniculata_contig12569.1611.1|Name=mRNA_H-paniculata_contig12569.1611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
DCVYVLKRTSWVRVLQLADGFNGADLRNVGTEAGLFAIRADRDYVLEVCV
*
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mRNA from alignment at H-paniculata_contig12569:2606..2758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12569.1611.1 ID=mRNA_H-paniculata_contig12569.1611.1|Name=mRNA_H-paniculata_contig12569.1611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig12569:2606..2758+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTGTGTGTACGTTCTTAAACGGACATCGTGGGTTCGTGTTTTGCAGCT
GGCCGATGGGTTCAACGGAGCCGATCTGCGGAACGTGGGGACTGAGGCCG
GATTGTTCGCCATTAGAGCTGACCGTGACTACGTCTTGGAGGTATGCGTG
TAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12569:2606..2758+

>mRNA_H-paniculata_contig12569.1611.1 ID=mRNA_H-paniculata_contig12569.1611.1|Name=mRNA_H-paniculata_contig12569.1611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig12569:2606..2758+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTGTGTGTACGTTCTTAAACGGACATCGTGGGTTCGTGTTTTGCAGCT
GGCCGATGGGTTCAACGGAGCCGATCTGCGGAACGTGGGGACTGAGGCCG
GATTGTTCGCCATTAGAGCTGACCGTGACTACGTCTTGGAGGTATGCGTG
TAGGATTGTGTGTACGTTCTTAAACGGACATCGTGGGTTCGTGTTTTGCA
GCTGGCCGATGGGTTCAACGGAGCCGATCTGCGGAACGTGGGGACTGAGG
CCGGATTGTTCGCCATTAGAGCTGACCGTGACTACGTCTTGGAGGTATGC
GTGTAG
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