mRNA_H-paniculata_contig783.15853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig783.15853.1
Unique NamemRNA_H-paniculata_contig783.15853.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig783.15853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig783contigH-paniculata_contig783:7689..12627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1098
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig783.15853.1prot_H-paniculata_contig783.15853.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig783 7971..12061 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.5466857-UTR-H-paniculata_contig783:7688..78741622930973.5466857-UTR-H-paniculata_contig783:7688..7874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig783 7689..7874 +
1691481534.1278048-UTR-H-paniculata_contig783:7688..78741691481534.1278048-UTR-H-paniculata_contig783:7688..7874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig783 7689..7874 +
1622930973.5651991-UTR-H-paniculata_contig783:7897..79701622930973.5651991-UTR-H-paniculata_contig783:7897..7970Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig783 7898..7970 +
1691481534.1361332-UTR-H-paniculata_contig783:7897..79701691481534.1361332-UTR-H-paniculata_contig783:7897..7970Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig783 7898..7970 +
1622930973.6167355-UTR-H-paniculata_contig783:12061..126271622930973.6167355-UTR-H-paniculata_contig783:12061..12627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig783 12062..12627 +
1691481534.160333-UTR-H-paniculata_contig783:12061..126271691481534.160333-UTR-H-paniculata_contig783:12061..12627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig783 12062..12627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.5823696-CDS-H-paniculata_contig783:7970..79761622930973.5823696-CDS-H-paniculata_contig783:7970..7976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 7971..7976 +
1691481534.1437826-CDS-H-paniculata_contig783:7970..79761691481534.1437826-CDS-H-paniculata_contig783:7970..7976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 7971..7976 +
1622930973.5969605-CDS-H-paniculata_contig783:11794..120611622930973.5969605-CDS-H-paniculata_contig783:11794..12061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 11795..12061 +
1691481534.1517265-CDS-H-paniculata_contig783:11794..120611691481534.1517265-CDS-H-paniculata_contig783:11794..12061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 11795..12061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig783.15853.1

>prot_H-paniculata_contig783.15853.1 ID=prot_H-paniculata_contig783.15853.1|Name=mRNA_H-paniculata_contig783.15853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MKIPSHYRVSSGGEQLGDFGRKYGRQKFILLSKAARSVPGALASSAVLER
DYREAGKLVSRQRGSLNPAYVKMVISSVVYTTTSRTPIQR*
back to top

mRNA from alignment at H-paniculata_contig783:7689..12627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig783.15853.1 ID=mRNA_H-paniculata_contig783.15853.1|Name=mRNA_H-paniculata_contig783.15853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4939bp|location=Sequence derived from alignment at H-paniculata_contig783:7689..12627+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGACTCACTAACGAGATCGCTCAGTGGTGGTCGTCGCGGGCTCAGGCA
TCCGCCTGCAGCTTAGGTGTAGTAGGAGCGCGGCAGGCTGATGGCGATGG
CAGCTCGAACGCTGGTGGCTCTGCAAATGCTGCTAGCTCTGCAGTCATTG
CTTCTGGCGAAGGCTCTGCACCCATCTCTGATTTTTCGCGAGCTTGTGGC
GGTGCTGCCGCCATCCCTGCCAGGGAAACAGCGACTCTCACTTCCCAGAA
CGCCCTAAATTTTGCAATGCTTAATTTCTTTCATGAAGGTACCCGGTTTT
CTCGTACCAGTAGTTCAGCGTTTTGTCCACTGTAATGTAGTTTGCACTGG
ACAAGGTGTTTCAGTAATTTTCAATCTTTTCATTCATCTTCTTCATCCTT
CTTTGCAGTGCGTCAATTTCATGCGTCATAGATGTGCATCACATACTGAC
CACGCCGCACGCGAGGCGACAATCATTGTAGCCAACTCAACGGTTGTATG
GTGCTCTGTGGCATTTTGCCTCCAAACTACGAACTTTTCACCCCCCCGAC
AAACACGAATACTTGCAAATGGTTTCACAAAAAACTTAAAGTATTCGCCT
GAGTTTCACGATGAGTGGACACAACAAATCAAGTACCCGCCCCTGCTCAT
TCGATTTATGAGTATTATTTAGAAGTCGTGAATGGTCTGGGGCACATAGA
ATTTATTACCTCATTCTGAAACTCAGGCGAATACTGTCAGTTTTATTTTT
ACACCATGTGCAAGCCTTCGCATTTGTCCGGGGGGTGGAAGTATTGGACG
ACCGACCTGGTTCGAGGAGGCAAGTCTAAAAATGGTTTGCCACCGTTTTT
CGAGGCGAAAGAGTCTTATGTATCGCCAAGACAAATCTATCGTGCGATTA
GGGGTGACGGGACGAATCGATCGGTGCCGAGTTTGCTGGGATCTGAAAGC
AGGACACTGTGAAAAACACGCTTTATCACCGTTCACTGTTGAGGTCAGGA
CATACGGCATTATTCCCTCATTAAACGGAAGTGTATGCAAACTCGTCCGG
AACTCCGTCAATTCGATTGAATCTTGGCGCACATGTTGAACGTGTCTTGA
AAACAATGCCGGCAGTGGTCCCATCGCGTAGCTCGTCGTCATTCAAAAGT
TATGATGGACAAAACATTCCATACTAGATCGATCCTACACCGTACAAACT
GGGCCGCTGAAGAAAGAAATTATGCAGTCATCTCGTCGTCCGCGGCGCAC
TTTTTGAAGTTTCGACCTGAAATGTTGACATGTGATTCGAAACGTACTCG
CAGAGACACCAACCGCGATAAGAATTTTATTTTTTCTGGCAAATGTATTA
CGGATTTTCCGCAGGGGGTAGAATTTGAATCGGTAGTAGATGGTTGAAAA
AAAAAAATATATATATATATATATATCGCGGTCGGGATGTCCGCGAGTAC
ATTGCAAATCACGTGTCAAAATTTCAGATCGAAACTTCAAAAACTGCGCC
GTGGAGGACGATTTTTCGATAGTGCATTTATGCCCAGGAAATTTGCTCAG
ATAAAATAGTAGTAAACCTACAATTTGTCACAGTGTTCGATGATCTGACA
ATGCAGCACACATCCAATCTCAGCTTCAACCAACACATCCCCTTGGCGTT
GTCCAGCACAATCGTAGAGACTGATGCCCCCTGCCATTGCTGACCTACTG
GTACGCTCGTAGCCATGTCACAGGACTTGGGCGTGGGGTGTCCCTGATCT
CCGCACTTTTATGCTGCATGATTTTAATTGCGCCGCAAAAATAAATCGGC
TTCAACACCAACATCCTTACACGCTGGTTGGGCAGCTAACCTCAAATTTG
TACAACAATTTCAATGGGCTAGGCACGTGGCTCTGCACATGCGCGTTGAT
TGGTCGATTGAAACAACGCTTTCTTTTTGAGATGCATCGCAGTAGTTGAG
AAGGTATGATCATCCGAAACAATCTAGGTTTCTTGGTCGGCCCAGCTTGT
AGCGCATGTTGGCGATTTTCGGAACAATTAGCGCGTTTATGCTCTACGGC
ACCTGGGTATTTTTAGTCCTTTGCAAAACTTCATGAACGGATTCCTGACT
CATCCGTCCAAGTCCCCTAGATTGGGTTGTTTGAATTTTCGGTGTAATTC
ACCAGTTACGGAGGGTCTCAGAACCCAAAAGCGCACGCGGAGCCCGGAAT
CACGTTAAAATGAACCGAAGTCGGGAAAAAAATAGAGTCGAGGACTTTGA
CGAGTGAGTCAGGAATCCAGTTGCAAATTTTCCGGGAAGAACTCGAAAAA
CCCAGTCTGGGATACTCGTTGCCATTGGGATTCTATGGTCAAAATATCCA
TCTACAATGAAACCATCTCTTATGGGACCAGTTCAAAATCAAAATTGAGC
CCAATTTTGAACGAAAAAATAACGAAAATGGCAGCCTCAGTTTTGGCTGG
GGCGTTAAAATGAGCACCCATTTTGAACGCCCTGAGCCCCGTTCAAAATT
GAAAAAGTGCCACAGCTACAGGAAATACCGTTGTCTGCCGCACGTGAGCT
GTAGCACACACACACGCACACACACACACACGTCGCGGCCGATCAAGCGC
TTCAACACCATGGAGTAGTACAGTAGACAGTCTGTTTGAAAGTTATCGTC
ATGGAGCAGAGGAGTACAATCAAAATACGTGGTATGGTACAAACATTACA
GACAGTACAGTAGTGTGTCGAAAGCTGTCGTCATGGGGCAGTACAGCACA
ACGTAAAACGCTACAGTTCACAATTCACATATGCACACATCCACACGACG
CGGCCAAACAAGGGTCTCAACTTCATGGGGTACAGTGTGTTGTGAAGGAT
GTCGTTATGGAGGAGTACAGTACAGTACAGTACAGTACAGTACAGTACAG
TACAGTACAGTACAGTACAGTACAGTACAGTGTTCTAAAAGCTGTCGCCA
TCGAGCAGTACAACGCAATAAAGTACACACATGCGCACATACACGCCTTC
GTTTGCTGGTTCTACGTGCGTCTGCTGATGTACAAACCTCTCGATTTTCA
ATTTGCGACGGTAAGACATGTTTTTGTGTGCAATCCAAAATTGCAGAGGG
GGGAAATATCTATCTTGAAGTTGTTCAAAATTGGGCTCAATTTTTATTTT
CCATTTCCTCCCATGAGACATGGTTTAAATCCTGCATATTCCTCGAATTT
GGAATAATTACGACGCAACAAATCCTCTTCCAGATCGTTTTCATCGAGTT
TTCCTACGACACTTCGGAAGGGGATTCCTGGATCGTCCGTCCAAGTCCCA
AGACCGCGTCATTTCAATTTTCGCTTTAGTTCACCAATTATAGGGGGGAT
CCTGGAAACTGAAAGCGCTGGCGGACCTCGGAAACCAGAAAAAAAACGAA
GATCGAAATGACCCGGTCTTGGAGACAATGGCAGGCGGGTTAGGAACCTG
TTTGCAAAGCTTCGTTAAAAACTCGATGAAGACGACTCGAAAGAGCAACT
GCAAAATATTCTGCCGTCTCCCCTGAACCACCCTGCGAGTCGTTGGACCG
GGCTCTCAAAATAAACGAGTCGCCTCCGCGTGGAACTCCCCGTACACACT
GTTTACTACAGGAACGTGAGTTTTATGGCTGTATTCTATATCTTGCGCTT
GGGCAAAGCTTGGGCGCCGAAATACTGCTCCAAAAAGTAGACACCATACC
GCATGATACCAAGAAGACAAAATACCATATCGTACTGTACCGTGCTACTG
ATATGCTGAAGACCATTCACCGACCCACCCCACACTGAGGAAAAAAAATA
CTGTACCGTTTATTCATTTTTGAAATACCGTTGCCGAGAACACCCTACTA
TTTTTTTCGTGATTGAACTATCGAAAGTCAGGTGCAATACAGGACTGTGC
AGCTTCTGCACCTTCCTGGCTCATTTATGGAGTAGCCTTGTTCGAGACGC
GAGCTTCAGTCGTCGTCGGCTGCTTGACATCCTGTTTCCCAAACAGGGTA
TGACACAGCAGGCAAAATATAACAGCGGATTTCCTGACCTTTTCATGGAT
TTGTGATGCACTGTTGGACTTAGCACCCATAGTTTGTTGTCTTCTCCGTT
GTACAGATTCCTTCTCATTATCGGGTGTCATCGGGCGGGGAGCAGCTGGG
CGACTTCGGGCGTAAGTACGGAAGGCAGAAGTTCATACTGCTGAGCAAGG
CGGCGCGCAGCGTGCCAGGTGCGCTAGCCTCGTCTGCAGTTTTGGAGCGC
GACTACAGAGAAGCTGGGAAGCTCGTCAGCCGACAACGTGGATCCCTCAA
TCCAGCCTACGTCAAGATGGTGATTTCGTCCGTGGTGTATACGACTACAT
CCCGGACGCCAATCCAAAGATGACTACGGATGAGGTCGATGAAGTTATCC
CGTTTGGGTTGAGGGATCCCACAGTACGAACAGAGCTTGCGGGCCTTTTT
GTAGAACCATCGACTTCGACAGACGAAGACAGCATTGGCCTTGTTATTGG
AAGCAGTGGTGACAATCACGCGTTTATTATGGAAGAAGTTGTAGGAGGGA
CAAATACTGTAGAAGAGCCAGGTTCACTAGACAAGTTACTTTCATCATGT
TGTGACGATGAGTGACTAGTTCACGGGGAATAGTTGTCACTAGCACTGAT
TGTGAATTCTTCAAGTGCGGGCAAATATGTGCGCAGCTATCGCTCTTCTT
TGGCTTGTACGAAATCGATGATCATGTTGTGGTAAGAGAGCAGTGTAGGA
CACAGCATAAAGTTCCCTCACAAGAGATGAAAGATTCCGTTGGGCAAGGA
ACAAATCACGACGAAGTTATTTTATGGTTAAAGACGAAGGATTGAGGAGT
CATGCGAGAGAAGTAGCGACGAACGTCAAATAGTTTTGCGAAGGTCACGA
AACAATTGACATGAACGATGAAGGAGATAAGGAACATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig783:7689..12627+

>mRNA_H-paniculata_contig783.15853.1 ID=mRNA_H-paniculata_contig783.15853.1|Name=mRNA_H-paniculata_contig783.15853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig783:7689..12627+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGATGAAGATTCCTTCTCATTATCGGGTGTCATCGGGCGGGGAGCA
GCTGGGCGACTTCGGGCGTAAGTACGGAAGGCAGAAGTTCATACTGCTGA
GCAAGGCGGCGCGCAGCGTGCCAGGTGCGCTAGCCTCGTCTGCAGTTTTG
GAGCGCGACTACAGAGAAGCTGGGAAGCTCGTCAGCCGACAACGTGGATC
CCTCAATCCAGCCTACGTCAAGATGGTGATTTCGTCCGTGGTGTATACGA
CTACATCCCGGACGCCAATCCAAAGATGAATTCCTTCTCATTATCGGGTG
TCATCGGGCGGGGAGCAGCTGGGCGACTTCGGGCGTAAGTACGGAAGGCA
GAAGTTCATACTGCTGAGCAAGGCGGCGCGCAGCGTGCCAGGTGCGCTAG
CCTCGTCTGCAGTTTTGGAGCGCGACTACAGAGAAGCTGGGAAGCTCGTC
AGCCGACAACGTGGATCCCTCAATCCAGCCTACGTCAAGATGGTGATTTC
GTCCGTGGTGTATACGACTACATCCCGGACGCCAATCCAAAGATGA
back to top