mRNA_H-paniculata_contig7819.15844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7819.15844.1
Unique NamemRNA_H-paniculata_contig7819.15844.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Match: D8LM41_ECTSI (MEKHLA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM41_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 6.870e-22
Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 2
Query:  149 DDLLPDHFISEATVAWVQLMLDSWESQVLGGEPLIPDRSGSSSTEVQQAQQLANLRYAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQEERSAYLRTVLEDKEQVSAA-NYSGV 538
            +D+LP      ATVAWVQLMLDS+E     G  +I        +  +Q +++      +VSHDFLRN EDPIF+Y N  +L+TFGY W+EF  +PSRKSC E  + ER   L  V E  E V    NY+GV
Sbjct:   81 EDMLPAQSKGSATVAWVQLMLDSFEDTF--GRGIIDGLDRERLSPEEQEREIDRSDVPIVSHDFLRNAEDPIFIYGNAASLRTFGYTWEEFTTLPSRKSCEENLRGEREELLTIVREVDENVPPPQNYAGV 209          
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Match: UPI00198040F1 (MEKHLA domain-containing protein n=1 Tax=Burkholderia sp. Ac-20379 TaxID=2703900 RepID=UPI00198040F1)

HSP 1 Score: 91.7 bits (226), Expect = 1.810e-18
Identity = 62/167 (37.13%), Postives = 89/167 (53.29%), Query Frame = 2
Query:  155 LLPDHFISEATVAWVQLMLDSWESQVLGGEPLIPDRSGSSSTEVQQAQQLANLRYAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQEERSAYLRTVLEDKEQVSAANYSGVRLKKSGESFLIAETVLWNVIDQQGNLVGQACRIASSTPL 655
            +LP H   E    + +L+ DS  +++LG +PL+P     S  E   A    +  +AV++H+      DP+F+Y N  A Q FGY+WDE  ++PSR S     +EER  +L  V   +     A Y GVR+ KSG+ F+I E  LW +ID  G L GQA  I  +  L
Sbjct:    1 MLPLHSAPE----FYRLLADS-HARLLG-KPLVPHGDSLSPAEAA-AWLYEHAPFAVLAHN---TAADPVFIYGNKAAQQRFGYDWDEITRLPSRLSAEAPNREERQRFLERV---QRLGYEAGYRGVRITKSGQRFMIEEATLWQLIDADGTLHGQAVTILRTREL 154          
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Match: N2IXR8_9PSED (MEKHLA domain-containing protein n=10 Tax=Pseudomonadaceae TaxID=135621 RepID=N2IXR8_9PSED)

HSP 1 Score: 91.7 bits (226), Expect = 2.110e-18
Identity = 62/170 (36.47%), Postives = 91/170 (53.53%), Query Frame = 2
Query:  164 DHFISEAT-----VAWVQLMLDSWESQVLGGEPLIPDR-SGSSSTEVQQAQQLANLRYAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQEERSAYLRTVLEDKEQVSAANYSGVRLKKSGESFLIAETVLWNVIDQQGNLVGQACRIASSTPL 655
            D F+ EAT     V    L+  S+E  V  G+ L+P+  SG ++ +        +  + V++H+    + DP+F+YAN  A Q FGY W+E  Q+PSR S G + +EER  ++  V  D     ++ YSGVR+ KSG+ FLI    LW + D +G   GQA  I  S  L
Sbjct:    3 DAFMKEATPMKTDVLLFTLLATSYEQHV--GKRLVPEPLSGQAAADWLYY----SAPFCVLAHNA---ENDPVFMYANQAAQQRFGYSWEEITQLPSRLSAGPQDREERQRFIDQVKRDG---YSSGYSGVRVMKSGQCFLIQNATLWQLHDAEGRYQGQAVLIPQSKDL 160          
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Match: A0A117QAZ7_STRAT (MEKHLA domain-containing protein n=1 Tax=Streptomyces antibioticus TaxID=1890 RepID=A0A117QAZ7_STRAT)

HSP 1 Score: 90.9 bits (224), Expect = 3.350e-18
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  233 LGGEPLIPDRSGSSSTEVQQAQQLANLRYAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQEERSAYLRTVLEDKEQVSAANYSGVRLKKSGESFLIAETVLWNVIDQQGNLVGQACRIASSTP 652
            L GEPL P    S     +   + A   +  ++HD      DP F+YAN+ A   FGY WDEFV +PSR S   + Q +R A++R V E      A  Y G+R+ +SGE F I +  +W+++D +G + GQA    S TP
Sbjct:   19 LVGEPLCPSAGKSEPDAARWLYERAP--FGRLAHD---TSADPQFIYANSTAQGCFGYSWDEFVGLPSRLSARPDSQADRDAFVRAVTEHH---YATGYRGIRIGRSGEPFWIEDVTMWDLLDGEGRIHGQAAVFRSWTP 150          
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Match: A0A3D8JSS6_9BURK (MEKHLA domain-containing protein n=1 Tax=Trinickia dinghuensis TaxID=2291023 RepID=A0A3D8JSS6_9BURK)

HSP 1 Score: 90.1 bits (222), Expect = 6.710e-18
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 2
Query:  191 AWVQLMLDSWESQVLGGEPLIPDRSGSSSTEVQQAQQLANLRYAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQEERSAYLRTVLEDKEQVSAANYSGVRLKKSGESFLIAETVLWNVIDQQGNLVGQA 628
            A+ QL+ DS+    L G PL+P+   + S     A       +AV++H+      DP+F+Y N  A Q FGY WDE   +PSR S     +EER  +L  V   +       Y GVR+ KSGE F+I E  LW ++D +G L GQA
Sbjct:   12 AFYQLLADSYAR--LLGRPLVPN---AMSVTDAAAWLYERAPFAVLAHNV---DPDPVFIYGNKAAQQRFGYSWDEITHLPSRLSAEAPNREERQQFLERV---RRLGYETGYKGVRITKSGERFMIEEATLWQLLDAEGKLHGQA 146          
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Match: UPI001E475066 (MEKHLA domain-containing protein n=2 Tax=Streptomyces fumigatiscleroticus TaxID=66371 RepID=UPI001E475066)

HSP 1 Score: 90.9 bits (224), Expect = 7.590e-18
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  317 YAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQEERSAYLRTVLEDKEQVSAANYSGVRLKKSGESFLIAETVLWNVIDQQGNLVGQACRIASSTP 652
            + +++HD      DP+FVYAN  A ++FGY WDEFV MPSR S   + +E+R A +R V  D        Y GVR+ KSG +F I +  +W+++D +G + GQA    S +P
Sbjct:   61 FGLLAHD---TSADPLFVYANRTAQESFGYSWDEFVGMPSRLSARPDAREDREALVRAVTRDHR---VTGYRGVRVAKSGRTFWIEDVTMWDLMDARGRIHGQAAVFRSVSP 166          
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Match: A0A2N7VEE9_9BURK (MEKHLA domain-containing protein n=1 Tax=Trinickia dabaoshanensis TaxID=564714 RepID=A0A2N7VEE9_9BURK)

HSP 1 Score: 89.7 bits (221), Expect = 8.570e-18
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  188 VAWVQLMLDSWESQVLGGEPLIPDRSGSSSTEVQQAQQLANLR--YAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQEERSAYLRTVLEDKEQVSAANYSGVRLKKSGESFLIAETVLWNVIDQQGNLVGQA 628
            +A+ QL++ S  +Q+LG  PL+P+     +  V +A +    R  +AV++H+      DP+F+YAN  A + FGY WDE +++PSR S     +EER  +L  V   +     A Y GVR+ KSG+ F+I E  LW ++D++G L GQA
Sbjct:    8 LAFYQLLVAS-HAQLLG-RPLVPE-----TMPVLEAAEWLYERAPFAVLAHN---TDPDPLFIYANKAAQRRFGYSWDEIIRLPSRLSAEAPNREERQQFLERV---QRLGYEAGYKGVRVTKSGQRFIIEEATLWQLLDEEGKLHGQA 143          
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Match: A0A2T2R9V3_9CYAN (MEKHLA domain-containing protein n=1 Tax=Cyanobacteria bacterium SW_9_44_58 TaxID=1919144 RepID=A0A2T2R9V3_9CYAN)

HSP 1 Score: 89.7 bits (221), Expect = 1.020e-17
Identity = 58/157 (36.94%), Postives = 83/157 (52.87%), Query Frame = 2
Query:  158 LPDHFISEATVAWVQLMLDSWESQVLGGEPLIPDRSGSSSTEVQQAQQLANLRYAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQEERSAYLRTVLEDKEQVSAANYSGVRLKKSGESFLIAETVLWNVIDQQGNLVGQA 628
            +P+   +   +   +L+LDS+    L G+ L+ D + S  T +     L    +A+VSH     + DPIF + N  AL+ F Y+WDEF+Q+PSRKS     Q ER+  L+ V E   Q    NY GVR+   G  F+I    +WN+ID  G   GQA
Sbjct:    4 IPNSLTTRFYIEHGKLLLDSFYR--LTGKELLADTTASHDTIID----LFYAPFALVSHG---TETDPIFNFGNQAALERFKYDWDEFIQLPSRKSAEPMEQSERNVLLQKVSE---QGFIDNYRGVRISSDGSRFVIENGTIWNLIDAHGRYHGQA 148          
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Match: A0A849RAH2_9GAMM (MEKHLA domain-containing protein n=1 Tax=Methyloglobulus sp. TaxID=2518622 RepID=A0A849RAH2_9GAMM)

HSP 1 Score: 89.4 bits (220), Expect = 1.280e-17
Identity = 57/156 (36.54%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  167 HFISEATVAWVQLMLDSWESQVLGGEPLIPDRSGSSSTEVQQAQQLANLRYAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQEERSAYLRTVLEDKEQVSAANYSGVRLKKSGESFLIAETVLWNVIDQQGNLVGQACR 634
            HF+S+     V L+ +S++ ++LGGE +       + T    A+ L    + VVSH+      DP+F YAN  AL+ FG+ W+EF Q+PS+ S     Q ER   L  V ++      A+Y G+R+ K+G  FLI   V+WN++D  GN  GQA +
Sbjct:    9 HFLSDH----VTLLSNSYQ-KLLGGELI-----SKNHTHDTLAKALFYAPFVVVSHN---TATDPVFNYANLKALELFGFNWEEFTQLPSKLSAESIHQLERDKLLAEVSQNG---YLASYQGIRITKTGSRFLIKNAVVWNLVDDDGNYAGQAAK 148          
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Match: A0A4Y3V8R6_9ACTN (MEKHLA domain-containing protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A4Y3V8R6_9ACTN)

HSP 1 Score: 88.2 bits (217), Expect = 4.500e-17
Identity = 57/160 (35.62%), Postives = 85/160 (53.12%), Query Frame = 2
Query:  173 ISEATVAWVQLMLDSWESQVLGGEPLIPDRSGSSSTEVQQAQQLANLRYAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQEERSAYLRTVLEDKEQVSAANYSGVRLKKSGESFLIAETVLWNVIDQQGNLVGQACRIASSTP 652
            +  A  A+ +L+L S    V  GEPL P    +     +   + A   + +++HD      DP FVYAN+ A   FGY W EFV +PSR S   +GQE+R A++R V        A  Y G+R+ KSG +F I +  +W+++D +G + GQA    S +P
Sbjct:   15 VRPADPAFGELLLSSHLRLV--GEPLCPAVWETGRDAARWLYEQAP--FGLLAHD---TSADPRFVYANSTAQNCFGYSWGEFVGLPSRLSARPDGQEDREAFVRAVTAHH---YATGYRGIRVGKSGRAFWIEDVTMWDLMDTEGRIHGQAAVFRSWSP 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7819.15844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM41_ECTSI6.870e-2245.80MEKHLA domain-containing protein n=1 Tax=Ectocarpu... [more]
UPI00198040F11.810e-1837.13MEKHLA domain-containing protein n=1 Tax=Burkholde... [more]
N2IXR8_9PSED2.110e-1836.47MEKHLA domain-containing protein n=10 Tax=Pseudomo... [more]
A0A117QAZ7_STRAT3.350e-1837.86MEKHLA domain-containing protein n=1 Tax=Streptomy... [more]
A0A3D8JSS6_9BURK6.710e-1838.36MEKHLA domain-containing protein n=1 Tax=Trinickia... [more]
UPI001E4750667.590e-1841.07MEKHLA domain-containing protein n=2 Tax=Streptomy... [more]
A0A2N7VEE9_9BURK8.570e-1838.26MEKHLA domain-containing protein n=1 Tax=Trinickia... [more]
A0A2T2R9V3_9CYAN1.020e-1736.94MEKHLA domain-containing protein n=1 Tax=Cyanobact... [more]
A0A849RAH2_9GAMM1.280e-1736.54MEKHLA domain-containing protein n=1 Tax=Methylogl... [more]
A0A4Y3V8R6_9ACTN4.500e-1735.63MEKHLA domain-containing protein n=3 Tax=Streptomy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7819contigH-paniculata_contig7819:7288..10250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue3.1e-20
Seed eggNOG ortholog2880.D8LM41
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MEKHLA domain
EggNOG OGs2EZSM@1,2T11Y@2759
Ec32 ortholog descriptionMEKHLA
Ec32 orthologEc-06_002380.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1207
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7819.15844.1prot_H-paniculata_contig7819.15844.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7819 7304..9704 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930972.2670035-UTR-H-paniculata_contig7819:7287..73031622930972.2670035-UTR-H-paniculata_contig7819:7287..7303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7819 7288..7303 +
1691481533.4001322-UTR-H-paniculata_contig7819:7287..73031691481533.4001322-UTR-H-paniculata_contig7819:7287..7303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7819 7288..7303 +
1622930972.3364847-UTR-H-paniculata_contig7819:9704..102501622930972.3364847-UTR-H-paniculata_contig7819:9704..10250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7819 9705..10250 +
1691481533.4443436-UTR-H-paniculata_contig7819:9704..102501691481533.4443436-UTR-H-paniculata_contig7819:9704..10250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7819 9705..10250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930972.285543-CDS-H-paniculata_contig7819:7303..76611622930972.285543-CDS-H-paniculata_contig7819:7303..7661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7819 7304..7661 +
1691481533.415628-CDS-H-paniculata_contig7819:7303..76611691481533.415628-CDS-H-paniculata_contig7819:7303..7661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7819 7304..7661 +
1622930972.3020003-CDS-H-paniculata_contig7819:8540..87011622930972.3020003-CDS-H-paniculata_contig7819:8540..8701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7819 8541..8701 +
1691481533.4251544-CDS-H-paniculata_contig7819:8540..87011691481533.4251544-CDS-H-paniculata_contig7819:8540..8701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7819 8541..8701 +
1622930972.3207314-CDS-H-paniculata_contig7819:9578..97041622930972.3207314-CDS-H-paniculata_contig7819:9578..9704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7819 9579..9704 +
1691481533.4348001-CDS-H-paniculata_contig7819:9578..97041691481533.4348001-CDS-H-paniculata_contig7819:9578..9704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7819 9579..9704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7819.15844.1

>prot_H-paniculata_contig7819.15844.1 ID=prot_H-paniculata_contig7819.15844.1|Name=mRNA_H-paniculata_contig7819.15844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
MAIRTSSRASKCPQLTVKGNGDQQQHGGQTTATTDANSCSDDDSDDLLPD
HFISEATVAWVQLMLDSWESQVLGGEPLIPDRSGSSSTEVQQAQQLANLR
YAVVSHDFLRNKEDPIFVYANTLALQTFGYEWDEFVQMPSRKSCGEEGQE
ERSAYLRTVLEDKEQVSAANYSGVRLKKSGESFLIAETVLWNVIDQQGNL
VGQACRIASSTPLP*
back to top

mRNA from alignment at H-paniculata_contig7819:7288..10250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7819.15844.1 ID=mRNA_H-paniculata_contig7819.15844.1|Name=mRNA_H-paniculata_contig7819.15844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2963bp|location=Sequence derived from alignment at H-paniculata_contig7819:7288..10250+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTACGAAAATCGCACATGGCTATCAGGACAAGCAGCAGAGCATCCAAAT GCCCCCAACTCACGGTAAAAGGGAATGGAGATCAGCAACAACACGGAGGA CAAACGACGGCTACCACAGACGCAAACAGCTGCAGTGATGATGACAGCGA CGATCTATTGCCCGACCACTTCATATCAGAGGCCACCGTTGCTTGGGTGC AGCTGATGCTCGACTCCTGGGAATCCCAGGTGCTGGGTGGAGAGCCACTG ATACCTGACCGCAGCGGCAGCAGCAGCACTGAGGTGCAGCAAGCGCAGCA GCTGGCAAACCTACGTTACGCCGTCGTATCGCACGACTTCCTCCGAAACA AGGAGGACCCCATCTTCGTTTATGGTAATCTTCGCGTACGGTGATCTTTA TTTTCAGTAGAGCTCGCGTCCGAGTTTTGTTCCCAGAGCGTTTTCACCCG TGACATACGCGACGGTCGATTCTTCACTGTTGTTGAACTTGGTGTAGTCG TTAGAACGTTCCTGCGGTACGATAGCGCTCGTTCTTGATGCTGATTACCT CCCACTAAAATAGCGCTCCGTGCAATTCTACGTCTGCCACCAGCGTAACT TGCCGTGTGTGTGGTAGTGCGAAGTGGGGCAGCTGGGTGAGATCGCGTAT TGGATAAGGTTTAATCAGAAAGCACATTCGAGTGCATTCGTGTATCCAAT CTGTTTGGTTTATTACTTCACCAGCTGTTTGTGTTTTCCTCGAGTCAGGC AGCGTTGCCGTAAACAAATACACAGTTGCAAGTGGGCGTACCATGGGGCT ACTAGCTAGGCAGCATTTTCTCAAAATCAATCCTTGGTTCTGTTTAGCTT CAGAACGCAATGGTGTACCAACATGGGTAAGTTGGAACGAACCTCCGAAA GTACGAGCCGTACTATTCCAACTGGGTAACTTTTCGATTTTTCTCGGGGG GGTTTATTTCAATTTTTGACACTTGTAGTCGGTCTCCGTGTACATTAAAT AAGAACAATATAGTCAACATCACAGAAACTACGGTTTGTTTCTTGAACGC AGAATTACGAGTTGGAAAGTTCGTAGAGTTGCTGTACTGTCCCGATTACT CAACAACTGTTCATCCATGGATTTTTGTCCGCCTTCTGTATCTTTGCCCG CCTCTGCGTTGACATTGTTTAGTGTTTTTTTTGTCACGATCGGGTTTATT GGGTTTGCGCTCGAATCACTAACGAAATTAAACGTATTGAATGAAACATA CAGCAAATACGCTAGCGCTACAGACGTTCGGCTACGAGTGGGACGAGTTC GTGCAGATGCCGTCGCGTAAGTCTTGCGGAGAAGAAGGGCAGGAAGAGCG AAGCGCCTATCTGCGTACGGTTCTCGAGGACAAGGAGCAAGTGTCCGCTG CGAATTACTCAGGGGTATGTTAAGGACAGATCGGGATGAGGGGTTAGAGT CCCCGCACGACCGGTGGGCCACAGTTGGAGCCTAGACGCATTGGCCAGAG AGTCTCCAGGAAGAGACGATCCAAGGATTTTCAACATTTCAACATTTGTT CGTATTTTTGTTGCTGGTTGTGATGCGGTCAACGGAGCAAAATGTGCGGT TGTTCCCATAACCGAACCTTTCCAATCCCAAATGAAAGAAAAAAAAGACG CACTGTCACTCCTTCTGGGATTGTCGCTTGTTTTTTGGCAAAAAGCGCGT ACCCCTCACCATATAACGACTCGCTGATGGAAACATTGGGGTGTTTTATA CAAGTATTCACTGTTGAGAAGGGCAAGATCCACCAGCGCTCGCCAACGTG TGTGTGCTTCTTGTCTCATATAGATGATAAAGCCTATATGTCCGCAAGCA CTGACTTTTGTGGAATTTGACGGTGGGGTTGTATTCTGTTTCTATATCTT GGAATGCACTCTAGCCAACATATGTGAAAGCATCGCGAGGACAGGGTAGC GGTTGAAATTGGCGGTGACTTAACGATCGTATCGTCTGTAATTATTGCGG TGGTGACGCTGGAATTTTCCTCCTTTGTTCACCTCCCGTCCAAATCGTAA GATCATTTTGCACGCTCCCCATTTTTTCTGAAATTATTCTGCAACTGGAG GCGAACAAATTGCGCGCCTTCAAGTGTTAACCCTCTCTCCTCCATCAAAA GTTTCGCCTGCTAGCACTAGAGTTATACTAGGTAGCTCTACCGCATATTT GTCCTCGTATATTTCTTTATTTGCGCACAAATCTTGGAAATCCCCACCCT CCCCCTGCTATGCCATCTCCTGGTTACCTTCGCTGTTATAGGTGCGACTG AAAAAATCTGGAGAGAGCTTTCTCATTGCTGAGACGGTGCTTTGGAATGT GATCGACCAGCAAGGGAACCTCGTCGGACAGGCTTGCAGAATCGCCTCTT CCACACCATTACCATGACGTTCACACGCATAGATACGTACGTCCATGCAT GATGCGTACATGAAAGAATGCCTCCATGCTGTCAACACTTGCGTCAAGGA CAGTCTCATCACAGTACAAGCGAGGTGGAGTTTTCCATAGAGGGCATTGA TGGGCGAGGTTTGACTCTACATACGATTATGAAGACAACAGCAATGAATT TCATGGTTGTCCCCTGGTGTTGTGGGATGATAGGCTCTCACGCAGTGATT GAAGTCGAACTTCGTGTTCTTCGCGAGGAACCTTTTTGCCCGTAGATCGC TCCGCGGGGCTTGAGTTCTCAAGTGTCAGTGAGGTACCTGTTGTTGCTGC ATCTTCTTGTACTTTCTATTCAAGTATATGGAAATCCGCTAATTGCTTGT TCAGTCTAGTACAACTGCGAGCCGTGCCAATACTATCATCCTGCTGTTGC TAGGTTACGCTGTTATTTCATCGTTTAAGTTTACTGAATATCCTAGTTGC AATGCAAGCTACTAGCAACCTGAATGACGACGTGGCGTCCCGTCTCAGGA ATATCAAAACCGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7819:7288..10250+

>mRNA_H-paniculata_contig7819.15844.1 ID=mRNA_H-paniculata_contig7819.15844.1|Name=mRNA_H-paniculata_contig7819.15844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig7819:7288..10250+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTATCAGGACAAGCAGCAGAGCATCCAAATGCCCCCAACTCACGGT
AAAAGGGAATGGAGATCAGCAACAACACGGAGGACAAACGACGGCTACCA
CAGACGCAAACAGCTGCAGTGATGATGACAGCGACGATCTATTGCCCGAC
CACTTCATATCAGAGGCCACCGTTGCTTGGGTGCAGCTGATGCTCGACTC
CTGGGAATCCCAGGTGCTGGGTGGAGAGCCACTGATACCTGACCGCAGCG
GCAGCAGCAGCACTGAGGTGCAGCAAGCGCAGCAGCTGGCAAACCTACGT
TACGCCGTCGTATCGCACGACTTCCTCCGAAACAAGGAGGACCCCATCTT
CGTTTATGATGGCTATCAGGACAAGCAGCAGAGCATCCAAATGCCCCCAA
CTCACGGTAAAAGGGAATGGAGATCAGCAACAACACGGAGGACAAACGAC
GGCTACCACAGACGCAAACAGCTGCAGTGATGATGACAGCGACGATCTAT
TGCCCGACCACTTCATATCAGAGGCCACCGTTGCTTGGGTGCAGCTGATG
CTCGACTCCTGGGAATCCCAGGTGCTGGGTGGAGAGCCACTGATACCTGA
CCGCAGCGGCAGCAGCAGCACTGAGGTGCAGCAAGCGCAGCAGCTGGCAA
ACCTACGTTACGCCGTCGTATCGCACGACTTCCTCCGAAACAAGGAGGAC
CCCATCTTCGTTTATGCAAATACGCTAGCGCTACAGACGTTCGGCTACGA
GTGGGACGAGTTCGTGCAGATGCCGTCGCGTAAGTCTTGCGGAGAAGAAG
GGCAGGAAGAGCGAAGCGCCTATCTGCGTACGGTTCTCGAGGACAAGGAG
CAAGTGTCCGCTGCGAATTACTCAGGGCAAATACGCTAGCGCTACAGACG
TTCGGCTACGAGTGGGACGAGTTCGTGCAGATGCCGTCGCGTAAGTCTTG
CGGAGAAGAAGGGCAGGAAGAGCGAAGCGCCTATCTGCGTACGGTTCTCG
AGGACAAGGAGCAAGTGTCCGCTGCGAATTACTCAGGGGTGCGACTGAAA
AAATCTGGAGAGAGCTTTCTCATTGCTGAGACGGTGCTTTGGAATGTGAT
CGACCAGCAAGGGAACCTCGTCGGACAGGCTTGCAGAATCGCCTCTTCCA
CACCATTACCATGAGTGCGACTGAAAAAATCTGGAGAGAGCTTTCTCATT
GCTGAGACGGTGCTTTGGAATGTGATCGACCAGCAAGGGAACCTCGTCGG
ACAGGCTTGCAGAATCGCCTCTTCCACACCATTACCATGA
back to top