mRNA_H-paniculata_contig787.15888.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig787.15888.1
Unique NamemRNA_H-paniculata_contig787.15888.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig787.15888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig787contigH-paniculata_contig787:7603..8267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size665
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig787.15888.1prot_H-paniculata_contig787.15888.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig787 7791..8141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.7851942-UTR-H-paniculata_contig787:7602..77901622930978.7851942-UTR-H-paniculata_contig787:7602..7790Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig787 7603..7790 +
1691481536.018071-UTR-H-paniculata_contig787:7602..77901691481536.018071-UTR-H-paniculata_contig787:7602..7790Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig787 7603..7790 +
1622930978.8150003-UTR-H-paniculata_contig787:8141..82671622930978.8150003-UTR-H-paniculata_contig787:8141..8267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig787 8142..8267 +
1691481536.0459473-UTR-H-paniculata_contig787:8141..82671691481536.0459473-UTR-H-paniculata_contig787:8141..8267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig787 8142..8267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.8019538-CDS-H-paniculata_contig787:7790..81411622930978.8019538-CDS-H-paniculata_contig787:7790..8141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig787 7791..8141 +
1691481536.0348966-CDS-H-paniculata_contig787:7790..81411691481536.0348966-CDS-H-paniculata_contig787:7790..8141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig787 7791..8141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig787.15888.1

>prot_H-paniculata_contig787.15888.1 ID=prot_H-paniculata_contig787.15888.1|Name=mRNA_H-paniculata_contig787.15888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MIIVIAAGSKKSSRWCTPIISNWLEVPIRRVLYDGGVCSCMSVMDVFLLI
RSDDIIRSLCVHDFWVIEGSQGEGDRLYLVGTELFYNLTSIRALYLLYVE
PCQLNYLCRMYALSGL*
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mRNA from alignment at H-paniculata_contig787:7603..8267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig787.15888.1 ID=mRNA_H-paniculata_contig787.15888.1|Name=mRNA_H-paniculata_contig787.15888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=665bp|location=Sequence derived from alignment at H-paniculata_contig787:7603..8267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATATATATATTCGCGGTCTGTTCTCGAGGTGTGTGTGTGTGGCCGAAGT
AGTGCTTGCGAAAACCCTGGGTAAATTTTCCTGTATGCATATCAAATTAT
CATCAACGGGGGGGTACATACCTGTGTGATAATATATATAGATACAGGCA
CAGTAGGCAGTATTTTTTAACATAATGTTTATGGAATAATGATAATAGTA
ATAGCAGCAGGTTCGAAAAAATCGAGTCGTTGGTGCACTCCCATTATCAG
CAATTGGTTGGAAGTACCGATACGAAGGGTGTTGTACGATGGTGGTGTAT
GTTCATGCATGAGTGTGATGGACGTATTTTTGCTTATAAGGAGTGATGAC
ATAATTCGGTCGCTCTGCGTTCACGATTTTTGGGTTATTGAAGGTAGTCA
GGGGGAAGGAGATAGATTATACCTGGTGGGCACCGAATTATTCTACAACC
TGACCAGCATCCGAGCGCTGTATTTGTTGTACGTAGAACCATGCCAGCTC
AATTATCTGTGCCGTATGTATGCACTATCTGGACTCTGAGTGGTGTGTCT
GAACAGTGGGAGCTCCCATAGCCGTAATAGTGGCACGAGGAGAACTTGCT
TCCTGTGCACCAGCATTTTTGCACGGTTCCAAGTTTCGCGAAAATGAAAG
ATAGTTCGAATACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig787:7603..8267+

>mRNA_H-paniculata_contig787.15888.1 ID=mRNA_H-paniculata_contig787.15888.1|Name=mRNA_H-paniculata_contig787.15888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig787:7603..8267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAATAGTAATAGCAGCAGGTTCGAAAAAATCGAGTCGTTGGTGCAC
TCCCATTATCAGCAATTGGTTGGAAGTACCGATACGAAGGGTGTTGTACG
ATGGTGGTGTATGTTCATGCATGAGTGTGATGGACGTATTTTTGCTTATA
AGGAGTGATGACATAATTCGGTCGCTCTGCGTTCACGATTTTTGGGTTAT
TGAAGGTAGTCAGGGGGAAGGAGATAGATTATACCTGGTGGGCACCGAAT
TATTCTACAACCTGACCAGCATCCGAGCGCTGTATTTGTTGTACGTAGAA
CCATGCCAGCTCAATTATCTGTGCCGTATGTATGCACTATCTGGACTCTG
AATGATAATAGTAATAGCAGCAGGTTCGAAAAAATCGAGTCGTTGGTGCA
CTCCCATTATCAGCAATTGGTTGGAAGTACCGATACGAAGGGTGTTGTAC
GATGGTGGTGTATGTTCATGCATGAGTGTGATGGACGTATTTTTGCTTAT
AAGGAGTGATGACATAATTCGGTCGCTCTGCGTTCACGATTTTTGGGTTA
TTGAAGGTAGTCAGGGGGAAGGAGATAGATTATACCTGGTGGGCACCGAA
TTATTCTACAACCTGACCAGCATCCGAGCGCTGTATTTGTTGTACGTAGA
ACCATGCCAGCTCAATTATCTGTGCCGTATGTATGCACTATCTGGACTCT
GA
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