mRNA_H-paniculata_contig7814.15839.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7814.15839.1
Unique NamemRNA_H-paniculata_contig7814.15839.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7814.15839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7814contigH-paniculata_contig7814:610..2590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1197
Cds size1197
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7814.15839.1prot_H-paniculata_contig7814.15839.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7814 610..2590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930971.6120765-CDS-H-paniculata_contig7814:609..7541622930971.6120765-CDS-H-paniculata_contig7814:609..754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7814 610..754 -
1691481533.1235144-CDS-H-paniculata_contig7814:609..7541691481533.1235144-CDS-H-paniculata_contig7814:609..754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7814 610..754 -
1622930971.6370656-CDS-H-paniculata_contig7814:1130..12691622930971.6370656-CDS-H-paniculata_contig7814:1130..1269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7814 1131..1269 -
1691481533.1365538-CDS-H-paniculata_contig7814:1130..12691691481533.1365538-CDS-H-paniculata_contig7814:1130..1269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7814 1131..1269 -
1622930971.6523082-CDS-H-paniculata_contig7814:1620..19781622930971.6523082-CDS-H-paniculata_contig7814:1620..1978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7814 1621..1978 -
1691481533.1467779-CDS-H-paniculata_contig7814:1620..19781691481533.1467779-CDS-H-paniculata_contig7814:1620..1978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7814 1621..1978 -
1622930971.6707444-CDS-H-paniculata_contig7814:2035..25901622930971.6707444-CDS-H-paniculata_contig7814:2035..2590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7814 2036..2590 -
1691481533.1567802-CDS-H-paniculata_contig7814:2035..25901691481533.1567802-CDS-H-paniculata_contig7814:2035..2590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7814 2036..2590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7814.15839.1

>prot_H-paniculata_contig7814.15839.1 ID=prot_H-paniculata_contig7814.15839.1|Name=mRNA_H-paniculata_contig7814.15839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=399bp
KVCQNGAHPRRSLVRLGDYYLRSGDGRPTHAWLSTVAESSILEETLRGET
ERRDSDNGNLANSLLRGEAVLCFGFLNWEARGRIWRKRISPTDMMPTAIV
YVPTTRSIVVACRGSCSNSCDDNAPCVGNIARVGTRRACKTPRDHQPNVV
VSSLRVFSVDTLEERPGEAFYMRPGIRITGLARLGSMPRGAGTATDSGER
VGQDMNIDTAAAIGGDAIAVACCFHMGDDGEALNITHKGKRNSGMQKHEA
GEATVTNSTLFTSGDDWNDGIDSVQDCAATATIVAAFEVVACGNGQGGQL
HERCELLSASSEKAGACFGLEPLAGCFAAASLDDRMLVFGWAGLGKEDHL
RSDVPVTQLRLDSVACCRARNQGCITALATCDSFVAVAEFLHSVSVYR*
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mRNA from alignment at H-paniculata_contig7814:610..2590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7814.15839.1 ID=mRNA_H-paniculata_contig7814.15839.1|Name=mRNA_H-paniculata_contig7814.15839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1981bp|location=Sequence derived from alignment at H-paniculata_contig7814:610..2590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTATGCCAAAATGGAGCTCATCCTCGTCGAAGCCTCGTGCGCCTTGG
GGATTACTACCTTAGATCAGGCGACGGTAGACCCACCCACGCTTGGCTAT
CAACCGTGGCAGAATCAAGCATTCTCGAGGAAACACTGCGAGGCGAAACG
GAACGTAGAGACAGTGACAACGGTAACTTAGCTAACTCTCTCCTTCGGGG
TGAAGCGGTTCTTTGTTTTGGATTTCTTAACTGGGAAGCACGTGGACGAA
TATGGCGCAAGCGAATCTCACCCACGGATATGATGCCTACCGCCATTGTG
TACGTTCCTACCACCCGGTCAATCGTAGTAGCTTGCCGTGGCAGCTGTAG
CAACAGCTGTGATGACAATGCCCCCTGCGTCGGAAACATTGCCCGTGTTG
GTACCAGAAGAGCATGTAAGACTCCCCGAGATCATCAGCCCAATGTAGTA
GTATCCAGCCTCCGCGTGTTCAGCGTGGATACACTGGAAGAGAGACCTGG
CGAAGCTTTCTACATGCGCCCAGGGATACGAATCACTGGACTTGCACGCC
TAGGTGTCAAGTCCACGACACGGATATCGTTAAGAAGCAACCACAGTGTA
CGACAGACGAAGAGTATGCCGAGGGGTGCGGGGACTGCTACCGATAGTGG
AGAACGGGTAGGACAAGATATGAACATAGATACTGCGGCCGCCATCGGCG
GCGACGCGATAGCCGTGGCATGTTGCTTCCACATGGGTGATGACGGAGAA
GCCTTAAATATTACTCATAAGGGAAAACGTAATTCTGGGATGCAGAAGCA
CGAGGCGGGGGAAGCCACCGTGACAAACTCTACACTGTTTACGAGCGGTG
ATGACTGGAACGACGGTATCGACAGCGTCCAGGATTGTGCAGCAACTGCA
ACTATCGTTGCGGCTTTCGAAGTTGTAGCTTGCGGCAACGGACAAGGAGG
GCAATTACACGAAAGGTGCGGTGTGGGGTGGGATGGCACGATCGGGTGAC
TCGCGAATCGGGCGTCTTGACAATGTTTCGACTGTAAACATGGCACAGTA
ACGTCGGCCTCCCTGAGGTACACGTGTTAGGGGCACAGGTGTCATGAACA
GGCACAGCTACGACTCCGGGCACAGCATTGGGATTGCCCCGCTTGAAAAC
GCATGCATTTATTAATACGCTGGGGTCGCGGGGCTTGGGGAAATGTGCGC
ATGCTACCGCGAAGACACACAATCTCGATATTTTCCTACCGTCAAACCGT
GGTGAACACGCGCAGGCCTCGAGAAGGTAGTGCAAAGTACGACCAAGATA
ATGTCAGCGGTACCTTCTTAGAGCTGTTGTCTGCGTCCAGCGAGAAAGCA
GGGGCGTGCTTCGGCCTCGAACCACTGGCGGGGTGTTTCGCGGCAGCTTC
TTTAGATGACAGAATGCTCGTTTTTGGATGGGCTGGGCTGGGAAAAGAAG
ATCACCTCAGGTGACAGTTAGTCTCAGCACGGTCATGGTCCTTTTGTTGA
GGATCCCTCGTACCTGTCGAACCCCGACAGGCAATCAATGGATGGATTCT
AGTGGGGAATGGGTGGGCCGTCGTCTATTTATCGCCGACGTGGCGTCTAC
GGCAGCACTGTCTACCTGAACAATGAGCTGATTTCGACGGGATCCGTAAA
CCGTGCGAGGTCGATTAATGTCAGAACATTCTGTACCGATAGCTATGGTT
TCGATTATTGTCAGTACATACTGTATCGATAGCTACCTGCTGTAAACACA
TGCGTGAAATGCGTGCGTCTATGACCCCCGTAAGCCGTACACAGAAAAGC
GTTTCCCCATCTCCTATACCTTTGACAATGACACAGGTCTGACGTACCCG
TGACACAGCTAAGACTAGATTCGGTTGCGTGCTGTCGTGCGCGAAACCAG
GGCTGTATCACGGCTCTTGCCACATGCGATAGCTTTGTCGCTGTTGCTGA
ATTCCTTCACTCTGTGTCAGTGTACAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig7814:610..2590-

>mRNA_H-paniculata_contig7814.15839.1 ID=mRNA_H-paniculata_contig7814.15839.1|Name=mRNA_H-paniculata_contig7814.15839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2394bp|location=Sequence derived from alignment at H-paniculata_contig7814:610..2590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTATGCCAAAATGGAGCTCATCCTCGTCGAAGCCTCGTGCGCCTTGG
GGATTACTACCTTAGATCAGGCGACGGTAGACCCACCCACGCTTGGCTAT
CAACCGTGGCAGAATCAAGCATTCTCGAGGAAACACTGCGAGGCGAAACG
GAACGTAGAGACAGTGACAACGGTAACTTAGCTAACTCTCTCCTTCGGGG
TGAAGCGGTTCTTTGTTTTGGATTTCTTAACTGGGAAGCACGTGGACGAA
TATGGCGCAAGCGAATCTCACCCACGGATATGATGCCTACCGCCATTGTG
TACGTTCCTACCACCCGGTCAATCGTAGTAGCTTGCCGTGGCAGCTGTAG
CAACAGCTGTGATGACAATGCCCCCTGCGTCGGAAACATTGCCCGTGTTG
GTACCAGAAGAGCATGTAAGACTCCCCGAGATCATCAGCCCAATGTAGTA
GTATCCAGCCTCCGCGTGTTCAGCGTGGATACACTGGAAGAGAGACCTGG
CGAAGCTTTCTACATGCGCCCAGGGATACGAATCACTGGACTTGCACGCC
TAGGTAAGGTATGCCAAAATGGAGCTCATCCTCGTCGAAGCCTCGTGCGC
CTTGGGGATTACTACCTTAGATCAGGCGACGGTAGACCCACCCACGCTTG
GCTATCAACCGTGGCAGAATCAAGCATTCTCGAGGAAACACTGCGAGGCG
AAACGGAACGTAGAGACAGTGACAACGGTAACTTAGCTAACTCTCTCCTT
CGGGGTGAAGCGGTTCTTTGTTTTGGATTTCTTAACTGGGAAGCACGTGG
ACGAATATGGCGCAAGCGAATCTCACCCACGGATATGATGCCTACCGCCA
TTGTGTACGTTCCTACCACCCGGTCAATCGTAGTAGCTTGCCGTGGCAGC
TGTAGCAACAGCTGTGATGACAATGCCCCCTGCGTCGGAAACATTGCCCG
TGTTGGTACCAGAAGAGCATGTAAGACTCCCCGAGATCATCAGCCCAATG
TAGTAGTATCCAGCCTCCGCGTGTTCAGCGTGGATACACTGGAAGAGAGA
CCTGGCGAAGCTTTCTACATGCGCCCAGGGATACGAATCACTGGACTTGC
ACGCCTAGGTAGTATGCCGAGGGGTGCGGGGACTGCTACCGATAGTGGAG
AACGGGTAGGACAAGATATGAACATAGATACTGCGGCCGCCATCGGCGGC
GACGCGATAGCCGTGGCATGTTGCTTCCACATGGGTGATGACGGAGAAGC
CTTAAATATTACTCATAAGGGAAAACGTAATTCTGGGATGCAGAAGCACG
AGGCGGGGGAAGCCACCGTGACAAACTCTACACTGTTTACGAGCGGTGAT
GACTGGAACGACGGTATCGACAGCGTCCAGGATTGTGCAGCAACTGCAAC
TATCGTTGCGGCTTTCGAAGTTGTAGCTTGCGGCAACGGACAAGGAGGGC
AATTACACGAAAGGTGCGAGTATGCCGAGGGGTGCGGGGACTGCTACCGA
TAGTGGAGAACGGGTAGGACAAGATATGAACATAGATACTGCGGCCGCCA
TCGGCGGCGACGCGATAGCCGTGGCATGTTGCTTCCACATGGGTGATGAC
GGAGAAGCCTTAAATATTACTCATAAGGGAAAACGTAATTCTGGGATGCA
GAAGCACGAGGCGGGGGAAGCCACCGTGACAAACTCTACACTGTTTACGA
GCGGTGATGACTGGAACGACGGTATCGACAGCGTCCAGGATTGTGCAGCA
ACTGCAACTATCGTTGCGGCTTTCGAAGTTGTAGCTTGCGGCAACGGACA
AGGAGGGCAATTACACGAAAGGTGCGAGCTGTTGTCTGCGTCCAGCGAGA
AAGCAGGGGCGTGCTTCGGCCTCGAACCACTGGCGGGGTGTTTCGCGGCA
GCTTCTTTAGATGACAGAATGCTCGTTTTTGGATGGGCTGGGCTGGGAAA
AGAAGATCACCTCAGAGCTGTTGTCTGCGTCCAGCGAGAAAGCAGGGGCG
TGCTTCGGCCTCGAACCACTGGCGGGGTGTTTCGCGGCAGCTTCTTTAGA
TGACAGAATGCTCGTTTTTGGATGGGCTGGGCTGGGAAAAGAAGATCACC
TCAGGTCTGACGTACCCGTGACACAGCTAAGACTAGATTCGGTTGCGTGC
TGTCGTGCGCGAAACCAGGGCTGTATCACGGCTCTTGCCACATGCGATAG
CTTTGTCGCTGTTGCTGAATTCCTTCACTCTGTGTCAGTGTACAGGTAAG
TCTGACGTACCCGTGACACAGCTAAGACTAGATTCGGTTGCGTGCTGTCG
TGCGCGAAACCAGGGCTGTATCACGGCTCTTGCCACATGCGATAGCTTTG
TCGCTGTTGCTGAATTCCTTCACTCTGTGTCAGTGTACAGGTAA
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