mRNA_H-paniculata_contig7879.15897.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Match: D8LK78_ECTSI (Ubiquinol cytochrome c reductase subunit QCR7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK78_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 9.870e-22 Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1
Query: 28 GLKYEDVFNEEIPVVKEAIRRLAPEQRLARERRLFRAADISLKRVPLPDHIQKAHDPFELYLDEKIQEVQAEWDERELLNSR 273
GLK++D+ EE P V EA+RRL PEQ+LAR+RR FRA DISLK+ PLPDHIQ DPFE YL + I+EV+ E ERELLN R
Sbjct: 32 GLKFDDLMIEEDPDVAEAVRRLTPEQQLARKRRQFRAFDISLKKTPLPDHIQAVQDPFEPYLQDIIKEVREERLERELLNQR 113
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Match: A0A7R9U2G2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2G2_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.680e-13 Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 28 GLKYEDVFNEEIPVVKEAIRRLAPEQRLARERRLFRAADISLKRVPLPDHIQKAHDPFELYLDEKIQEVQAEWDERELLNS 270
GL+Y+DV NE +P V+EA+ RL PE+++ R+RRL RA D+S K+ +P+ +Q +DPF+ YL + ++ E DERE+LN+
Sbjct: 64 GLRYDDVVNEALPSVQEALTRLTPEEKVGRDRRLKRALDLSFKKKTMPEEMQN-YDPFQKYLYDHKEKALKEQDEREILNN 143
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Match: A0A7S1TZX9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZX9_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 6.410e-13 Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 28 GLKYEDVFNEEIPVVKEAIRRLAPEQRLARERRLFRAADISLKRVPLPDHIQKAHDPFELYLDEKIQEVQAEWDERELLN 267
GLKY+DV NE +P V+EA+ RL PE+++AR+RR+ RA D+S K+ +P+ PFE YL + Q+VQ E DERE+LN
Sbjct: 75 GLKYDDVLNEALPSVQEAVARLDPEEKIARDRRMKRAIDLSFKKKGMPEGSDGK--PFENYLYDHQQKVQEEQDEREILN 152
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Match: A0A4D9D4E8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4E8_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 4.460e-12 Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 7 LGVVLSSGLKYEDVFNEEIPVVKEAIRRLAPEQRLARERRLFRAADISLKRVPLPDHIQKAHDPFELYLDEKIQEVQAEWDERELLN 267
+G + + GL+Y+D+F E+ V K AI L+PE++LARERR+ RA +ISLK+ LP +QK P + YL + EV+AE ER+LLN
Sbjct: 20 VGELNNYGLRYQDLFLEDQAVTK-AIHHLSPEEQLARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 105
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Match: W7U788_9STRA (Mitochondrial trna import complex n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U788_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.890e-11 Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 7 LGVVLSSGLKYEDVFNEEIPVVKEAIRRLAPEQRLARERRLFRAADISLKRVPLPDHIQKAHDPFELYLDEKIQEVQAEWDERELLN 267
+G + + GL+Y+D+F E+ V K AI L+PE+++ARERR+ RA +ISLK+ LP +QK P + YL + EV+AE ER+LLN
Sbjct: 57 VGELNNYGLRYQDLFLEDQAVTK-AIHHLSPEEQVARERRIKRAIEISLKKKYLPADLQKMQTPLKPYLSHALDEVEAEETERKLLN 142
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Match: A0A087SK28_AUXPR (Cytochrome b-c1 complex subunit 7 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SK28_AUXPR) HSP 1 Score: 67.8 bits (164), Expect = 3.190e-10 Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 28 GLKYEDVFNEEIPV-VKEAIRRLAPEQRLARERRLFRAADISLKRVPLPDHIQKAHDPFELYLDEKIQEVQAEWDERELLNS 270
GL+YED+++ E + EA+RRL+P++ AR +RL R D+S+K LP IQ+ PF YLDE + +V+AE +ER+ L S
Sbjct: 36 GLRYEDLYDPEFDLDTAEALRRLSPDEVHARNQRLKRGMDMSMKHSELPHEIQEQQTPFNFYLDETLAQVKAENEERKQLGS 117
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Match: A0A485LT21_9STRA (Aste57867_25145 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LT21_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 8.340e-10 Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 28 GLKYEDVFNEEIPVVKEAIRRLAPEQRLARERRLFRAADISLKRVPLPDHIQKAHDPFELYLDEKIQEVQAEWDERELL 264
GL+Y+D E V + A+ L +Q ++R RRL RAAD+S KR LP+ IQK +PF YLD+K++E ++ DER L
Sbjct: 22 GLRYDDALVETAEV-QRAVSWLGRDQAISRSRRLTRAADLSFKRAYLPEEIQKIQEPFNFYLDDKVEEARSLADERNKL 99
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Match: A0A067CMG3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CMG3_SAPPC) HSP 1 Score: 65.5 bits (158), Expect = 1.110e-9 Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 28 GLKYEDVFNEEIPVVKEAIRRLAPEQRLARERRLFRAADISLKRVPLPDHIQKAHDPFELYLDEKIQEVQAEWDERELL 264
GL+Y+D E+ V +A+ L E+++AR+RRL RA+D+S KR LP+ IQ +P YLD+K++E++ DER L
Sbjct: 21 GLRYDDAL-VEVAEVNKAVSWLGKEEKVARQRRLVRASDLSFKRAYLPEDIQAIQEPMNFYLDDKVEEIRKLGDERNKL 98
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Match: A0A835YW04_9STRA (Cytochrome b-c1 complex subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW04_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.820e-9 Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 10 GVVLSSGLKYEDVFNEEIPVVKEAIRRLAPEQRLARERRLFRAADISLKRVPLPDHIQKAHDPFELYLDEKIQEVQAEWDERELLN 267
G + GLKY+D+ E V A+ R P AR RRL RA+D+SLK+ PLP HIQ+ +PF+ YL I+E + E +ER +N
Sbjct: 19 GTLKEYGLKYQDLLIE-YDDVNTALERADPALVQARNRRLARASDVSLKQKPLPPHIQELQNPFDFYLTPLIEEAKKEREERAAIN 103
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Match: A0A6P6STS5_COFAR (Cytochrome b-c1 complex subunit 7 n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6STS5_COFAR) HSP 1 Score: 60.8 bits (146), Expect = 8.470e-8 Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 28 GLKYEDVFN--EEIPVVKEAIRRLAPEQRLARERRLFRAADISLKRVPLPDHIQKAHDPFELYLDEKIQEVQAEWDERELLNS 270
GL+Y+D+++ E++ + KEA+RRL PE AR +RL RA D+S+K LP+H+Q PF YL + + V+ E ERE L +
Sbjct: 35 GLRYDDLYDLLEDMDI-KEALRRLPPEVVDARNQRLLRAMDLSMKHQYLPEHLQAQQTPFRSYLKDMLALVKRERAEREALGA 116 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7879.15897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7879.15897.1 >prot_H-paniculata_contig7879.15897.1 ID=prot_H-paniculata_contig7879.15897.1|Name=mRNA_H-paniculata_contig7879.15897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp MSLGVVLSSGLKYEDVFNEEIPVVKEAIRRLAPEQRLARERRLFRAADISback to top mRNA from alignment at H-paniculata_contig7879:8347..10356+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7879.15897.1 ID=mRNA_H-paniculata_contig7879.15897.1|Name=mRNA_H-paniculata_contig7879.15897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2010bp|location=Sequence derived from alignment at H-paniculata_contig7879:8347..10356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7879:8347..10356+ >mRNA_H-paniculata_contig7879.15897.1 ID=mRNA_H-paniculata_contig7879.15897.1|Name=mRNA_H-paniculata_contig7879.15897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig7879:8347..10356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |