mRNA_H-paniculata_contig7852.15877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7852.15877.1
Unique NamemRNA_H-paniculata_contig7852.15877.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7852.15877.1 vs. uniprot
Match: D8LI48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI48_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.380e-27
Identity = 103/296 (34.80%), Postives = 130/296 (43.92%), Query Frame = 1 
Query:  103 GLNRPRYAEWGPKLERLAMLLQQRTDTNGGFAGDTSGRSDWRNETRGREGEPAGLDDSKRSDPPNSLRNALNSGPSPEDFDGSIEALGDAGHANGAACLLRVMRREGFHASPRAYRSVIYACARIGLLSEAVALAKEMEA-----------EGDCPRRRRRRNRSPPSVLNSMSATEQATDLNQTRA----LVGDFALVG----FGVQGGTDDAAALSSEEAGEGRREPLSSRKVEVDAQVDGDQTGKXXXXXXXXXXXXXXXXXXXXXXXXXXX---YDLGVVYNCIVCNFARAA 924
            G+NR RY +W P+L  +A LLQ    ++GG                                             SPE+ D SIEALGDA  A GA  LLRVMRREGFHASPRAYRSV+YACAR+GLL EA+ LAKEM++           + D    +R R + PPS  N     E  +   +TRA     +GD A +G    F  +G       L  E   E R   ++S  V       G  +G+                              +DL +VYNCI+CNFARAA
Sbjct:  572 GINRRRYTDWAPELANIARLLQNGPGSHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXSPEELDCSIEALGDADDAGGATNLLRVMRREGFHASPRAYRSVVYACARVGLLDEAMTLAKEMQSSSSSAFAAQRQQADVEPPKRLREQEPPSSFNDDCEVENRSIAEETRADEPPALGDGASLGAAASFAERG-------LEEETEREARNGGVASELVPRRVPSTGAASGEDCVEEGSLVASNDRGNGNLGAVNEDEDGAEFDLAMVYNCIICNFARAA 854
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7852.15877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI48_ECTSI1.380e-2734.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7852contigH-paniculata_contig7852:180..1268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue2.9e-27
Seed eggNOG ortholog2880.D8LI48
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-26_005210.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size924
Cds size924
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7852.15877.1prot_H-paniculata_contig7852.15877.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7852 180..1268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.1424353-CDS-H-paniculata_contig7852:179..3611622930977.1424353-CDS-H-paniculata_contig7852:179..361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7852 180..361 +
1691481535.3648884-CDS-H-paniculata_contig7852:179..3611691481535.3648884-CDS-H-paniculata_contig7852:179..361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7852 180..361 +
1622930977.1582577-CDS-H-paniculata_contig7852:421..8551622930977.1582577-CDS-H-paniculata_contig7852:421..855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7852 422..855 +
1691481535.3770547-CDS-H-paniculata_contig7852:421..8551691481535.3770547-CDS-H-paniculata_contig7852:421..855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7852 422..855 +
1622930977.1775882-CDS-H-paniculata_contig7852:960..12681622930977.1775882-CDS-H-paniculata_contig7852:960..1268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7852 961..1268 +
1691481535.3874328-CDS-H-paniculata_contig7852:960..12681691481535.3874328-CDS-H-paniculata_contig7852:960..1268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7852 961..1268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7852.15877.1

>prot_H-paniculata_contig7852.15877.1 ID=prot_H-paniculata_contig7852.15877.1|Name=mRNA_H-paniculata_contig7852.15877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=308bp
CSQAGHWERALALLADMRRQGVFPSRVTYTAAVAGLNRPRYAEWGPKLER
LAMLLQQRTDTNGGFAGDTSGRSDWRNETRGREGEPAGLDDSKRSDPPNS
LRNALNSGPSPEDFDGSIEALGDAGHANGAACLLRVMRREGFHASPRAYR
SVIYACARIGLLSEAVALAKEMEAEGDCPRRRRRRNRSPPSVLNSMSATE
QATDLNQTRALVGDFALVGFGVQGGTDDAAALSSEEAGEGRREPLSSRKV
EVDAQVDGDQTGKGSASSTTTTATSLSGHEAKVEAEDDEDYDLGVVYNCI
VCNFARAA
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mRNA from alignment at H-paniculata_contig7852:180..1268+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7852.15877.1 ID=mRNA_H-paniculata_contig7852.15877.1|Name=mRNA_H-paniculata_contig7852.15877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1089bp|location=Sequence derived from alignment at H-paniculata_contig7852:180..1268+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCTCAAGCGGGGCACTGGGAGCGCGCGCTCGCTCTTCTCGCGGACAT
GCGCAGACAGGGCGTATTCCCGAGCAGGGTAACTTACACGGCGGCGGTCG
CCGGCCTCAACCGACCGCGCTATGCGGAGTGGGGTCCCAAGCTCGAAAGG
CTGGCGATGTTGCTGCAACAACGGACCGACACGTCATGGGAAAACCGCCG
CTATCGTAGGAATGAGCGGCGAAGAGAAGATCGCGAAGGCAGAAACGGGG
GTTTTGCTGGGGACACCTCTGGAAGGTCAGATTGGAGAAATGAGACCCGT
GGACGGGAGGGAGAGCCAGCCGGCCTAGACGACAGTAAGCGGAGCGATCC
CCCGAACAGTTTGCGGAACGCTTTGAATAGTGGTCCGTCTCCCGAGGATT
TCGACGGTTCGATCGAGGCTCTAGGAGATGCCGGACACGCGAATGGCGCT
GCCTGCCTGTTGCGGGTTATGCGGCGGGAGGGTTTCCATGCATCTCCAAG
GGCGTACCGATCCGTGATCTATGCTTGCGCTAGGATTGGCCTCCTTAGCG
AAGCCGTTGCCTTGGCGAAGGAAATGGAAGCTGAGGGTGACTGCCCGAGG
CGGCGCCGACGGCGAAATCGATCACCGCCGTCGGTGTTGAATTCGATGTC
CGCCACCGAGCAAGCAACAGATCTCAGTGATCGTCCGGCAGCGGGCATCG
ACCGCGCTTCTGGCGAGATGATGGGCAAAACCCAGACTGAGGGGGCAAGC
GTAGGCATTGTTGGCACCGGTAACAGGGTAGACCAAACGCGTGCACTTGT
TGGTGATTTTGCACTGGTCGGGTTCGGCGTACAAGGGGGCACTGATGATG
CAGCGGCGCTATCGTCCGAGGAAGCAGGGGAGGGGCGGCGAGAGCCCTTG
AGCAGCAGGAAGGTAGAGGTGGACGCGCAGGTCGATGGCGATCAGACAGG
CAAAGGCTCTGCAAGCAGTACGACAACGACGGCGACATCGTTGTCTGGTC
ACGAGGCCAAAGTGGAGGCAGAAGATGACGAAGACTACGATCTAGGCGTC
GTGTATAACTGTATTGTGTGCAACTTTGCCCGCGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig7852:180..1268+

>mRNA_H-paniculata_contig7852.15877.1 ID=mRNA_H-paniculata_contig7852.15877.1|Name=mRNA_H-paniculata_contig7852.15877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1848bp|location=Sequence derived from alignment at H-paniculata_contig7852:180..1268+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCTCAAGCGGGGCACTGGGAGCGCGCGCTCGCTCTTCTCGCGGACAT
GCGCAGACAGGGCGTATTCCCGAGCAGGGTAACTTACACGGCGGCGGTCG
CCGGCCTCAACCGACCGCGCTATGCGGAGTGGGGTCCCAAGCTCGAAAGG
CTGGCGATGTTGCTGCAACAACGGACCGACACTGCTCTCAAGCGGGGCAC
TGGGAGCGCGCGCTCGCTCTTCTCGCGGACATGCGCAGACAGGGCGTATT
CCCGAGCAGGGTAACTTACACGGCGGCGGTCGCCGGCCTCAACCGACCGC
GCTATGCGGAGTGGGGTCCCAAGCTCGAAAGGCTGGCGATGTTGCTGCAA
CAACGGACCGACACAAACGGGGGTTTTGCTGGGGACACCTCTGGAAGGTC
AGATTGGAGAAATGAGACCCGTGGACGGGAGGGAGAGCCAGCCGGCCTAG
ACGACAGTAAGCGGAGCGATCCCCCGAACAGTTTGCGGAACGCTTTGAAT
AGTGGTCCGTCTCCCGAGGATTTCGACGGTTCGATCGAGGCTCTAGGAGA
TGCCGGACACGCGAATGGCGCTGCCTGCCTGTTGCGGGTTATGCGGCGGG
AGGGTTTCCATGCATCTCCAAGGGCGTACCGATCCGTGATCTATGCTTGC
GCTAGGATTGGCCTCCTTAGCGAAGCCGTTGCCTTGGCGAAGGAAATGGA
AGCTGAGGGTGACTGCCCGAGGCGGCGCCGACGGCGAAATCGATCACCGC
CGTCGGTGTTGAATTCGATGTCCGCCACCGAGCAAGCAACAGATCTCAAA
ACGGGGGTTTTGCTGGGGACACCTCTGGAAGGTCAGATTGGAGAAATGAG
ACCCGTGGACGGGAGGGAGAGCCAGCCGGCCTAGACGACAGTAAGCGGAG
CGATCCCCCGAACAGTTTGCGGAACGCTTTGAATAGTGGTCCGTCTCCCG
AGGATTTCGACGGTTCGATCGAGGCTCTAGGAGATGCCGGACACGCGAAT
GGCGCTGCCTGCCTGTTGCGGGTTATGCGGCGGGAGGGTTTCCATGCATC
TCCAAGGGCGTACCGATCCGTGATCTATGCTTGCGCTAGGATTGGCCTCC
TTAGCGAAGCCGTTGCCTTGGCGAAGGAAATGGAAGCTGAGGGTGACTGC
CCGAGGCGGCGCCGACGGCGAAATCGATCACCGCCGTCGGTGTTGAATTC
GATGTCCGCCACCGAGCAAGCAACAGATCTCAACCAAACGCGTGCACTTG
TTGGTGATTTTGCACTGGTCGGGTTCGGCGTACAAGGGGGCACTGATGAT
GCAGCGGCGCTATCGTCCGAGGAAGCAGGGGAGGGGCGGCGAGAGCCCTT
GAGCAGCAGGAAGGTAGAGGTGGACGCGCAGGTCGATGGCGATCAGACAG
GCAAAGGCTCTGCAAGCAGTACGACAACGACGGCGACATCGTTGTCTGGT
CACGAGGCCAAAGTGGAGGCAGAAGATGACGAAGACTACGATCTAGGCGT
CGTGTATAACTGTATTGTGTGCAACTTTGCCCGCGCGGCGACCAAACGCG
TGCACTTGTTGGTGATTTTGCACTGGTCGGGTTCGGCGTACAAGGGGGCA
CTGATGATGCAGCGGCGCTATCGTCCGAGGAAGCAGGGGAGGGGCGGCGA
GAGCCCTTGAGCAGCAGGAAGGTAGAGGTGGACGCGCAGGTCGATGGCGA
TCAGACAGGCAAAGGCTCTGCAAGCAGTACGACAACGACGGCGACATCGT
TGTCTGGTCACGAGGCCAAAGTGGAGGCAGAAGATGACGAAGACTACGAT
CTAGGCGTCGTGTATAACTGTATTGTGTGCAACTTTGCCCGCGCGGCG
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