mRNA_H-paniculata_contig7825.15849.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7825.15849.1
Unique NamemRNA_H-paniculata_contig7825.15849.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Match: D7FX19_ECTSI (Er lumen protein retaining receptor 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX19_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 8.230e-50
Identity = 82/121 (67.77%), Postives = 99/121 (81.82%), Query Frame = 1
Query:   22 QTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSRLCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRDVDSFGALHVPSEFGIVYIVVPCLLFAVV 384
             T AS TRGF FAVL+  M+ KKHARGVS+KSLQLY +VF SRL SV+QH+GYLPYD+SGD VYH AE  +L  +  CVVL+ST+ K+TYQ+DVDSFGALHVP+E+G +YI VPCLL A+V
Sbjct:   52 MTFASFTRGFGFAVLLGLMLAKKHARGVSMKSLQLYAVVFASRLVSVLQHEGYLPYDRSGDFVYHGAEIASLALAVGCVVLISTKFKSTYQQDVDSFGALHVPTEWGTLYIFVPCLLLAIV 172          
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Match: A0A836CR66_9STRA (Er lumen protein retaining receptor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR66_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.780e-39
Identity = 61/120 (50.83%), Postives = 91/120 (75.83%), Query Frame = 1
Query:   22 QTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSRLCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRDVDSFGALHVPSEFGIVYIVVPCLLFAV 381
             T A+LTR F FA+L+  M +K+HA+GVS K+L++Y LVFF RL S+++H+GYLPYDKSGD +YH AE  ++  + AC+  M T+ + +YQRD D+FG++ +PS  G +Y++VPC++ AV
Sbjct:   53 MTYAALTRTFGFALLLVRMFIKQHAKGVSRKTLEMYVLVFFPRLVSILRHEGYLPYDKSGDFIYHAAEMLSMALAAACLFYMHTRFERSYQRDYDTFGSVGLPSHLGTLYMIVPCVVLAV 172          
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Match: A0A835ZJ22_9STRA (Er lumen protein retaining receptor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ22_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.160e-37
Identity = 61/120 (50.83%), Postives = 86/120 (71.67%), Query Frame = 1
Query:   22 QTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSRLCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRDVDSFGALHVPSEFGIVYIVVPCLLFAV 381
             T A+L R F FA+L+  M +KKHA+GVS K+L+LY  VF  RL S+ +H+GYLPYDKSGD +YH AE  +L  +  C+V M T    +YQRD D+FG +++P+ FG +Y++VPC++ AV
Sbjct:   53 MTYAALARTFGFALLLVRMFIKKHAKGVSRKTLELYVFVFLPRLVSIFRHEGYLPYDKSGDFIYHAAEGLSLVGALLCLVFMHTSFARSYQRDYDTFGNIYIPARFGTLYMIVPCVVMAV 172          
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Match: A0A3R6Y0Z4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Y0Z4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.490e-32
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   22 QTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSRLCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRDVDSFGALHVPSEFGIVYIVVPCLLFAVVN 387
             T  S  R F F +L+   + +K   G+SLK+LQLY  VFF RLCS+ ++ GYLPYD+SGD +Y   EF  LG + A + L++ Q + +Y    D+FG LHVPSE+GIVYI+VP +L  +V+
Sbjct:   62 MTFGSFVRAFGFGILIFKSLTQKSVSGLSLKTLQLYGFVFFFRLCSITRYQGYLPYDRSGDWLYTFIEFVGLGLTLAVIFLVTVQFRGSYDFKFDTFGHLHVPSEYGIVYILVPSILLGMVS 183          
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Match: A0A397ATA9_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ATA9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.000e-31
Identity = 57/123 (46.34%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   22 QTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSRLCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRDVDSFGALHVPSEFGIVYIVVPCLLFAVVND 390
             T  +  R F F +L+   + +K   G+SLK+LQLY  VF  RLCS+ ++ GYLPYD+SGD +Y   EF  LG + A + L++ Q + +Y    D+FG LHVPSEFGIVYI+VP +L  +V +
Sbjct:   47 MTFGAFVRAFGFGILIFKSLTQKSVSGLSLKTLQLYGFVFLFRLCSITRYQGYLPYDRSGDWLYTFIEFVGLGLTLAVIFLVTVQFRGSYDFKFDTFGHLHVPSEFGIVYILVPSILLGMVKN 169          
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Match: A0A485LSS7_9STRA (Aste57867_24973 protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485LSS7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.970e-30
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   22 QTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSRLCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRDVDSFGALHVPSEFGIVYIVVPCLL 372
             T  +  R F FA+L+   + ++   G+SLK+LQLY  VFF RLCS+ ++ GYLPYD+SGD +Y   EF  L  + A + L++ Q + +Y    D+FG LHVPSE+GIVYI+ PC++
Sbjct:   45 MTFGAFVRAFGFAILIFKSLTQQSVAGLSLKTLQLYAFVFFFRLCSITRYQGYLPYDRSGDWLYTFIEFLGLALTGAVIFLVTVQFRGSYDFKFDTFGHLHVPSEYGIVYILAPCII 161          
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Match: W4H089_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H089_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.910e-30
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   22 QTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSRLCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRDVDSFGALHVPSEFGIVYIVVPCLL 372
             T  +  R F F +L+   + +K   G+SLK+LQLY  VF  RLCS+ ++ GYLPYD+SGD +Y   EF  LG + A + L++ Q + +Y    D+FG LHVPSEFGIVYI+VP +L
Sbjct:   47 MTFGAFVRAFGFGILIFKSLTQKSVSGLSLKTLQLYGFVFLFRLCSITRYQGYLPYDRSGDWLYTFIEFVGLGLTLAVIFLVTVQFRGSYDFKFDTFGHLHVPSEFGIVYILVPSIL 163          
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Match: A0A7S2H0H3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H0H3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.320e-29
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = 1
Query:   22 QTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSRLCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRDVDSFGALHVPSEFGIVYIVVPCLLFA 378
             T  ++ R F F +L       K A GVS+K+LQLY++VFF RL S+++H+GYLPYDKSGD +YHV E  AL F+++ +       K+TYQ D D FG ++VPS  G VY+ VP LL A
Sbjct:  123 MTYGAMARMFGFGILNVKTFTSKRATGVSIKTLQLYSMVFFFRLTSIIRHEGYLPYDKSGDWLYHVIEIMALIFTSSALYGCMFPFKSTYQADADKFGEINVPSGLGAVYLAVPVLLVA 241          
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Match: A0A6V2QBA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QBA8_HETAK)

HSP 1 Score: 116 bits (291), Expect = 2.310e-29
Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 1
Query:   22 QTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSRLCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRDVDSFGALHVPSEFGIVYIVVPCLLFAVV 384
             T AS+TR FAFAVL   M+  K ++GVSLK+L+LY L++  RL ++ +H+GYLP+D+SGD  YH+ EF AL        L+       Y++  D FG LHVP E+G VY++VPC L A+V
Sbjct:   44 MTYASMTRFFAFAVLAFKMIWTKSSQGVSLKTLELYFLMYLFRLAAIARHEGYLPFDRSGDWFYHMVEFLALVLVGLSGFLIMGPFAARYEKTFDCFGNLHVPPEYGAVYLIVPCFLLALV 164          
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Match: B8C3M7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3M7_THAPS)

HSP 1 Score: 115 bits (289), Expect = 3.950e-29
Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   22 QTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSRLCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRDVDSFGALHVPSEFGIVYIVVPCLLFAV 381
             T  +++R F F +L     + K A GVS+K+LQLY LVFF RL S+++H+GYLPYDKSGD +YHV E  AL F+ + +       K TYQ D D FG ++VP   G VY+ VP +L AV
Sbjct:   36 MTYGAMSRMFGFGILNVKTFMSKRATGVSVKTLQLYCLVFFFRLTSIIRHEGYLPYDKSGDWLYHVIEILALVFTASALWGCMVPFKQTYQADQDKFGEMNVPPGAGAVYLAVPVMLLAV 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7825.15849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX19_ECTSI8.230e-5067.77Er lumen protein retaining receptor 1 n=2 Tax=Ecto... [more]
A0A836CR66_9STRA5.780e-3950.83Er lumen protein retaining receptor 1 n=1 Tax=Trib... [more]
A0A835ZJ22_9STRA7.160e-3750.83Er lumen protein retaining receptor 1 n=1 Tax=Trib... [more]
A0A3R6Y0Z4_9STRA1.490e-3247.54Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A397ATA9_9STRA1.000e-3146.34Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A485LSS7_9STRA2.970e-3046.15Aste57867_24973 protein n=5 Tax=Aphanomyces TaxID=... [more]
W4H089_9STRA4.910e-3047.86Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2H0H3_9STRA1.320e-2948.74Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6V2QBA8_HETAK2.310e-2947.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8C3M7_THAPS3.950e-2948.33Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7825contigH-paniculata_contig7825:3294..4294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue1.4e-39
Seed eggNOG ortholog2880.D7FX19
KEGG koko:K10949
KEGG Pathwayko05110,map05110
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
EggNOG free text desc.ER retention sequence binding
EggNOG OGsCOG5196@1,KOG3106@2759
Ec32 ortholog descriptioner lumen protein retaining receptor 1
Ec32 orthologEc-10_003970.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size390
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.0044427-CDS-H-paniculata_contig7825:3293..34831622930973.0044427-CDS-H-paniculata_contig7825:3293..3483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7825 3294..3483 -
1691481533.8484929-CDS-H-paniculata_contig7825:3293..34831691481533.8484929-CDS-H-paniculata_contig7825:3293..3483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7825 3294..3483 -
1622930973.018751-CDS-H-paniculata_contig7825:4094..42941622930973.018751-CDS-H-paniculata_contig7825:4094..4294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7825 4095..4294 -
1691481533.8612976-CDS-H-paniculata_contig7825:4094..42941691481533.8612976-CDS-H-paniculata_contig7825:4094..4294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7825 4095..4294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7825.15849.1prot_H-paniculata_contig7825.15849.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7825 3294..4294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7825.15849.1

>prot_H-paniculata_contig7825.15849.1 ID=prot_H-paniculata_contig7825.15849.1|Name=mRNA_H-paniculata_contig7825.15849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MLGFLIGQTCASLTRGFAFAVLMANMMVKKHARGVSLKSLQLYTLVFFSR
LCSVMQHDGYLPYDKSGDHVYHVAEFFALGFSTACVVLMSTQLKTTYQRD
VDSFGALHVPSEFGIVYIVVPCLLFAVVND
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mRNA from alignment at H-paniculata_contig7825:3294..4294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7825.15849.1 ID=mRNA_H-paniculata_contig7825.15849.1|Name=mRNA_H-paniculata_contig7825.15849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1001bp|location=Sequence derived from alignment at H-paniculata_contig7825:3294..4294- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGGCTTTTTGATTGGTCAGACATGCGCATCGTTGACGCGGGGGTT TGCTTTCGCGGTATTGATGGCGAACATGATGGTGAAGAAGCACGCCAGGG GGGTTTCCTTGAAGAGCCTCCAGCTGTACACCTTGGTGTTTTTCTCCCGA CTCTGCTCGGTGATGCAACACGACGGTTACCTACCCTATGACAAGAGTGG GTGAGTTGGATAATGACGATATACCAGTACCGGCGGTATGAACTTTCTTT ATCATGTTCCAGAGTCGTTTTTTTGTGAAGAAACATATTTTTGAGGTGAC ATGTTGGTATTGGGGACGCTATAACTTGCAAACTCCAATACGCCGGCTTT TTTGTATATCATTTTGATGAGAAGTGTGTACAGCTGAAATTTGCGGTCAG CTGCACAAGCTCAATATGGGTATGATGGAGTTTATTTCATGATCGTCATA GTTCTAGTGACTGGCAATAGAGTTGAATTTCGAATCAGGCTCCTGGTTGG AAAATCGGGTATGTTATTCTGTCATTCGTTCATTTGAATGCCTTTTTTTT GTTGACGTACGGTACACACGTGATTGATACAGGGATAACTCTCTTGTGGA GGTCATTGATGAGGCCTACGGTTTGCTCCTCTCCGCCTCCATCTTATTGT TTTTCTTTTTATTCTTGTTGCTTGTAAGAAGTGAGATCTCTGTTATGATG AATGGGACTTGATTTCAGTAATAGTCTGATGTAATGCAAATAGTCCTCGT CATCTCCAGTCCCCATTCTGTTCCTCTCTGTGTACCCTCTTTTCGCTCTT CTTTTTTACAGCGATCACGTCTACCATGTGGCTGAGTTTTTCGCGTTGGG GTTTTCGACCGCCTGCGTAGTCCTCATGTCTACTCAGCTGAAGACTACGT ACCAGCGCGACGTGGATTCGTTCGGAGCGCTGCACGTACCGTCCGAGTTC GGGATCGTGTATATCGTGGTCCCGTGTCTCTTATTTGCCGTGGTGAATGA T
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Coding sequence (CDS) from alignment at H-paniculata_contig7825:3294..4294-

>mRNA_H-paniculata_contig7825.15849.1 ID=mRNA_H-paniculata_contig7825.15849.1|Name=mRNA_H-paniculata_contig7825.15849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig7825:3294..4294- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGGCTTTTTGATTGGTCAGACATGCGCATCGTTGACGCGGGGGTT
TGCTTTCGCGGTATTGATGGCGAACATGATGGTGAAGAAGCACGCCAGGG
GGGTTTCCTTGAAGAGCCTCCAGCTGTACACCTTGGTGTTTTTCTCCCGA
CTCTGCTCGGTGATGCAACACGACGGTTACCTACCCTATGACAAGAGTGG
ATGTTGGGCTTTTTGATTGGTCAGACATGCGCATCGTTGACGCGGGGGTT
TGCTTTCGCGGTATTGATGGCGAACATGATGGTGAAGAAGCACGCCAGGG
GGGTTTCCTTGAAGAGCCTCCAGCTGTACACCTTGGTGTTTTTCTCCCGA
CTCTGCTCGGTGATGCAACACGACGGTTACCTACCCTATGACAAGAGTGG
CGATCACGTCTACCATGTGGCTGAGTTTTTCGCGTTGGGGTTTTCGACCG
CCTGCGTAGTCCTCATGTCTACTCAGCTGAAGACTACGTACCAGCGCGAC
GTGGATTCGTTCGGAGCGCTGCACGTACCGTCCGAGTTCGGGATCGTGTA
TATCGTGGTCCCGTGTCTCTTATTTGCCGTGGTGAATGATCGATCACGTC
TACCATGTGGCTGAGTTTTTCGCGTTGGGGTTTTCGACCGCCTGCGTAGT
CCTCATGTCTACTCAGCTGAAGACTACGTACCAGCGCGACGTGGATTCGT
TCGGAGCGCTGCACGTACCGTCCGAGTTCGGGATCGTGTATATCGTGGTC
CCGTGTCTCTTATTTGCCGTGGTGAATGAT
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