mRNA_H-paniculata_contig7813.15838.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7813.15838.1
Unique NamemRNA_H-paniculata_contig7813.15838.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Match: D8LBI4_ECTSI (Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI4_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 6.180e-74
Identity = 112/148 (75.68%), Postives = 134/148 (90.54%), Query Frame = 1
Query:    1 QDLESTDRDLTPWVITMFHCPWYNSNLAHQGERQQETAMRTLEPLLNKHKVAIIISGHVHAYERSHPVVDHELSVDAPMYLVVGGAGNREGHAADFYPKPDWSAFRDGSAYGSGRLSIRNSALALWEWT-STDEGSGVHDVAWINNPY 441
            +DLES DR LTPW++ M HCPWYNSNLAHQGERQ ETAMR +EPLL++HK A++I+GHVHAYERSHPVVD EL+ D P++LVVGGAGNREGHAADFYPKP+WSAFRDG+ YGSGRLSIR+S+LALWEWT ST + +G+HDVAW++NP+
Sbjct:  412 KDLESADRALTPWLVVMMHCPWYNSNLAHQGERQAETAMRAMEPLLHQHKAAVVITGHVHAYERSHPVVDFELAEDGPIHLVVGGAGNREGHAADFYPKPEWSAFRDGTVYGSGRLSIRSSSLALWEWTASTRDTAGLHDVAWVSNPF 559          
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Match: A0A6H5KE14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE14_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.650e-54
Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 1
Query:    1 QDLESTDRDLTPWVITMFHCPWYNSNLAHQGERQQETAMRTLEPLLNKHKVAIIISGHVHAYERSHPVVDHELSVDAPMYLVVGGAGNREGHAADFYPKPDWSAFRDGSAYGSGRLSIRNSALALWEW--TSTDEGSGVHDVAWINNPYPN 447
            +DL+  DR  TPW++ MFHCPW+NSNLAH GER   TAMR +EP+L ++K +++++GHVHAYERS PV+  +L+ D  + LVVGG+GN EG   D+Y  PDWSAFR+GSA+G G LS+ NS +ALWEW  +S +E + VHD AWI+N Y N
Sbjct:  164 EDLDGCDRSRTPWLVAMFHCPWHNSNLAHPGERMAATAMRAMEPVLFQNKASLVVAGHVHAYERSVPVLSGQLNDDGLVNLVVGGSGNNEGRDPDYYRLPDWSAFRNGSAFGFGTLSVMNSTMALWEWKASSNEEDTVVHDAAWISNKYTN 314          
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Match: D7FWJ2_ECTSI (Purple acid phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ2_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 3.590e-50
Identity = 83/145 (57.24%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 QDLESTDRDLTPWVITMFHCPWYNSNLAHQGERQQETAMRTLEPLLNKHKVAIIISGHVHAYERSHPVVDHELSVDAPMYLVVGGAGNREGHAADFYPKPDWSAFRDGSAYGSGRLSIRNSALALWEWTSTDEGSGVHDVAWINN 435
            +DL+  DR  TPW++ MFHCPW+NSNLAH GER   TAM  +EP+L +HK ++ I+GHVHAYERS PV+  +L+    + LVVGG+GN EG   D+Y  PDWSAFR+GSA+G G LS+ NS +ALWEW S ++   VHD AWI+N
Sbjct:  411 EDLDGCDRSRTPWLVAMFHCPWHNSNLAHPGERMAATAMHAMEPVLFQHKASLAIAGHVHAYERSLPVLSGQLNDAGLVNLVVGGSGNNEGRDPDYYRLPDWSAFRNGSAFGFGTLSVMNSTMALWEWKSNEDDPMVHDAAWISN 555          
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Match: A0A835YVM8_9STRA (Purple acid phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.190e-40
Identity = 72/147 (48.98%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    4 DLESTDRDLTPWVITMFHCPWYNSNLAHQGERQQETAMRTLEPLLNKHKVAIIISGHVHAYERSHPVVDHELSVDAPMYLVVGGAGNREGHAADFYPKPDWSAFRDGSAYGSGRLSIRNSALALWEWTSTDEGSG-VHDVAWINNPY 441
            DL + DR +TPW+I + HCPWYNSN AHQ E Q      ++E ++   + A++ISGHVHAYER+HPV        AP+Y+V+G  GNREGHA   Y  P WSA RD  A+G GRL++ N+  A WEW    +G+  + D +WI NPY
Sbjct:  302 DLAALDRSVTPWLIVITHCPWYNSNFAHQLESQAVAMKESMEGMIADARAALVISGHVHAYERTHPVRGWARRDGAPVYIVIGDGGNREGHARGLYAPPHWSAARDDGAFGHGRLAVANATHARWEWRRNRDGAAQLGDASWIVNPY 448          
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Match: A0A482RNP1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNP1_9ARCH)

HSP 1 Score: 149 bits (375), Expect = 4.240e-36
Identity = 62/134 (46.27%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 QDLESTDRDLTPWVITMFHCPWYNSNLAHQGERQQETAMRTLEPLLNKHKVAIIISGHVHAYERSHPVVDHELSVDAPMYLVVGGAGNREGHAADFYPKPDWSAFRDGSAYGSGRLSIRNSALALWEWTSTDEG 402
            QDL+  +R++TPWVI + HCPWYNSN AH GE Q      ++E +  K++V I+ +GHVHAYER++PV  +E   D  +Y+ +G  GNREGHA  +Y +P WSA+R+G+ YG G LS+ +     W W    +G
Sbjct:  231 QDLQGVNREVTPWVIVVMHCPWYNSNQAHYGELQAVLMRESMEEVFYKNRVNIVFTGHVHAYERTYPVFRNETRSDGVVYVTIGDGGNREGHANTYYEQPSWSAYRNGTQYGHGELSLWSRDKLTWRWVRNVDG 364          
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Match: A0A7S2CG88_9STRA (Purple acid phosphatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG88_9STRA)

HSP 1 Score: 149 bits (376), Expect = 5.250e-36
Identity = 73/149 (48.99%), Postives = 99/149 (66.44%), Query Frame = 1
Query:    4 DLESTDRDLTPWVITMFHCPWYNSNLAHQGERQQETAMRTLEPLLNKHKVAIIISGHVHAYERSHPVV-DHELSVDAPM-YLVVGGAGNREGHAADFY-PKPDWSAFRDGSAYGSGRLSIRNSALALWEWT-STDEGSGVHDVAWINNP 438
            DL + +R  TPWV  +FHCPWYNS+  HQ E Q  +    LEP+   ++V  + +GHVHAYER+HP+V D  + V   + Y+VVG  GNREGHA D+  P PDWSA+R+GSA+G GRL++ N+++ALWEW    D  S   D  ++ NP
Sbjct:  264 DLSAVNRVKTPWVFVLFHCPWYNSDDDHQDEFQAVSMQAALEPVFLNYRVNAVFTGHVHAYERTHPLVLDGVVDVSRGIVYVVVGDGGNREGHADDYNTPPPDWSAYRNGSAFGHGRLTLYNASVALWEWRRDIDPVSVTQDSTFLLNP 412          
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Match: A0A812RG62_9DINO (Purple acid phosphatase n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RG62_9DINO)

HSP 1 Score: 152 bits (383), Expect = 6.650e-36
Identity = 71/129 (55.04%), Postives = 86/129 (66.67%), Query Frame = 1
Query:   22 RDLTPWVITMFHCPWYNSNLAHQGERQQETAMRTL---EPLLNKHKVAIIISGHVHAYERSHPVVDHELSVDAPMYLVVGGAGNREGHAADFYPKPDWSAFRDGSAYGSGRLSIRNSALALWEWTSTDE 399
            R  TPW+I M HCP+Y+SN AH  ERQ  T MR +   E LL KH  A++ISGHVHAYER+HPV  +     AP Y+VVG  GNREGHA D+ P+P WSAFR+G  +G GRL I N     WEW + D+
Sbjct:  326 RSSTPWLIVMMHCPFYSSNAAHHEERQT-TLMRDIHGFEDLLQKHAAAVVISGHVHAYERTHPVYRNVTKPGAPTYIVVGDGGNREGHAKDYLPQPSWSAFRNGLTFGHGRLVIANKTHMQWEWWTNDD 453          
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Match: A0A812QP08_SYMMI (Purple acid phosphatase n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812QP08_SYMMI)

HSP 1 Score: 149 bits (377), Expect = 4.010e-35
Identity = 81/193 (41.97%), Postives = 101/193 (52.33%), Query Frame = 1
Query:   22 RDLTPWVITMFHCPWYNSNLAHQGERQQETAMRT---LEPLLNKHKVAIIISGHVHAYERSHPVVDHELSVDAPMYLVVGGAGNREGHAADFYPKPDWSAFRDGSAYGSGRLSIRNSALALWEWTSTD-------------------EGSGV-----------------HDVAWINNPYPNAEPRRASITGAA 483
            R  TPW+I M HCP+Y+SN+AHQ E  Q   MR     E LL+ H  A++ISGHVHAYER+HPV  +     AP Y+VVG  GNREGHA D+ P+P WSAFR+G  +G GRLSI N    LW W + D                   E +G                  +D  WI+NPY +  P R     A+
Sbjct:  321 RAATPWLIVMMHCPFYSSNVAHQSE-SQAIEMRDAHGFEDLLHAHAAAVVISGHVHAYERTHPVYKNVTQPGAPTYIVVGDGGNREGHAKDYMPQPGWSAFRNGLDFGHGRLSIVNQTHMLWAWQTNDATQPPALNKEDAARRAAELEQAGATFNADSAWRMPLAQRSAYDSVWIHNPYRDPPPPRPRSANAS 512          
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Match: A0A1Q9EB14_SYMMI (Purple acid phosphatase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EB14_SYMMI)

HSP 1 Score: 149 bits (377), Expect = 3.980e-34
Identity = 81/193 (41.97%), Postives = 101/193 (52.33%), Query Frame = 1
Query:   22 RDLTPWVITMFHCPWYNSNLAHQGERQQETAMRT---LEPLLNKHKVAIIISGHVHAYERSHPVVDHELSVDAPMYLVVGGAGNREGHAADFYPKPDWSAFRDGSAYGSGRLSIRNSALALWEWTSTD-------------------EGSGV-----------------HDVAWINNPYPNAEPRRASITGAA 483
            R  TPW+I M HCP+Y+SN+AHQ E  Q   MR     E LL+ H  A++ISGHVHAYER+HPV  +     AP Y+VVG  GNREGHA D+ P+P WSAFR+G  +G GRLSI N    LW W + D                   E +G                  +D  WI+NPY +  P R     A+
Sbjct:  321 RAATPWLIVMMHCPFYSSNVAHQSE-SQAIEMRDAHGFEDLLHAHAAAVVISGHVHAYERTHPVYKNVTQPGAPTYIVVGDGGNREGHAKDYMPQPGWSAFRNGLDFGHGRLSIVNQTHMLWAWQTNDATQPPALNKEDAARRAAELEQAGATFNADSAWRMPLAQRSAYDSVWIHNPYRDPPPPRPRSANAS 512          
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Match: A0A0K9PN95_ZOSMR (Purple acid phosphatase n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PN95_ZOSMR)

HSP 1 Score: 142 bits (357), Expect = 4.150e-33
Identity = 69/146 (47.26%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    4 DLESTDRDLTPWVITMFHCPWYNSNLAHQGERQQETAMRTLEPLLNKHKVAIIISGHVHAYERSHPVVDHELSVDAPMYLVVGGAGNREGHAADF-YPKPDWSAFRDGSAYGSGRLSIRNSALALWEWTSTDEGSGV-HDVAWINN 435
            DL + DR  TPW++ +FH PWYNSN AHQGE  +   M T+EPLL    V ++ISGHVHAYER+  VV+H       +++ +G  GN+EG A  + +PKP+WS FR+ S +G G L I NS  A W W   D+   V  D  WIN+
Sbjct:  285 DLANVDRQRTPWLLVLFHIPWYNSNFAHQGEGDE--MMATIEPLLYNSGVDLMISGHVHAYERTERVVNHRKDPCGAVHITIGDGGNKEGLAQRYRHPKPNWSVFREAS-FGHGELKIVNSTHAFWTWHRNDDDQAVLSDKVWINS 427          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7813.15838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI4_ECTSI6.180e-7475.68Purple acid phosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KE14_9PHAE1.650e-5456.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWJ2_ECTSI3.590e-5057.24Purple acid phosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A835YVM8_9STRA2.190e-4048.98Purple acid phosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A482RNP1_9ARCH4.240e-3646.27Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2CG88_9STRA5.250e-3648.99Purple acid phosphatase n=1 Tax=Dictyocha speculum... [more]
A0A812RG62_9DINO6.650e-3655.04Purple acid phosphatase n=1 Tax=Symbiodinium natan... [more]
A0A812QP08_SYMMI4.010e-3541.97Purple acid phosphatase n=4 Tax=Symbiodinium TaxID... [more]
A0A1Q9EB14_SYMMI3.980e-3441.97Purple acid phosphatase n=1 Tax=Symbiodinium micro... [more]
A0A0K9PN95_ZOSMR4.150e-3347.26Purple acid phosphatase n=1 Tax=Zostera marina Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7813contigH-paniculata_contig7813:7125..10393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.6
Seed ortholog evalue1.8e-58
Seed eggNOG ortholog2880.D8LBI4
KEGG koko:K22390
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acid phosphatase activity
EggNOG OGsCOG1409@1,KOG1378@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons4
Model size1726
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7813.15838.1prot_H-paniculata_contig7813.15838.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7813 8116..10345 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930971.4683907-UTR-H-paniculata_contig7813:7124..81151622930971.4683907-UTR-H-paniculata_contig7813:7124..8115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7813 7125..8115 -
1691481533.0595715-UTR-H-paniculata_contig7813:7124..81151691481533.0595715-UTR-H-paniculata_contig7813:7124..8115Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7813 7125..8115 -
1622930971.5687065-UTR-H-paniculata_contig7813:10345..103931622930971.5687065-UTR-H-paniculata_contig7813:10345..10393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7813 10346..10393 -
1691481533.105538-UTR-H-paniculata_contig7813:10345..103931691481533.105538-UTR-H-paniculata_contig7813:10345..10393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7813 10346..10393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930971.484447-CDS-H-paniculata_contig7813:8115..84631622930971.484447-CDS-H-paniculata_contig7813:8115..8463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7813 8116..8463 -
1691481533.0694635-CDS-H-paniculata_contig7813:8115..84631691481533.0694635-CDS-H-paniculata_contig7813:8115..8463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7813 8116..8463 -
1622930971.5061207-CDS-H-paniculata_contig7813:8846..89531622930971.5061207-CDS-H-paniculata_contig7813:8846..8953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7813 8847..8953 -
1691481533.0775034-CDS-H-paniculata_contig7813:8846..89531691481533.0775034-CDS-H-paniculata_contig7813:8846..8953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7813 8847..8953 -
1622930971.5304425-CDS-H-paniculata_contig7813:9506..96051622930971.5304425-CDS-H-paniculata_contig7813:9506..9605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7813 9507..9605 -
1691481533.0862324-CDS-H-paniculata_contig7813:9506..96051691481533.0862324-CDS-H-paniculata_contig7813:9506..9605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7813 9507..9605 -
1622930971.5528562-CDS-H-paniculata_contig7813:10212..103451622930971.5528562-CDS-H-paniculata_contig7813:10212..10345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7813 10213..10345 -
1691481533.0958881-CDS-H-paniculata_contig7813:10212..103451691481533.0958881-CDS-H-paniculata_contig7813:10212..10345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7813 10213..10345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7813.15838.1

>prot_H-paniculata_contig7813.15838.1 ID=prot_H-paniculata_contig7813.15838.1|Name=mRNA_H-paniculata_contig7813.15838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=229bp
MFHCPWYNSNLAHQGERQQETAMRTLEPLLNKHKVAIIISGHVHAYERSH
PVVDHELSVDAPMYLVVGGAGNREGHAADFYPKPDWSAFRDGSAYGSGRL
SIRNSALALWEWTSTDEGSGVHDVAWINNPYPNAEPRRASITGAAPGEPP
FPGILDADDGPNRHGIASVHVSSKMQKGNEEQEVVLGAGADDEEEELRED
GTDRHDAHGRMGKLLRIPGLSDRRHRMA*
back to top

mRNA from alignment at H-paniculata_contig7813:7125..10393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7813.15838.1 ID=mRNA_H-paniculata_contig7813.15838.1|Name=mRNA_H-paniculata_contig7813.15838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3269bp|location=Sequence derived from alignment at H-paniculata_contig7813:7125..10393- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACCTGGAGTCGACGGACCGAGATCTGACGCCGTGGGTAATCACGAT GTTCCACTGCCCGTGGTACAACTCGAACCTGGCGCACCAGGGCGAGCGGC AGCAAGAGACCGCCATGCGCACTTTGGAGCCGTTGCTGAACAAGCACAAG GTGGCCATCATCATTTCAGGACATGTGCACGGTGAGGGCAGGGACAACAA ACAAACAGACAAAATGTCTATCGCGCTGAATTAAGTGTGCTTTATTGTAT TTTGCACACAGTTGCTTTTTTCTCGAGCGCAGGGTGTGTAAATGGAATTG GGACGTTTTTTTTTTTTCTTGCTCTTCGTTTAATGCTACAGACCTTGCGT GAGCCACTGTTGATTTTTCTGTATCGTTTTCCATTATGAAGGAGGATTAG GTACGTCTAGCAATTGTATGCTTTCGTTATCAGGGTGTGTGGTTAGTTTG GCGTCCATTTCGCTCACGGACGCTCCGCGATTTTATGGTATTGCAGAAAT GTAAGGAACCGCCGAAATATGAGCAAACATTCACTGGTTGGACAACAAGT GTATATCGACATGGCATGTGCACAACAAAAGAGGAACTGACTGAACCGTG ACATCATAACAACGTACGTAGTAGTATGCACCATGCTAGCTGTACCCCCG CATAGTGGTCACTTCGAAATCAATAAAGAGCCATCGCACACCCTGCTTAC TGTTTGCTCATTATGTTGTTAACTCGCTTCCTGTGGTTTTCCTCTCCCCT CTCCCGCCCGATTCCCACTGCTTTTCGTGGTGTCACAGCGTACGAGCGAT CTCACCCTGTGGTCGATCACGAGCTCTCCGTAGATGCCCCAATGTATCTC GTTGTAGGAGGTGCAGGGAACCGTGAGGGACACGCAGGTAAAGATGGTCG GCCGTGCCCTCAAAGCGCTAAGTGTGCGTCTGCGTACTCTGCTGTACATG ATCTTGTACGCACGTTCGTATTTGAGGGTAGATGATCCATCATTATTCAC TAACATATGTAAAGGTGGTTTGGGCAAAGAGAGTTCCAGCTGATGGTGCG ATGTGGTGTGTGATGGATGTTGTGCTATGGATTCGCGTTAAGTATTTTCA AGTCTTGGGGAAGGGGCGGGTTTGTTTTGGCGAAGGGAATTTCACCGTGA CGGAGACGCACTCCGGTGTGTTGTTTTTTGGGGAGAATGGAGATCGAACC TCGTGTGATCGTGTGTGTTCGAACGCGCGTGGATGTCGAGACAGCCCTTT TGGTGTACATTGTGACAAGGATTGAAGTGCAATACTCGGACGTTGTATCT ATTGCGAGACGTGTCGATGGTGGTGCTCTCGCTCTGAATATGCTGTAAAC AGTCTCCATGATTTACTCTATTTTTACGCGCTTGAATTGTGTTCCGGTCG ACTGTGTGTCCCCATGCTCTGGCGTCCGTTGTCTTTCTAGCTGATTTTTA CCCCAAGCCTGACTGGAGTGCATTCCGCGATGGATCGGCGTACGGCTCCG GGCGTCTCTCTATCCGGAACTCGGCGCTTGCTTTGTGGGAGTGGACGGTG AGGTCATTTGTTTTTGTGTCGCAAGTAGTTGGTGGTGGATGTCTTTCTTG TGTTGTCTGTATATTGCACCTTACTGCTGAAGTTTCCGCTTGAAAAACGT GTACAAGGCTGTGTTATCCGCTCAACGCTTGATTATTTATGTGTTATGTC TTTTACCATTTTAAAACGACGAGGGAACAACATCTCTTGAACTCTATTGG TGTGGTACGACGCAGTGTTCACTCTATCTCTGTTACGCTGGGGAACGATT ACATTTGTTGAGGTAATCCCCCCAGCTCTTATTCCTCTCTGCGGTGAATG ATGAATTTAGCGCCAATTCCTTGATTATTCCCACCTAAAACAACAACCCC GTCCAACTTTGCCTGCACTAAATCTCCCAGTCCACTGACGAGGGCTCAGG CGTGCACGACGTTGCTTGGATTAACAACCCCTACCCGAACGCGGAGCCGC GCCGGGCATCGATCACCGGGGCTGCGCCAGGGGAACCTCCATTCCCCGGC ATCCTTGACGCAGACGACGGCCCCAACCGCCATGGTATCGCTAGTGTTCA CGTATCGAGTAAGATGCAAAAAGGGAATGAAGAGCAAGAAGTCGTTCTTG GAGCAGGTGCTGACGATGAGGAGGAGGAACTTCGGGAGGACGGTACTGAT AGGCATGACGCTCATGGCAGGATGGGAAAACTGTTGCGCATCCCCGGCTT GTCGGATCGACGCCATCGCATGGCATGATTCAACCGCTTGGTTTCGGGGG AGGAGAAAAATTGATATGGTACTGCCAAGGGGCGAGACGAAGCTAGACGC AGGCAGAGGTCGAAAGGTCTTCGAACGAAAGGCAGCTTCGTTTGTGTTGT GCCCCTGGGTGTGTTTGGAGGTTTGTGACTGTATCTTGTTTTTAACGATA TATCAGCGAATTATTTGACTCGGGTATGTGCAAAGGAATCGACGGTAAAA TATCGTTGCTGGTTGGATGGACATTGTTTGGTTTTGAGTCTTTTTCAACA CCGACACGTCTCATACGCGTCGCTCCGTTCCGCCTACTTGATTTTTTTGT AGGTTATAGCGTGAATTTTACGTTGTTCGAGATAGTGGAACAATCAATCG GACGTTATTTATAGAAAAGATGTGTGTGATGTATTAAGGGGAGATTTTGC TATTTGTTTGAATTAGGAAGCTGGTGCGCGGTGAGCTAGCTGCTCATCGA GCAATTTTGACTTAGTTCGTGTGGTGTGAGATGTGATATGGTAGGTAGTT GATATGCCACACAGTATTCATGTGCGTGGTTTGTCCCAAACCATGGATTG TACACAAACAACCCCGCTTATGACCTCGAGAGGTTGTGTCAACAGTTGAG CGGTGTTGTGCTGCCCTGTAATACATTCTTCGCCAAAAGCGTCGATAGTC CATTCGAGAGTGGTGTAGGCGCACCTACACCCTGCGACTTGCATCCTGCG ATACGTACTGGGCGAAAAAAATGTTCCGACATGACCCATGTACACATCTT TTCCCCTATCCACATTTCTCATCTGCACTCGTTTCGAGGAAGGGTTTCTC TCCCTAGGTTTATGCAAGGTGGACATCGACAGGTTTCGGCTCCTTGGAAG CAGGTTAAAGATGGATTGATAGAGTGGGATGGAGCGCGGAGTATTCAAGT ATGCCAGCGCAGACAGGGTTGAACAATGACAGATAAAATACAGTCTGTTA GAGTACAAAGCATACCGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7813:7125..10393-

>mRNA_H-paniculata_contig7813.15838.1 ID=mRNA_H-paniculata_contig7813.15838.1|Name=mRNA_H-paniculata_contig7813.15838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig7813:7125..10393- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCACTGCCCGTGGTACAACTCGAACCTGGCGCACCAGGGCGAGCG
GCAGCAAGAGACCGCCATGCGCACTTTGGAGCCGTTGCTGAACAAGCACA
AGGTGGCCATCATCATTTCAGGACATGTGCACGATGTTCCACTGCCCGTG
GTACAACTCGAACCTGGCGCACCAGGGCGAGCGGCAGCAAGAGACCGCCA
TGCGCACTTTGGAGCCGTTGCTGAACAAGCACAAGGTGGCCATCATCATT
TCAGGACATGTGCACGCGTACGAGCGATCTCACCCTGTGGTCGATCACGA
GCTCTCCGTAGATGCCCCAATGTATCTCGTTGTAGGAGGTGCAGGGAACC
GTGAGGGACACGCAGCGTACGAGCGATCTCACCCTGTGGTCGATCACGAG
CTCTCCGTAGATGCCCCAATGTATCTCGTTGTAGGAGGTGCAGGGAACCG
TGAGGGACACGCAGCTGATTTTTACCCCAAGCCTGACTGGAGTGCATTCC
GCGATGGATCGGCGTACGGCTCCGGGCGTCTCTCTATCCGGAACTCGGCG
CTTGCTTTGTGGGAGTGGACGCTGATTTTTACCCCAAGCCTGACTGGAGT
GCATTCCGCGATGGATCGGCGTACGGCTCCGGGCGTCTCTCTATCCGGAA
CTCGGCGCTTGCTTTGTGGGAGTGGACGTCCACTGACGAGGGCTCAGGCG
TGCACGACGTTGCTTGGATTAACAACCCCTACCCGAACGCGGAGCCGCGC
CGGGCATCGATCACCGGGGCTGCGCCAGGGGAACCTCCATTCCCCGGCAT
CCTTGACGCAGACGACGGCCCCAACCGCCATGGTATCGCTAGTGTTCACG
TATCGAGTAAGATGCAAAAAGGGAATGAAGAGCAAGAAGTCGTTCTTGGA
GCAGGTGCTGACGATGAGGAGGAGGAACTTCGGGAGGACGGTACTGATAG
GCATGACGCTCATGGCAGGATGGGAAAACTGTTGCGCATCCCCGGCTTGT
CGGATCGACGCCATCGCATGGCATGATCCACTGACGAGGGCTCAGGCGTG
CACGACGTTGCTTGGATTAACAACCCCTACCCGAACGCGGAGCCGCGCCG
GGCATCGATCACCGGGGCTGCGCCAGGGGAACCTCCATTCCCCGGCATCC
TTGACGCAGACGACGGCCCCAACCGCCATGGTATCGCTAGTGTTCACGTA
TCGAGTAAGATGCAAAAAGGGAATGAAGAGCAAGAAGTCGTTCTTGGAGC
AGGTGCTGACGATGAGGAGGAGGAACTTCGGGAGGACGGTACTGATAGGC
ATGACGCTCATGGCAGGATGGGAAAACTGTTGCGCATCCCCGGCTTGTCG
GATCGACGCCATCGCATGGCATGA
back to top