mRNA_H-paniculata_contig7821.15847.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Match: D7G0C7_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C7_ECTSI) HSP 1 Score: 268 bits (684), Expect = 1.290e-77 Identity = 157/377 (41.64%), Postives = 208/377 (55.17%), Query Frame = 2
Query: 2 AWIRLSMNLEHLGD-GDACLESLRSACEDGFVSGGERVEVVQRLAAKHEQYGNPDDTPPLSPFPEASEEQIVSTLRVAKRGNKRSSAGGRVILYEDSSGGTSSSVSIGGSGGQEAFLAQGAQDKDSITNGSNXXXXXXXTRGMSVEEVVLKEAREDDSGAWAGLHCETDLVMTLMMLLLWEEVFDPTVEAAGAHCMTNQPLDLYDVHFWKRRRGLPARWSDIAAATDEHLWMDVGQRFDRYKGVLCARCNLASFSKQQVREVSLAFGGRRLSSVLRVLSQDLSHLNYGFPDLVLWRPKLQ------RRRGAHPLGQSGQPASWRGK-EFGLGWEGVGQGWEVKVVEVKSVTDQLSMVQRAWLSALRDAGVPATVCRV 1108
A+ RL++NL+HL + G LE++ AC+D V GG+RVE+ +R H+++G+ DTP EE +V + K GN+RS +GGR + + DK + ++VEEV+L+E SG W GLHCE+ L M L +LLLWEEVFD V AA H + + PLD+ D F RR GL R I+ ++DE LW+DVGQR+DR+ GV+ C+ F KQQV E+ AFGGRRLS +L + ++ L +GFPD+VLWRPK R G G+ + W K FGLGWEG GQGWEV+VVEVKS D S Q+AWL L +A VPA V RV
Sbjct: 567 AYTRLAINLKHLKNPGRRQLETVMEACDDDGVQGGDRVELRERYDFLHKKFGDSQDTPLKERRFRYEEEVLVVNMETQKEGNQRSKSGGRKLYF----------------------------DKPDVGE-----PRWGERNSLNVEEVLLRERYR--SGGWLGLHCESSLNMFLTVLLLWEEVFDERVHAALPHVIMSSPLDMQDKFFCSRREGLSRRLRTISRSSDEQLWLDVGQRYDRFSGVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSTTTTTITQLRFGFPDVVLWRPKSDKGVAESRSGGGSGTGEE-EGLDWSAKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRV 907
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Match: D7G0C5_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C5_ECTSI) HSP 1 Score: 235 bits (599), Expect = 3.020e-65 Identity = 152/393 (38.68%), Postives = 213/393 (54.20%), Query Frame = 2
Query: 2 AWIRLSMNLE-HLG-DGDACLESLRSACEDGFVSGGERVEVVQRLAAKHEQYGNPDDTPPL-----SPFPEASEEQIVSTLRVAKRGNKRSSAGGRVILYEDSSGGTSSSVSIGGSGGQEAFLAQGAQDKDSITNGSNXXXXXXXTRGMSVEEVVLKEAREDDSGAWAGLHCETDLVMTLMMLLLWEEVFDPTVEAAGAHCMTNQPLDLYDVHFWKRRRGLPARWSDIAAATDEHLWMDVGQRFDRYKGVLCARCNLASFSKQQVREVSLAFGGRRLSSVLRVLSQDLSHLNYGFPDLVLWRPK-LQRRRGAHPLGQSGQPASWRGK-EFGLGWEGVGQGWEVKVVEVKSVTDQLSMVQRAWLSALRDAGVPATVCRVA---HLAPPKRSRKK 1144
A+ RL++NL+ HL + L+ +++AC+D V GG+RV++ +R H++ G+ T L SP + E I + K+G++ GT +G GG++ + A + R +VEEVV++E +G W GLH E+ L+M ++MLLLWEEVFD VEAA HC+ PLD D F RR GLP R + I D L+ DVGQR+DR +GV C+ F KQQ+ E+ +AFGG+RLS +L+ L+ +L+ ++ GFPD+VL RPK G G W+ + FGLGW+G G GWEV+VVEVKS D +S Q+AWL+ L D GVPA V RV P KRSR +
Sbjct: 646 AYTRLAINLKTHLKRPREEQLDVVKAACDDDCVRGGDRVDLWERYQGLHKKCGD-RQTASLRGRQRSPLWDPKVEDIHPPVETQKQGSQ----------------GT-----LGEKGGRKLYYYNDAAPGE---------RRWSEARSHNVEEVVIRERYS--AGGWLGLHGESKLIMFILMLLLWEEVFDSGVEAAVPHCIMISPLDTSDKFFTTRREGLPDRLATIGQYADRQLFSDVGQRYDRLRGVRSGWCDWNVFPKQQIMEICVAFGGKRLSDLLKTLTNNLADMDKGFPDVVLRRPKGADFGAGGSSSGGGRDERDWKARTHFGLGWQGHGHGWEVEVVEVKSKGDTISKEQKAWLAELEDIGVPAMVSRVVAENEAVPKKRSRSR 1005
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE) HSP 1 Score: 162 bits (410), Expect = 8.730e-40 Identity = 124/330 (37.58%), Postives = 149/330 (45.15%), Query Frame = 2
Query: 152 GNPDDTPPLSPFPEASEEQIVSTLRVAKRGNKRSSAGGRVILYEDSSGGTSSSVSIGGSGGQEAFLAQGAQDKDSITNGSNXXXXXXXTRGMSVEEVVLKEAREDDSGAWAGLHCETDLVMTLMMLLLWEEVFDPTVEAAGAHCMT--NQPLDLYDVHFWKRRRGLPARWSDIAAATDEHLWMDVGQRFDRYKGVLCARCNLASFSKQQV---REVSLAFGGRRLSSVLRVLSQDLSHLNYGFPDLVLWRPKLQR-----RRGAHPLGQSGQPASWRGK-EFGLGWEGVGQGWEVKVVEVKSVTDQLSMVQRAWLSALRDAGVPATVCRV 1108
G+ DTP EE +V + K GN+RS GGR + + DK + ++VEEV+L+E SG W GLHCE+ L M LM+LLLWEEVFD V AA H +T N D F RR GL R I+ ++DE LW+DVGQR+DR F KQQV R R S R +GFPD+VLWRPK + R G + W K FGLGWEG GQGWEV VEVKS D S Q+AWL L +A VPA V RV
Sbjct: 734 GDNQDTPLKERRFRYEEEVLVVNMDTQKEGNQRSKNGGRKLYF----------------------------DKPDVGE-----PRWGERNSLNVEEVLLRERYR--SGGWLGLHCESSLNMFLMVLLLWEEVFDDRVHAALPHVITARNMKHAGKDKFFCSRREGLSIRLRTISRSSDEQLWLDVGQRYDR-------------FPKQQVWCDRAWRYYLDNDRASKRRR----------FGFPDVVLWRPKSDKGAAESRSGGGSGSGDEKGLHWGSKTHFGLGWEGYGQGWEV--VEVKSKDDTTSHAQKAWLMELENARVPAIVTRV 1003
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Match: A0A7S0GUH1_MICPS (Fanconi-associated nuclease n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GUH1_MICPS) HSP 1 Score: 100 bits (249), Expect = 5.440e-19 Identity = 76/230 (33.04%), Postives = 107/230 (46.52%), Query Frame = 2
Query: 425 MSVEEVVLKEAREDDSGAWAGLHCETDLVMTLMMLLLWEEVFDPTVEAAGAHCMTNQPLDLYDVHFWK-RRRGLPARWSDIAAATDEHLWMDVGQRFDRYKGVLCARCNLASFSKQQVREVSLAFGGRRLSSVLRVLSQDLSHLNYGFPDLVLWRPKLQRRRGAHPLGQSGQPASWRGKEFGLGWEGVGQGWEVKVVEVKSVTDQLSMVQRAWLSALRDAGVPATVCRVA 1111
+SVEE+ + E+D+G+W G+H E+ MTL LL + + P V + PLDL F + RR + S+I + DV +R Y G + S ++ ++ L GG L+ V+ ++++D S G PDL+LWR S +P +VK VEVKS DQLS QRAWL ALRDAGV VCRV+
Sbjct: 716 VSVEELAIMHYAEEDAGSWRGVHSESRAWMTLFGLLFADVILSP-VPGVFHGPFQSAPLDLGTDSFVEVRRDDITKILSEIRRGEGPKIVRDVWRR---YYGTAIYGVSWVLLSLDELCDIILGLGGAALAEVMGLIAEDTSGWTGGAPDLLLWRHS------------SCEP-------------------KVKAVEVKSKNDQLSDQQRAWLLALRDAGVTVAVCRVS 910
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Match: A0A087SS49_AUXPR (Fanconi-associated nuclease n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SS49_AUXPR) HSP 1 Score: 94.7 bits (234), Expect = 3.890e-17 Identity = 92/331 (27.79%), Postives = 134/331 (40.48%), Query Frame = 2
Query: 5 WIRLSMNLEHLGDGDACLESLRSACEDGFVSGGERVEV---VQRLAAKHEQYGNPDDTPPLSPFPEASEEQIVSTLRVAKRGNKRSSAGGRVILYEDSSGGTSSSVSIGGSGGQEAFLAQGAQDKDSITNGSNXXXXXXXTRGMSVEEVVLKEAREDDSGAWAGLHCETDLVMTLMMLLLWEEVFDPTVEAAGAHCMTNQPLDLYDVHFWKRRRGLPAR-WSDIAAATDEHLWMDVGQRFDRYKGVLCARCNLASFSKQQVREVSLAFGGRRLSSVLRVLSQDLSHLNYGFPDLVLWRP-----KL------------QRRRGAHPLGQSG 934
WIRLS+NLEHLG LE + D ++S G+R+ + V RLA ++ P ++P P E +IV + G K F+ + +VE++ L+ D++G W G HCE + T LLLWE +F P + ++ PLDL F+ R+ L R +IAA E V +D + G LCA + +++ V+ GGR L+ V R+L++D S G PDL+LW P KL Q+R AH L Q G
Sbjct: 481 WIRLSINLEHLGRVGEALEMAEAGLADDWLSHGDRLALQRRVLRLAKPPRRWKRPAWAGSVAPEPR--EVRIVQRPMASIVGFK------------------------------SRFMGLSGEP-------------------CTVEQLALQHYARDEAGGWTGCHCEGGIWSTFFSLLLWEALFAPVPDVFRTPFQSS-PLDLRTESFYIGRQDLIERILGEIAAGGVEERLRAV---WDAHCGELCAGIRWDRWPLEELLTVAACVGGRGLAVVCRLLAEDHSGWAGGMPDLLLWNPARLKAKLVEVKGPRDRLSEQQRAWAHALTQGG 756
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Match: A0A8J4BQL5_9CHLO (Fanconi-associated nuclease n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BQL5_9CHLO) HSP 1 Score: 87.0 bits (214), Expect = 1.320e-14 Identity = 77/300 (25.67%), Postives = 126/300 (42.00%), Query Frame = 2
Query: 5 WIRLSMNLEHLGDGDACLESLRSACEDGFVSGGERVEVVQRLAAKHEQYGNPDDT---PPLSPFPEASEEQIVSTLRVAKRGNKRSSAGGRVILYEDSSGGTSSSVSIGGSGGQEAFLAQGAQDKDSITNGSNXXXXXXXTRGMSVEEVVLKEAREDDSGAWAGLHCETDLVMTLMMLLLWEEVFDPTVEAAGAHCMTNQPLDL-YDVHFWKRRRGLPARWSDIAAATDEHLWMDVGQRFDRYKGVLCARCNLASFSKQQVREVSLAFGGRRLSSVLRVLSQDLSHLNYGFPDLVLWRPK 892
W+R+S++L+HLG + L+ +A D +V G+R+ + +R+ + G P PP + A ++V + + K G +G + FL A++ DS ++ +R SVEE+ L G W G+H E + TL +L W+ +F E + T PLDL D RR + AR +A+ L V + G C N ++ + + +++ GG LS V R+L +D G PDL+LWRP+
Sbjct: 519 WMRMSVDLQHLGREEEALQVAEAALTDPWVRHGDRLALQRRVL----RLGKPPRRWRRPPWAASALAEPREVVVSATMMK----------------------------GAAGFKSCFLVPSARNGDSGGGSADGS-----SRVASVEELALLHYGSAGGGGWRGVHSEGGVWTTLWAILFWDVLFMDVPEVFRSPFQT-APLDLDTDAFLPTRREAVDARLQLVASGAAPELLRAV---WSCRVGTWCRGVNWERWTLEDLLQIAGCVGGLGLSVVCRLLCEDAGGWRGGMPDLLLWRPE 777
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Match: C1MMR4_MICPC (Fanconi-associated nuclease n=3 Tax=Micromonas pusilla TaxID=38833 RepID=C1MMR4_MICPC) HSP 1 Score: 86.7 bits (213), Expect = 1.880e-14 Identity = 74/232 (31.90%), Postives = 97/232 (41.81%), Query Frame = 2
Query: 425 MSVEEVVLKEAREDDSGAWAGLHCETDLVMTLMMLLLWEEVFDPTVEAAGAHCMTNQPLDLYDVHFWKRRRGLPARWSDIAAATDE----HLWMDVGQRFDRYKGVLCARCNLASFSKQQVREVSLAFGGRRLSSVLRVLSQDLSHLNYGFPDLVLWRPKLQRRRGAHPLGQSGQPASWRGKEFGLGWEGVGQGWEVKVVEVKSVTDQLSMVQRAWLSALRDAGVPATVCRV 1108
+SVE + L +G W G HCET L TL LL + +F V + PLD F PAR + +AAA + A + S + +V+ G L+S++ +L++D G PDL+LWR RRG+ G G EVK VEVKS D+LS QRAWL ALRDAGV VC+V
Sbjct: 761 VSVEALALAHYSVAANGGWRGAHCETSLWTTLFGLLFADVIFCGGVPGTFRGPFQSAPLDFDTDAF------APARATRLAAALRDIRGGAARXXXXXXXXXXXXAAIAGVSWTLMSLDDLCDVAEGIGRDALASMMGLLAEDRRGWVGGAPDLILWR-----RRGS----------------------GAGARAEVKCVEVKSANDRLSDQQRAWLLALRDAGVDVVVCKV 959
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Match: A0A2K3CTH8_CHLRE (Fanconi-associated nuclease n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CTH8_CHLRE) HSP 1 Score: 85.5 bits (210), Expect = 5.250e-14 Identity = 71/235 (30.21%), Postives = 97/235 (41.28%), Query Frame = 2
Query: 425 MSVEEVVLKEAREDDSGAWAGLHCETDLVMTLMMLLLWEEVFDPTVEAAGAHCMTNQPLDL-YDVHFWKRRRGLPARWSDIAAATDEHLWMDVGQRFDRYKGVLCARCNLASFSKQQVREVSLAFGGRRLSSVLRVLSQDLSHLNYGFPDLVLWRPKLQRRRGAHPLGQSGQPASWRGKEFGLGWEGVGQGWEVKVVEVKSVTDQLSMVQRAWLSALRDAGVPATVCRVAHLAPP 1126
+ VE++ L G W G+H E + L LL+W+ +F E H PLDL D + RR + AR IA L + + + GV C N + + +++ GG LS V R+LS+D G PDL+LWRP+ RG + V EVK D+LS QRAW++AL A V V RV APP
Sbjct: 1411 VGVEDLALHHYASAPGGGWRGVHSEGGVWGCLWALLMWDVLFTDVPEVFR-HPFQTAPLDLDSDAFYPARRAAVDARLQAIAGGAAPEL---LRAAWRSHCGVWCRGVNWGRLPLEDLVDIARCVGGLGLSVVCRLLSEDSGGWRGGMPDLLLWRPE----RG-----------------------------DALVSEVKGPRDRLSDQQRAWMAALAAAEVRVEVLRVVE-APP 1607
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Match: A0A061RZ48_9CHLO (Fanconi-associated nuclease (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZ48_9CHLO) HSP 1 Score: 84.7 bits (208), Expect = 6.270e-14 Identity = 79/306 (25.82%), Postives = 122/306 (39.87%), Query Frame = 2
Query: 5 WIRLSMNLEHLGDGDACLESLRSACEDGFVSGGERVEVVQRLAAKHEQYGNPDDTPPLSPFP-EASEEQIVSTLRVAKRGNKRSSAGGRVILYEDSSGGTSSSVSIGGSGGQEAFLAQGAQDKDSITNGSNXXXXXXXTRGMSVEEVVLKEAREDDSGAWAGLHCETDLVMTLMMLLLWEEVFDPTVEAAGAHCMTNQPLDLYDVHFWKRRR----GLPARWSDIAAATDEHLWMDVGQRFDRYKGVLCARCNLASFSKQQVREVSLAFGGRRLSSVLRVLSQDLSHLNYGFPDLVLWRPKLQRRR 907
W+RLS++L HLG + LE +A D +V G+R + +R+ + G P P+ EA I V +G G + G T+ SVE + L+ ++ G + G+H E L L LLLW+ +FD +V A H + PLDL FW RR AR S+ A T + +R+ G CA + + E++ GG L++V R+ +QD ++ + G PDL+LW P+ + R
Sbjct: 344 WLRLSLDLHHLGRQEEALEVAETALADEWVRTGDRTALQRRVL----RLGRPPRRWRKPPWAMEAYCPAIWEPQEVVIQGRPTQRIAGAKSFFWGYDGHTT-----------------------------------------SVEGLALQHYAMEEHGGFKGMHSEGGLWSNLFALLLWDVLFDGSVPGAFVHPFHSAPLDLGTDSFWSGRRDSIEAALARVSEGLAPTI------IRERWRSCYGTRCAGLGWDRATLEDHVEIAECVGGEGLAAVCRLKAQDYANWSAGMPDLLLWSPESKEAR 598
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Match: A0A250XPM4_9CHLO (Fanconi-associated nuclease n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XPM4_9CHLO) HSP 1 Score: 84.7 bits (208), Expect = 8.850e-14 Identity = 75/299 (25.08%), Postives = 123/299 (41.14%), Query Frame = 2
Query: 5 WIRLSMNLEHLGDGDACLESLRSACEDGFVSGGERVEVVQRLAAKHEQYGNPD---DTPPLSPFPEASEEQIVSTLRVAKRGNKRSSAGGRVILYEDSSGGTSSSVSIGGSGGQEAFLAQGAQDKDSITNGSNXXXXXXXTRGMSVEEVVLKEAREDDSGAWAGLHCETDLVMTLMMLLLWEEVFDPTVEAAGAHCMTNQPLDL-YDVHFWKRRRGLPARWSDIAAATDEHLWMDVGQRFDRYKGVLCARCNLASFSKQQVREVSLAFGGRRLSSVLRVLSQDLSHLNYGFPDLVLWRP 889
W+RLSM+LEHLG+ +A L + +A D +V G+ + + +RL + G P P + ++V GR I S V + + F Q +SVEE+ L+ + G W GLH E + TL L++W+ + P + T PLDL D + R++ + R +A EH+ + +++ G C + +S +++ E+ G LS V R+L++D + L G PDL+LW P
Sbjct: 898 WLRLSMDLEHLGNTEAALNACEAALSDSWVRHGDLLAMQRRLL----RLGKPPRRWKRPRWAAVVSREPREVVIL--------------GRPIA---------SVVGV-----KSRFYNQAGLQ-------------------VSVEELALEHYASEGGGGWKGLHAEGGIWATLFGLIMWDVIMSPVQDVFRTPFQT-APLDLGTDAFYPARKQAIEDRLQAVAEGGAEHV---IKVCWEQNLGRWCRGVSWDQYSLEELLEICRCVGSLGLSVVCRMLAEDYAGLRGGMPDLLLWNP 1141 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7821.15847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7821.15847.1 >prot_H-paniculata_contig7821.15847.1 ID=prot_H-paniculata_contig7821.15847.1|Name=mRNA_H-paniculata_contig7821.15847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=377bp MNLEHLGDGDACLESLRSACEDGFVSGGERVEVVQRLAAKHEQYGNPDDTback to top mRNA from alignment at H-paniculata_contig7821:3599..9881+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7821.15847.1 ID=mRNA_H-paniculata_contig7821.15847.1|Name=mRNA_H-paniculata_contig7821.15847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6283bp|location=Sequence derived from alignment at H-paniculata_contig7821:3599..9881+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7821:3599..9881+ >mRNA_H-paniculata_contig7821.15847.1 ID=mRNA_H-paniculata_contig7821.15847.1|Name=mRNA_H-paniculata_contig7821.15847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at H-paniculata_contig7821:3599..9881+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |