prot_H-paniculata_contig7852.15877.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7852.15877.1
Unique Nameprot_H-paniculata_contig7852.15877.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length308
Homology
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BLAST of mRNA_H-paniculata_contig7852.15877.1 vs. uniprot
Match: D8LI48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI48_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.380e-27
Identity = 103/296 (34.80%), Postives = 130/296 (43.92%), Query Frame = 0 
Query:   35 GLNRPRYAEWGPKLERLAMLLQQRTDTNGGFAGDTSGRSDWRNETRGREGEPAGLDDSKRSDPPNSLRNALNSGPSPEDFDGSIEALGDAGHANGAACLLRVMRREGFHASPRAYRSVIYACARIGLLSEAVALAKEMEA-----------EGDCPRRRRRRNRSPPSVLNSMSATEQATDLNQTRA----LVGDFALVG----FGVQGGTDDAAALSSEEAGEGRREPLSSRKVEVDAQVDGDQTGKXXXXXXXXXXXXXXXXXXXXXXXXXXX---YDLGVVYNCIVCNFARAA 308
            G+NR RY +W P+L  +A LLQ    ++GG                                             SPE+ D SIEALGDA  A GA  LLRVMRREGFHASPRAYRSV+YACAR+GLL EA+ LAKEM++           + D    +R R + PPS  N     E  +   +TRA     +GD A +G    F  +G       L  E   E R   ++S  V       G  +G+                              +DL +VYNCI+CNFARAA
Sbjct:  572 GINRRRYTDWAPELANIARLLQNGPGSHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXSPEELDCSIEALGDADDAGGATNLLRVMRREGFHASPRAYRSVVYACARVGLLDEAMTLAKEMQSSSSSAFAAQRQQADVEPPKRLREQEPPSSFNDDCEVENRSIAEETRADEPPALGDGASLGAAASFAERG-------LEEETEREARNGGVASELVPRRVPSTGAASGEDCVEEGSLVASNDRGNGNLGAVNEDEDGAEFDLAMVYNCIICNFARAA 854
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7852.15877.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI48_ECTSI1.380e-2734.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 1..22
e-value: 0.21
score: 11.9
coord: 148..176
e-value: 0.0038
score: 17.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..25
e-value: 0.0015
score: 16.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..24
score: 8.594
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 145..179
score: 9.701
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 110..144
score: 6.566
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..44
e-value: 2.9E-6
score: 28.7
coord: 98..199
e-value: 4.9E-9
score: 37.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7852contigH-paniculata_contig7852:180..1268 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7852.15877.1mRNA_H-paniculata_contig7852.15877.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7852 180..1268 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7852.15877.1 ID=prot_H-paniculata_contig7852.15877.1|Name=mRNA_H-paniculata_contig7852.15877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=308bp
CSQAGHWERALALLADMRRQGVFPSRVTYTAAVAGLNRPRYAEWGPKLER
LAMLLQQRTDTNGGFAGDTSGRSDWRNETRGREGEPAGLDDSKRSDPPNS
LRNALNSGPSPEDFDGSIEALGDAGHANGAACLLRVMRREGFHASPRAYR
SVIYACARIGLLSEAVALAKEMEAEGDCPRRRRRRNRSPPSVLNSMSATE
QATDLNQTRALVGDFALVGFGVQGGTDDAAALSSEEAGEGRREPLSSRKV
EVDAQVDGDQTGKGSASSTTTTATSLSGHEAKVEAEDDEDYDLGVVYNCI
VCNFARAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf