mRNA_H-paniculata_contig7838.15867.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7838.15867.1
Unique NamemRNA_H-paniculata_contig7838.15867.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Match: D8LST0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST0_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 1.720e-71
Identity = 112/171 (65.50%), Postives = 134/171 (78.36%), Query Frame = 1 
Query:   49 MASTLNKIISHKAVWHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDCGDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEILRKAVMGMLPKNELRRRMTAKLRIYPGPCHLHEDQLPPDTAECLLVEQKRTFNDEVVEEVDELSPEEQAEW 561
            MA+TLN+II+HKA WHLIDA GQ+VGRLA QIAPI+RGKHKPTFC N+DCGD VVV+NA  VEF+G KW  K+Y++HSGFPGGLKERPAD QL RKPEEILR+AVMGMLPKN LR+RM  KL IYPGP H H+D+LP D+A+ LL +  R   D    ++ +   +   EW
Sbjct:    1 MATTLNRIINHKAKWHLIDASGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKVYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVTKLLIYPGPSHPHDDRLPTDSAQSLLEKSDRKLIDRRPTDIKKYQDDNYIEW 171
[Close]
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Match: A0A835ZK23_9STRA (Ribosomal protein L13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK23_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.920e-52
Identity = 84/127 (66.14%), Postives = 102/127 (80.31%), Query Frame = 1 
Query:   76 SHKAVWHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDCGDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEILRKAVMGMLPKNELRRRMTAKLRIYPGPCHLHEDQL 456
            SH+ +WHL+DA+ Q+VGRLA QIAP+L GKHKPT+  N  CGD VVVINA DV+F+GKKW  K+Y++HSG+PGGLKER    QL R+PEEILR+AVMGMLPKN+LR RM  +L+IY GP H HE  L
Sbjct:   11 SHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDL 137
[Close]
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Match: A0A448Z8K8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8K8_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.580e-45
Identity = 82/132 (62.12%), Postives = 101/132 (76.52%), Query Frame = 1 
Query:   76 SHKAVWHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDCGDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEILRKAVMGMLPKNELRRR-MTAKLRIYPGPCHLHEDQLPPDT 468
            S +  WHL+DA+ Q VGRLA QI+ IL+GKHKPTF  N+D GD VVVINA+ V+FSGKKW  K+Y++HSG+PGGLKER A   + RKPEEIL+KAV+GML +N LR + +  +LRIY GP H H  QLPP T
Sbjct:    7 SLQRAWHLVDAKNQTVGRLAGQISQILKGKHKPTFRPNKDMGDHVVVINAEKVQFSGKKWNDKLYRWHSGYPGGLKERSARDMMARKPEEILKKAVLGMLKRNNLRHQSIEPRLRIYSGPDHPHTAQLPPGT 138
[Close]
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Match: A0A1E7F5Z3_9STRA (Ribosomal protein L13 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5Z3_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.790e-45
Identity = 78/132 (59.09%), Postives = 100/132 (75.76%), Query Frame = 1 
Query:   76 SHKAVWHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDCGDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEILRKAVMGMLPKNELRRR-MTAKLRIYPGPCHLHEDQLPPDT 468
            S +  WHL+DA  Q VGRLA QI+ IL+GKHKPTF  N+D GD V+VINA+ V FSGKKW  K+Y++H+G+PGGLKER A   + R+PEE+L+KA++GML +N LR + +  +LRIY GP H H  QLPPDT
Sbjct:    7 SLQRAWHLVDASNQTVGRLAGQISQILKGKHKPTFRPNKDMGDHVIVINAEKVHFSGKKWTDKVYRWHTGYPGGLKERSAKEMMERRPEEVLKKAILGMLKRNNLRHQSIEPRLRIYVGPDHPHTAQLPPDT 138
[Close]
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Match: A0A3F2S0U4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S0U4_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.790e-45
Identity = 74/119 (62.18%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:   82 KAVWHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDCGDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEILRKAVMGMLPKNELRRRMTAKLRIYPGPCH 438
            K VWH++DA+GQ++GRLA+Q+APILRGKHKPT+  N DCGD+VVVINAKD+E +G KW  K+Y++H+G PGGLK+R A     RKPEE+LRKAV GMLPKN +R     KL+I+ G  H
Sbjct:    9 KVVWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIELTGNKWNNKLYRWHTGHPGGLKQRTAKDLFERKPEEVLRKAVFGMLPKNRMRALQDKKLKIFLGDEH 127
[Close]
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Match: A0A7S1CY61_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CY61_CYCTE)

HSP 1 Score: 162 bits (409), Expect = 3.520e-44
Identity = 76/131 (58.02%), Postives = 99/131 (75.57%), Query Frame = 1 
Query:   76 SHKAVWHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDCGDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEILRKAVMGMLPKNELRRRMTAK-LRIYPGPCHLHEDQLPPD 465
            S +  WHL++A  Q VGRLA Q+A +L+GKHKPT+  N DCGDFVVV+NA+ V+FSGKKW  K+Y++H+G+PGGLK+R A+ QL + PE IL+KA++GML +N+LR     K LRIY G  H H  QLPPD
Sbjct:    7 SVQQAWHLVNAESQTVGRLATQVASLLKGKHKPTYRPNSDCGDFVVVVNAEKVDFSGKKWKDKLYRWHTGYPGGLKQRRAEEQLEKHPELILKKAILGMLTRNKLRHGYLEKRLRIYTGETHPHTAQLPPD 137
[Close]
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Match: H3G8X3_PHYRM (Uncharacterized protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3G8X3_PHYRM)

HSP 1 Score: 160 bits (405), Expect = 5.170e-44
Identity = 72/119 (60.50%), Postives = 92/119 (77.31%), Query Frame = 1 
Query:   82 KAVWHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDCGDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEILRKAVMGMLPKNELRRRMTAKLRIYPGPCH 438
            K  WH++DA+GQ++GRLA+Q+APILRGKHKPT+  N DCGDFVVVINAKD+  +G KW  K+Y++H+G PGGLK+R A     RKPE++LRKAV GMLPKN +R     KL+I+ G  H
Sbjct:    9 KVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDFVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFERKPEDVLRKAVFGMLPKNRMRALQDKKLKIFMGDEH 127
[Close]
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Match: A0A7S2UNE7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNE7_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.130e-44
Identity = 74/124 (59.68%), Postives = 97/124 (78.23%), Query Frame = 1 
Query:   91 WHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDCGDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEILRKAVMGMLPKNELRRR-MTAKLRIYPGPCHLHEDQLP 459
            WHL+DA+ Q VGRLA Q+APIL+GKHKPT+  + DCGD VV+INA+ V FSGKKW  K+Y++H+GFPGGLK+R A   L RKPE+IL+KA++GML + +LR + +  +L+IY GP H H  QLP
Sbjct:   20 WHLVDAQSQTVGRLATQLAPILKGKHKPTYKPHTDCGDIVVIINAEKVHFSGKKWNDKLYRWHTGFPGGLKQRTAKEMLQRKPEDILKKAILGMLSRTKLRHKYIEPRLKIYTGPIHPHSAQLP 143
[Close]
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Match: K3W736_GLOUD (Uncharacterized protein n=3 Tax=Oomycota TaxID=4762 RepID=K3W736_GLOUD)

HSP 1 Score: 159 bits (403), Expect = 1.020e-43
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:   82 KAVWHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDCGDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEILRKAVMGMLPKNELRRRMTAKLRIYPGPCHLHEDQL 456
            K  WH++DA+GQ++GRLA+Q+APILRGKHKPTF  N DCGD+VVVINAKD+  +G KW  K+Y++H+G PGGLK+R A     RKPEE+LRKAV GMLPKN +R     KL+I+    H   +Q+
Sbjct:    9 KVAWHVVDAKGQVLGRLASQLAPILRGKHKPTFAPNVDCGDYVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRSAKELFERKPEEVLRKAVFGMLPKNRMRALQDKKLKIFMDEHHDFVEQV 133
[Close]
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Match: A0A7S4HN68_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HN68_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.090e-43
Identity = 73/123 (59.35%), Postives = 94/123 (76.42%), Query Frame = 1 
Query:   91 WHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDCGDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEILRKAVMGMLPKNELRRR-MTAKLRIYPGPCHLHEDQL 456
            WHLIDA  Q VGRLA  +APILRGKHKPT+  N DCGDFVV++NA+ V FSG KW  K+Y++H+G+PGGLKERPAD  L RKPE +L+KA++GM+ K  L+   +  +L++Y GP H H+ QL
Sbjct:   12 WHLIDAADQTVGRLAATVAPILRGKHKPTYRPNADCGDFVVIVNAEKVHFSGNKWKDKLYRWHTGYPGGLKERPADMMLERKPESVLQKAILGMVHKGNLKHGYIEPRLKVYAGPYHPHKSQL 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7838.15867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST0_ECTSI1.720e-7165.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZK23_9STRA1.920e-5266.14Ribosomal protein L13 n=1 Tax=Tribonema minus TaxI... [more]
A0A448Z8K8_9STRA1.580e-4562.12Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7F5Z3_9STRA1.790e-4559.09Ribosomal protein L13 n=1 Tax=Fragilariopsis cylin... [more]
A0A3F2S0U4_9STRA2.790e-4562.18Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A7S1CY61_CYCTE3.520e-4458.02Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
H3G8X3_PHYRM5.170e-4460.50Uncharacterized protein n=24 Tax=Peronosporaceae T... [more]
A0A7S2UNE7_9STRA7.130e-4459.68Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K3W736_GLOUD1.020e-4358.40Uncharacterized protein n=3 Tax=Oomycota TaxID=476... [more]
A0A7S4HN68_9STRA1.090e-4359.35Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7838contigH-paniculata_contig7838:3410..9928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.9
Seed ortholog evalue9.5e-60
Seed eggNOG ortholog2880.D8LST0
Preferred nameMRPL23
KEGG koko:K02871
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0102@1,KOG3203@2759
Ec32 ortholog descriptionRibosomal protein L13
Ec32 orthologEc-15_002740.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons4
Model size1393
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7838.15867.1prot_H-paniculata_contig7838.15867.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7838 4062..9880 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.6816063-UTR-H-paniculata_contig7838:3409..40611622930975.6816063-UTR-H-paniculata_contig7838:3409..4061Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7838 3410..4061 -
1691481534.8206208-UTR-H-paniculata_contig7838:3409..40611691481534.8206208-UTR-H-paniculata_contig7838:3409..4061Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7838 3410..4061 -
1622930975.8255394-UTR-H-paniculata_contig7838:9880..99281622930975.8255394-UTR-H-paniculata_contig7838:9880..9928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7838 9881..9928 -
1691481534.8866427-UTR-H-paniculata_contig7838:9880..99281691481534.8866427-UTR-H-paniculata_contig7838:9880..9928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7838 9881..9928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.6980426-CDS-H-paniculata_contig7838:4061..44571622930975.6980426-CDS-H-paniculata_contig7838:4061..4457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7838 4062..4457 -
1691481534.8343005-CDS-H-paniculata_contig7838:4061..44571691481534.8343005-CDS-H-paniculata_contig7838:4061..4457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7838 4062..4457 -
1622930975.7199385-CDS-H-paniculata_contig7838:6656..67371622930975.7199385-CDS-H-paniculata_contig7838:6656..6737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7838 6657..6737 -
1691481534.8525116-CDS-H-paniculata_contig7838:6656..67371691481534.8525116-CDS-H-paniculata_contig7838:6656..6737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7838 6657..6737 -
1622930975.7627084-CDS-H-paniculata_contig7838:7575..77221622930975.7627084-CDS-H-paniculata_contig7838:7575..7722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7838 7576..7722 -
1691481534.86739-CDS-H-paniculata_contig7838:7575..77221691481534.86739-CDS-H-paniculata_contig7838:7575..7722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7838 7576..7722 -
1622930975.8096821-CDS-H-paniculata_contig7838:9811..98801622930975.8096821-CDS-H-paniculata_contig7838:9811..9880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7838 9812..9880 -
1691481534.876708-CDS-H-paniculata_contig7838:9811..98801691481534.876708-CDS-H-paniculata_contig7838:9811..9880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7838 9812..9880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7838.15867.1

>prot_H-paniculata_contig7838.15867.1 ID=prot_H-paniculata_contig7838.15867.1|Name=mRNA_H-paniculata_contig7838.15867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MASTLNKIISHKAVWHLIDARGQLVGRLANQIAPILRGKHKPTFCANEDC
GDFVVVINAKDVEFSGKKWAGKIYKYHSGFPGGLKERPADWQLNRKPEEI
LRKAVMGMLPKNELRRRMTAKLRIYPGPCHLHEDQLPPDTAECLLVEQKR
TFNDEVVEEVDELSPEEQAEWDKFKAEAYAWQIEKFGKVLGGTEEENEAK
EREEEELEKKKALAARAKAKESRGPARKNP*
back to top

mRNA from alignment at H-paniculata_contig7838:3410..9928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7838.15867.1 ID=mRNA_H-paniculata_contig7838.15867.1|Name=mRNA_H-paniculata_contig7838.15867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6519bp|location=Sequence derived from alignment at H-paniculata_contig7838:3410..9928- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCGGTGTGGGGCAGAGCAACCTGCCGAACAACCGCGCCTTTTCAGAAT
GGCAAGTACTCTGAACAAGATCATAAGCCATAAAGCTGTGTGGCATCTCA
TAGATGCTAGAGGCCAGGTAAGTCATCAAAACGAGAGAGGTATTTTGCGT
TTGCTTGGTCGTGAGTTTGGGATTGGCATTTGAAGGCCTCTTACTGCCTT
GGGTTGACTTGAGTGAAGATATCAGCAGGACCGTGGAGCACCCTCAGAGT
TGATTCGTTGTGGACACTGGCTGTGCGATAAATTGATGTGAAAGTTGAAT
ATTTTCGTGATTGCTCTGTGCTTTCAGTTGCGTATATGTCATTATGTCTA
TACAATGGACTGTGCGATTATCGCCCAATGTCTTCTGCGCTGCAGTCAGC
TCTGTAGGGCTAAGATGGTAATTATGGAGGGTGTTGAGTCCAGCATAGAC
CCAAATGAGACACGAACATATCCTAAAAACACCCGAGTGCCTGTCTTCAT
GGCTTTAAGCCTCAAGATTGAATCTGTGTGCTGCACCTGTTGCCTACTAC
AATAATGATACATTTATGAACCTAACTGGTGCCATGCCGATGTGCTGTGT
CTGGTCTGCAAGCCCGCCTCTTATGTCTGGGGTTGGCGCGTTCCTTGGCT
CTGGTGTCGCACACATGATGGACGGTTGCAACCATGCCGTGTACATGCGT
CTAGCTGACGCCATGTCGATGTGCAGTGTTTGCTATTGTCTGTATCGTGT
CGGCCGCTAAGGTGATACTATTTTTTCCAACTGAAAATTTCCGCATGTGC
CATCCCCATGCGGTTTCCTTACACGTGAGATAACACCCCCTTCCACAACC
GGCCATCAATCCGAACAAATGGGCTCCGATGTCAAGGATCCATGAAGGAG
CATATCCATGGAACCCCCGTCACCTACCCCATTTTGGAAGTGAATTTTCG
AGGATGTTGAGAAACAGCGGATTATTTTCTCTCATTTTTCTGCACCGGAT
CTCAACAAAGTGGCAAATTGTGGAGGGGCAGCTTCTCCCCTTTGATCAAC
TCGGAGATCTGTGGACACTGATTGGTCAGTGCTTCCCGAGAAGATACGGA
GAACGGACTGCGGCTTCCGACAGTAAGCGCGTAGAGGAACGTGAAGTACG
GCAACCAATAGCACTCCAGCCCATCAGACAGAGCGAGGGTTGGTTACACC
GCGCGACTACACTATTATTGTGTCCCGTTGTGTTTAAGGGGTCGGGTGCG
TTGTTACATTTCATCACCTTGCTAAGTATCGTAAAACCTGTTGATTGCAG
CCAGAGGGAGTGAATGCAGTCACAATAATGCATCTCATCTTGACTCCACA
AGAAGACCGTAATGCACCCACGTGATCTAGTTCAGCCTGTCATTAACCCG
TTGTTATGCATACCATCGGGGCTGCATTCACTTGATGAGGTGCTGCTGCA
TTCGATAGAAGAGAAGATCTGAGCGCCTTCGTGGTGCTGGCGGCGTATAT
GTTGTGTGTTGCAACTTGTAGTCGCCACTCTGCCCGGGCGGCCTTGTAAG
CTACGGTGCATATGTAAGGCACCTAGTCAATCTCAACCTGAAGGCAGTAG
TGTCCGGTAGGTTACGACCAAAGCTGCATGCAGCATAGGTAGCTGAGGAA
GGTAATCAAGCACTCTCAAGAACATCGCTTGGAAATTTCGTGTACAGAGA
GTCACAGTACATACAGGCGATTAATTCGGTTGGGAGTGTCCTTTTCTTTT
ATCTTCATTTGGTGACCCCAACAATTAAAAAGTTGCCGATTTTGCTATTC
TCGGGCCGGCGTGTTGTCAACTAAAGTCGCAGAAGCCACTGTACTACACC
TACACCGATATTGTCTATTCAAAGCAGACTCCACTTCTCGAATTTTAGTA
ACCGCATACGAACCCAGCGCTTGGCCAATGCTGAAAGTGCCGGTGCTTCC
CGTTCCTGCTGTCGCGATACCTAGCAGCAATTGTATACTGATGATGAGTA
TTACCTACAACATGATCATCATCCAAATACGATATTCGGAACTCCATGTG
TGCCCCAGCAGCATGAAATTCCATTTGTGCTTTGTTTCACAGGGTTCGGT
TTCGAGGCCTTCATAATGATGATACCTCCTCAGCTTCACAACAACGAACT
TGCGCCGCCGCCGCTGCCCCCCCGCTCTCGACCCACTGCACCGTCCCCGG
TACTAGCTTGTCGGCCGTCTGGCCAATCAGATAGCCCCTATCCTTCGGGG
GAAGCATAAGCCTACTTTCTGCGCCAATGAAGACTGTGGTGACTTCGTCG
TGGTCATCAATGCGAAGGATGTGGAGTTTAGCGGAAAGAAATGGGCAGGG
AAAGTAAGGAAAGAGTGTCTCCCCACACATTCCGGAAGAGGGAGGGGCAC
ACGGGATGACCTTTGTTGAGGATAGAGGAGCCCCCCCCACAATCAGGCAA
AAAGGGAAGGGGGACACGGTGTGAGCGTTGTCAGTCGCGTCTGGTGGTTG
TTTATGTTATGGATTCCTGCAGAGTCCCTGAGGAGCGCGATGAAATGCTG
TTTATGGTGCTGATTTTGTGAGGGTTGATGAATGGTTTTTGCCGGTAGCC
GAAGCGCGAACATATGTTGATACCCGACCATTGCCGGAGCCTTGTTTTCT
GCCTTCATTTGTATTTATTGCTCCTGTGGCCTCGTGTGTATGTGGCATTA
TACATGTCGTGGTCGTGTGGTCGTGAATTATGCGCCTTGTGGATGGGTCC
TATTTGCGCTGATCATGTCGTTATTGCTGTTGTCTGTCGCTTACGTATCC
CCTCTGGCTGTATCGCAGTTCTCGCCGGGCGTTTTGGTGTTGGCACTTGG
TGTGAGATATTGCCTACATGAAGTGCGTAATTCTATTTGGCGACTACCGC
ACGGGGGTAGAGTATATGTTTTTTGTAGTAGAACTGCTTCATCGAGAATC
GCATGCGGAATTATTGACAACATGAGACCACTTCTGATCGTGTTGATGGG
TAGTTTGTGTCCTACCAGGCATTTTTTGCAACAGTGTTGAGCTGTTCCAA
ATGAGCACTCGACGATGATGGTAGCGGTGGCGAGGACGATAGCTTGAAAA
TCTTGACCTTCCCAAAGGATAACTTATTAACTGCATCTCAAACGTTTCCG
CTATTGTTTTTCACATTGCCATCGGAAAATGCGCTCGTCAGATTTATAAA
TACCATTCCGGATTTCCTGGCGGACTGAAAGAACGACCGGCAGATTGGCA
GCTCAACCGGAAGCCCGAGGAGGTACGTGTGCGGGATGGATGCGACCCGG
GGGTTGAGGGGGAGCTGGAGTTAGGGGATTACCCTCTTGACGCACGCAGA
GGAGTGAGGTTTACCGTATTTATTGTGTTTTCAAGCTATGAGTCCTTGAG
CTACGGAATGTATTTTGGTACTTGGCTCTTGGATGAGTTCGGTCCAAGGT
GATTCGTATAGCGCTGCTTCGCTAGATGCACCTCCTCCCCCAACACTTTT
CTTGCATACAAATGCTTTGCTAGGTCTGCTGACCTCCCAGCCCCCACCCT
GGCGCAGCCTATCCTTGTTTTTGTAAGAAAGTCGTACCAACATTTCAAGG
GTCATTACAATGCAATACCAATGCCAGTATTTTGGGAATAAACAGAGGTG
ATACTGGAGATGCACTCGGTAATTTCGGAATTTACCATGTTGCATCCCCC
GGGCAAATACGAATGGTGCATTCGTAACAGCTTCAGCGCTGTAAACATCT
GTAACGGTCTTCGCTGAACACGAATAAGTTGTAGATAATCTGTAGTAGAA
GGTTGGACGAGCGACTATGCGTCGAATGAAAGTCCGATAAGTTGCTGTGT
CACGTGTATTCATTTGCAGGAATGCTAACCCTAACCCTTATCCTTCAGGA
AAAATGCAGTATTTTTGCTGCAACTTCCTGGTTTTTCAATATTTTTGACA
ACAACCTGAGAAGTGCTTTTTGTGTGTGCACTCGCGACACAGGTGGAAAA
ATCTGCATATTTGTTTTGCCGTACTTGATGGTGGAATAGCGTTCAAAATT
GTGTTTTGACCCGTTTTGTGGCCGTGCTCTAGAACCCAACGTAAAATTTA
AGGGTACCCATCAATTCAATGCGTTTTTGAAAAAAAATTAATCCTCTTTC
TATTGACTAGTTTTGAGAACAGTGCAAATTCTCATGTATCCTGCTTGTTC
CCTCTCTTTCTCAATATTAAGCAAAATAGCTTGTCCCGATACTGCCGAGT
AACTCATGCATCTCGGTCTCACTGCCTCACCATCCTTGGAGCGCACATTG
CTCAACAATATTTGACCGTTCATGTTACTTTTTTGTTTTTCCACATGGGT
TCTTTAATGTACTTTTTGTTTTTCTGTTACTCCAGTATTCCACACGTGAT
CGAATCGTCCGTAAGGTTGGTCATAGCGGATCGTGGATGAAGCCGCTTAC
AAATCGTTTAATTATCTATATATTTATTTCATACTAGTAGGCGGGCCGCA
GCTACGCCAGTAATTTAGGAAATGGGATGTTCCGTGTTATGTGACACTTC
AAAGAACACACTTTGATGGACGAAAAAATTGAAAGTGTTCCGAAAGGAAA
ATCATCATCACCACTATCATCATCAGGGTTGTGGCCTGGTTGGATAAGCA
ATAAACTGGTTAACGGGGGGCGAGTCTGTGTTTCAAGCTTGACTGAAAAA
AACACTACAGGCACGTAATATAGAAATAAAATCCAACCTTCCAACACCAT
GATGTGGCGAAAATATGCTGGAAAAGTATCTTACAGCTGCCTTTTCTGCC
ATGCCGGACCGCACTTGATTTGCGCGCCCACGACAGCAGCTGTCGATGAC
GTGACCTAAATATTTTACTCTCGCAGGATGAACTAACTGCTGCCTGCTGC
TGTGTAGGTGGGGAATACAGTGAACAAATTCCGAGAAAATCTATCATAAA
TTCTAAGCATCGGGTAGATATTATGATGTGATGATAACACTGCTACATCA
TACGCAGTGTACAGCATGCAGCGGGTGCTAGGAGTCGGTGAAAATTCTAA
AGTGCATTGATCACCATGAAGATGACTAGTATGTTCGAACCAGCAATAAT
TAGCAGCATGGCGTGGGTTTTGTAGCTTGAAAAGAGTTGACTTGGATATG
TCTTACACACTTCCGGTGTCCTCCAAATCACTGTGATCACCATCAGTGCC
CACAAACGAGCTCATGGCTTGACGTGGTTGGGTGTCTGGCAAAACACCGG
ATACTGTTTGGGGCGTGCTGGAAGTTTCAGCGAGCCAGAAACGGCATGTA
TTGGAAAATGGTTTGATAGCTGGGTTGTTTGAATGTTGAGTGTTTCAGTT
ATGGTGAAACTGGTCCGTTGAAGCTGGCGCCAGTTCACAAGCCTAACTAA
TAACCTTATTAACTCATGATGTTTTATATTTATTTTATTTTTTATTGCTG
TTGAAATAAATCGGCAATCAGATTCTCCGAAAGGCGGTAATGGGCATGCT
TCCGAAGAACGAGCTACGGAGGCGGATGACGGCCAAGCTGCGGATCTACC
CCGGTCCTTGCCACCTGCATGAGGACCAACTACCGCCGGACACGGCCGAA
TGTCTCCTCGTGGAGCAGAAGCGTACCTTCAATGATGAGGTCGTGGAAGA
GGTAGACGAGTTGTCTCCCGAAGAGCAAGCCGAGTGGGACAAGTTCAAAG
CTGAAGCATATGCGTGGCAGATCGAGAAGTTTGGGAAAGTACTGGGCGGA
ACAGAGGAAGAGAATGAGGCTAAAGAGAGAGAAGAGGAGGAGCTGGAAAA
AAAGAAGGCCCTTGCCGCCAGGGCAAAAGCAAAGGAGAGTAGAGGCCCGG
CGAGGAAAAATCCATAGCACAGTCATCCTACTGACAAGAGTTGGGTTACC
TGAAAATATCTCTTCAGCGCTAAAGTGGTAATTTCTCTAGTAGATTTTTT
TATTTTTTTATTCTCAAAATGACTGTCAACCACAGATATGACCATGCTCT
GGCGCTAAAAGGGTGACATGTAACTTCCTTGTGGGGTTTGAGGAATAGAG
CGCGTGATCAACTCACTGCATAGTGCGGAGGTGGTCGGAGGGGGGCGGAG
CGGGGTGTGACAGCTGATATATGTTTCGTCCTGTTTTCCTGTTCTTTTTT
CTCGTCGTTTTTAACTATGTTTATGGGTTGAGTCTCCCAATTTGCCAGGT
TCGGCAGCAGGTTGTTCGGTGATCACCGGGGTGCTTTGGTTCACTTCGGA
GGTGTTCGTGGCCTGTTTTGTTTGGCGTCACACTACTGTTCTCTCCGGTG
TGGTGCCGTCCACCCTTTCCCTGCTGTTGCAGCCAAACCCCGTCATCGAT
GACTCTTCGTATAGCTGAGCAGTTGTATTCAAATCCAATGAAACCCATCG
AATTTAGGTGCGTCCGGGCGCAGGCTGCATGTCCACACGAAGGTAGCAGA
TCTTGACTAGTTTGTTGCAGGAGCATCTCGAGTAGTTTTGGCTGCAGGTC
CTCGCCAAATAGGGTTCAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7838:3410..9928-

>mRNA_H-paniculata_contig7838.15867.1 ID=mRNA_H-paniculata_contig7838.15867.1|Name=mRNA_H-paniculata_contig7838.15867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig7838:3410..9928- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGTACTCTGAACAAGATCATAAGCCATAAAGCTGTGTGGCATCT
CATAGATGCTAGAGGCCAGATGGCAAGTACTCTGAACAAGATCATAAGCC
ATAAAGCTGTGTGGCATCTCATAGATGCTAGAGGCCAGCTTGTCGGCCGT
CTGGCCAATCAGATAGCCCCTATCCTTCGGGGGAAGCATAAGCCTACTTT
CTGCGCCAATGAAGACTGTGGTGACTTCGTCGTGGTCATCAATGCGAAGG
ATGTGGAGTTTAGCGGAAAGAAATGGGCAGGGAAACTTGTCGGCCGTCTG
GCCAATCAGATAGCCCCTATCCTTCGGGGGAAGCATAAGCCTACTTTCTG
CGCCAATGAAGACTGTGGTGACTTCGTCGTGGTCATCAATGCGAAGGATG
TGGAGTTTAGCGGAAAGAAATGGGCAGGGAAAATTTATAAATACCATTCC
GGATTTCCTGGCGGACTGAAAGAACGACCGGCAGATTGGCAGCTCAACCG
GAAGCCCGAGGAGATTTATAAATACCATTCCGGATTTCCTGGCGGACTGA
AAGAACGACCGGCAGATTGGCAGCTCAACCGGAAGCCCGAGGAGATTCTC
CGAAAGGCGGTAATGGGCATGCTTCCGAAGAACGAGCTACGGAGGCGGAT
GACGGCCAAGCTGCGGATCTACCCCGGTCCTTGCCACCTGCATGAGGACC
AACTACCGCCGGACACGGCCGAATGTCTCCTCGTGGAGCAGAAGCGTACC
TTCAATGATGAGGTCGTGGAAGAGGTAGACGAGTTGTCTCCCGAAGAGCA
AGCCGAGTGGGACAAGTTCAAAGCTGAAGCATATGCGTGGCAGATCGAGA
AGTTTGGGAAAGTACTGGGCGGAACAGAGGAAGAGAATGAGGCTAAAGAG
AGAGAAGAGGAGGAGCTGGAAAAAAAGAAGGCCCTTGCCGCCAGGGCAAA
AGCAAAGGAGAGTAGAGGCCCGGCGAGGAAAAATCCATAGATTCTCCGAA
AGGCGGTAATGGGCATGCTTCCGAAGAACGAGCTACGGAGGCGGATGACG
GCCAAGCTGCGGATCTACCCCGGTCCTTGCCACCTGCATGAGGACCAACT
ACCGCCGGACACGGCCGAATGTCTCCTCGTGGAGCAGAAGCGTACCTTCA
ATGATGAGGTCGTGGAAGAGGTAGACGAGTTGTCTCCCGAAGAGCAAGCC
GAGTGGGACAAGTTCAAAGCTGAAGCATATGCGTGGCAGATCGAGAAGTT
TGGGAAAGTACTGGGCGGAACAGAGGAAGAGAATGAGGCTAAAGAGAGAG
AAGAGGAGGAGCTGGAAAAAAAGAAGGCCCTTGCCGCCAGGGCAAAAGCA
AAGGAGAGTAGAGGCCCGGCGAGGAAAAATCCATAG
back to top