mRNA_H-paniculata_contig7911.15939.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 135 bits (340), Expect = 3.700e-33 Identity = 94/286 (32.87%), Postives = 148/286 (51.75%), Query Frame = 1
Query: 1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSRGDRSS*SCANQSMAFVSLRRRG----IEPSIQILGTLDSSLQ*ATVRQRWQG-RLH---HVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELT-VKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFL 831
MD STAFL + E V+++Q PGF+VKD N+S+ ++ I+P I +G + G +++ +V D+ A S+V+ L +F M D G+ + +LG++I +D+E T+++S S+ ++F M S P TPG G E++ ++PE + LLDE R YQ IVGSL+++ Q R DI + Q AR M P+ VHM + K LRYL G + ++Y F+L F D++++N NP+ STS + L
Sbjct: 29 MDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDA----ISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK-KGGFKLATFSDSNWAN-NPDNGKSTSSYLTML 307
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR) HSP 1 Score: 131 bits (329), Expect = 2.850e-31 Identity = 94/297 (31.65%), Postives = 149/297 (50.17%), Query Frame = 1
Query: 1 MDFSTAFLNGKLGENVYMQQAPGF----------KVKDS-RGDRSS*SCAN----QSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQRWQGRLHHVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFLFGGVV 846
MD TAFLNG L E +YM+Q G+ K+K S G + S C + +SM + + +P + + RQ + +V D+ + ++ + ++ L K+ M D G+++ ILGI + QDK ++ + H + ++ +K+ MD +NPV TP K +G + + YQ+IVGSL++ +TR DIA VS ++F P + HM +VKRILRYL G NL L Y + L GF DA ++ ++R ST+G+++ L GG V
Sbjct: 108 MDVVTAFLNGHLEEEIYMEQPDGYIKPGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFV-----------RARQELEILAVYVDDLILITESLESM----TELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDG--VSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQRSESETLLGFSDADWAGDQDDRR-STTGNIFLLGGGAV 386
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6G0J2S8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0J2S8_LARCR) HSP 1 Score: 131 bits (329), Expect = 4.730e-31 Identity = 94/297 (31.65%), Postives = 149/297 (50.17%), Query Frame = 1
Query: 1 MDFSTAFLNGKLGENVYMQQAPGF----------KVKDS-RGDRSS*SCAN----QSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQRWQGRLHHVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFLFGGVV 846
MD TAFLNG L E +YM+Q G+ K+K S G + S C + +SM + + +P + + RQ + +V D+ + ++ + ++ L K+ M D G+++ ILGI + QDK ++ + H + ++ +K+ MD +NPV TP K +G + + YQ+IVGSL++ +TR DIA VS ++F P + HM +VKRILRYL G NL L Y + L GF DA ++ ++R ST+G+++ L GG V
Sbjct: 247 MDVVTAFLNGHLEEEIYMEQPDGYIKPGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFV-----------RARQELEILAVYVDDLILITESLESM----TELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDG--VSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQRSESETLLGFSDADWAGDQDDRR-STTGNIFLLGGGAV 525
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.740e-30 Identity = 93/289 (32.18%), Postives = 149/289 (51.56%), Query Frame = 1
Query: 1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSRG-------DRSS*SCANQSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQRWQG-RLH---HVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELT-VKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFL 831
MD STAFL + E V+++Q PGF+VKD G ++S A + + I+P + +G + G +++ +V D+ A S+V+ L +F M D G+ + +LG++I +D+E T+++S S+ ++F + S P TPG G E++ ++PE + LLDE R YQ IVGSL+++ Q R DI + Q AR M P+ VHM + K LRYL G + ++Y F+L F D++++N NP+ STS + L
Sbjct: 1259 MDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNT----IDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDA----ISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK-KGGFKLATFSDSNWAN-NPDNGKSTSSYLTVL 1536
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO) HSP 1 Score: 123 bits (309), Expect = 4.640e-28 Identity = 102/299 (34.11%), Postives = 142/299 (47.49%), Query Frame = 1
Query: 1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSR-----------GDRSS*SCANQSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQRWQGRLHHVYDISRRSAHHQAQ*FGCS-----LVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTP-GTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFLFGGVV 846
MD TAFLNG+L E VYMQQ GF VK G + S C N + L++ G +Q G D + A + + + +V DI GCS V+ L F + D G++ LG+ I Q E G I + ++ KKF M++S PV TP +L + S ++D + +Q+ VGSL++L TR DIA+ V+ ARF PT H +VKRI+RYL G NL L Y+ D E GF DA ++ + R S SG M+ + G V
Sbjct: 347 MDVKTAFLNGELKEEVYMQQPEGFVVKGKEHLVCKLNRSIYGLKQSPRCWN-IVLDEQLKKMGF---VQTTG--DPCIYTAATGEMFIIAV-YVDDILLA---------GCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKLVKHSDDSEVMDP---KQFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYNKDKPKECIGFSDADWAG-DQNDRKSMSGYMFQISGAAV 625
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 123 bits (308), Expect = 5.480e-28 Identity = 92/304 (30.26%), Postives = 144/304 (47.37%), Query Frame = 1
Query: 1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSRG-------DRSS*SCANQ-------------SMAFVSLRRRGIEPSIQILGT------LDSSLQ*ATVRQRWQGRLHHVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELT-VKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFL 831
MD STAFL + E V+++Q PGF+VKD G ++S A + FV+L+ +P + + L + + + H+ + G + L +F M D G+ + LG+ I +D+E T+++S S+ ++F M S P TPG G E++ ++PE + LLDE R YQ IVGSL+++ Q R DI + Q AR M P+ VHM + K LRYL G + ++Y F+L F D++++N NP+ STS + L
Sbjct: 238 MDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKS---DPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLG-------GIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYK-KGGFKLATFSDSNWAN-NPDNGKSTSSYLTML 528
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A0J7NHJ8_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NHJ8_LASNI) HSP 1 Score: 122 bits (306), Expect = 1.360e-27 Identity = 85/293 (29.01%), Postives = 148/293 (50.51%), Query Frame = 1
Query: 1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSRGDRSS*SCANQSMAFVSLR----RRGIEPSIQILGTLDSSLQ*ATVRQRWQGRLH----HVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTG---MELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFLFGGVV 846
+D TAFL G L E +YM+Q G K G+ S + + + R ++ +++ LG S++ + +L +V D+ S +A+ +L + L KF M D G V +LG+ + +D+E+G I ++ + ++ ++F+M D NP TP ++ ++ P+ + + + Y+ +GS++FL Q TR DIA ++ + + NP H +VKR+ RYL G N L YS D+N L GFCDA ++ ++R ST+G ++ L G +
Sbjct: 898 LDVVTAFLQGDLSEEIYMEQPEGSVTK---GEESKVCLLRRPLYGLKQGSFEWNRKLDSALKSLGFTRSNVDQGIYIKHHDSKLVIIAVYVDDLLLLSNDVKAK----NLTKKQLHKKFEMKDLGAVRNLLGMQVHRDREQGKIFINQATYIDNILRRFNMCDCNPARTPSDPNQRLDKSMAPKSPDEVKDMEKVPYREALGSMMFLCQGTRPDIAHAITSLSVYSENPGKAHWAAVKRLFRYLKGTRNYGLIYSRDTNPTLQGFCDADWAGDTNDRR-STTGYLFTLQGAAL 1182
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 121 bits (304), Expect = 2.280e-27 Identity = 81/256 (31.64%), Postives = 128/256 (50.00%), Query Frame = 1
Query: 1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSRG-------DRSS*SCANQSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQRWQGRLHHVY------DISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSY 729
MD STAFL + ENV+++Q PGF+VKD G +S A + I+P + +G + L+ T + VY D+ + +A S+++ L +F M D G+V +LG++I +D+ +GT+++S S+ ++F M + P TPG G EL+ K LL E R YQ IVG LI++ Q R DI + Q R M P+ +HM + K LRY+ G ++ +++Y
Sbjct: 567 MDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWF----HTIDPFLVEIGFVP--LKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRA----ISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAGTTDFRITY 812
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 121 bits (303), Expect = 2.770e-27 Identity = 72/182 (39.56%), Postives = 107/182 (58.79%), Query Frame = 1
Query: 307 VRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASY--SNVNPEKRTSTSGSMYFLFGGVV 846
++ L KF M D G +LG++I+Q G I VS H V+++ K+ M D P TPG+G E+ +PE ++ L E ++ YQ IVGSL+FL +TR +I + V R M PT+ HM KR+LRYL G ++ L + ++L +CDAS+ S+ +KR+ST G ++ L GGVV
Sbjct: 404 LKKQLSDKFKMTDGGPAELLLGMEISQSD--GEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFR-RGQWDLKCYCDASFAGSSERLQKRSST-GYIFILAGGVV 581
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A1J3CVC5_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CVC5_NOCCA) HSP 1 Score: 120 bits (301), Expect = 6.400e-27 Identity = 92/291 (31.62%), Postives = 142/291 (48.80%), Query Frame = 1
Query: 1 MDFSTAFLNGKLGENVYMQQAPGF-----KVKDSRGDRSS*SCANQSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQR-WQGRLHHVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTP-GTGMELTVKPEGSVL--LDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFLFGGVV 846
MD TAFL+G L E +YM+Q G+ K RS + + ++ + DS + +R+ + L +V DI S + +++ L ++F M D G+ +ILG++IT+D+ +GT+++S V + F MD S V T G E + ++ + YQ+ VGSL++ + TR D+A+ V RFM NP H VK ILRYLNG + +KLSY D F L G+CDA Y+ + +KR S SG ++ L G +
Sbjct: 962 MDVKTAFLHGYLDETIYMEQPEGYVDERYPNKVCLLQRSLYGLKQSPRQWNTRFDSFMQSHKYVRSEYDSCVYFKELRRNEYVYLLLYVDDILIASEDKKY----VEELKTLLSSEFEMKDLGEAKKILGMEITRDRVKGTLTISQEGYVKKVLGNFGMDQSKSVSTAMGAHFRFMAATEDELQDQREDMEKIPYQSAVGSLMYSMIGTRPDLAYSVGLVCRFMSNPIKEHWLGVKWILRYLNGTTEMKLSYRNDGEFVLKGYCDADYA-ADLDKRRSISGVVFTLGGNTI 1247 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7911.15939.1 >prot_H-paniculata_contig7911.15939.1 ID=prot_H-paniculata_contig7911.15939.1|Name=mRNA_H-paniculata_contig7911.15939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp MAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNback to top mRNA from alignment at H-paniculata_contig7911:2982..3827+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7911.15939.1 ID=mRNA_H-paniculata_contig7911.15939.1|Name=mRNA_H-paniculata_contig7911.15939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=846bp|location=Sequence derived from alignment at H-paniculata_contig7911:2982..3827+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7911:2982..3827+ >mRNA_H-paniculata_contig7911.15939.1 ID=mRNA_H-paniculata_contig7911.15939.1|Name=mRNA_H-paniculata_contig7911.15939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig7911:2982..3827+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |