mRNA_H-paniculata_contig7810.15834.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7810.15834.1
Unique NamemRNA_H-paniculata_contig7810.15834.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7810.15834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7810contigH-paniculata_contig7810:9479..10186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size628
Cds size627
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.7049456-CDS-H-paniculata_contig7810:9478..98441622930970.7049456-CDS-H-paniculata_contig7810:9478..9844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7810 9479..9844 -
1691481532.785239-CDS-H-paniculata_contig7810:9478..98441691481532.785239-CDS-H-paniculata_contig7810:9478..9844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7810 9479..9844 -
1622930970.7280097-CDS-H-paniculata_contig7810:9925..101861622930970.7280097-CDS-H-paniculata_contig7810:9925..10186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7810 9926..10186 -
1691481532.7967284-CDS-H-paniculata_contig7810:9925..101861691481532.7967284-CDS-H-paniculata_contig7810:9925..10186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7810 9926..10186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7810.15834.1prot_H-paniculata_contig7810.15834.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7810 9479..10186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7810.15834.1

>prot_H-paniculata_contig7810.15834.1 ID=prot_H-paniculata_contig7810.15834.1|Name=mRNA_H-paniculata_contig7810.15834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
MTTRIEERKDRLEATSAAPATAFSPRVTRSKSRKEEGAGKTKPAIVPWSV
ALDFVKTMHDSNVFAGVDWVQSEASDPTGSLGFPGSLLETDSEAHAADAQ
AGAGAVEVEVESAAATADAVVETGAQTTAYEPTAAGRPKKRPNNDRQKPT
GRVGSRPGALPTKTQPEKAPLDFSKRRFPELPAHPEPGSRSSLHDCPSKS
DPPSGSGRV
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mRNA from alignment at H-paniculata_contig7810:9479..10186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7810.15834.1 ID=mRNA_H-paniculata_contig7810.15834.1|Name=mRNA_H-paniculata_contig7810.15834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=708bp|location=Sequence derived from alignment at H-paniculata_contig7810:9479..10186- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACAAGGATCGAAGAACGCAAAGACCGACTGGAGGCCACGAGCGC
AGCGCCGGCGACTGCTTTTTCTCCGCGCGTTACACGCAGCAAGTCCCGCA
AGGAGGAGGGGGCAGGGAAAACCAAACCAGCTATAGTGCCTTGGTCCGTC
GCGCTGGACTTTGTGAAGACAATGCACGACTCAAACGTTTTTGCTGGGGT
GGACTGGGTGCAGTCCGAAGCAAGCGACCCCACGGGAAGCCTTGGCTTCC
CAGGTTCGCTAGCTTGGATCAAGGCGCCGAGCATGCCGGCAAAGCTTTTA
GGTACAATGGTCTCTTGCATGGAGAGAAACTTCCGTTCGAAGCTTGAGAC
AGATTCCGAGGCCCATGCCGCCGACGCACAGGCGGGGGCGGGGGCGGTGG
AAGTGGAAGTGGAATCGGCGGCTGCAACGGCAGACGCGGTGGTAGAGACC
GGGGCCCAGACCACAGCGTATGAACCTACGGCAGCGGGGAGACCGAAGAA
GAGGCCGAACAACGACAGACAGAAGCCTACCGGCAGGGTGGGGAGCAGGC
CAGGCGCTCTTCCCACCAAAACTCAGCCCGAGAAGGCGCCGTTAGATTTT
TCTAAACGACGGTTCCCCGAGCTACCCGCGCACCCAGAGCCGGGATCACG
GTCGTCTCTTCACGACTGCCCATCGAAGAGCGATCCTCCATCGGGGTCCG
GGCGGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig7810:9479..10186-

>mRNA_H-paniculata_contig7810.15834.1 ID=mRNA_H-paniculata_contig7810.15834.1|Name=mRNA_H-paniculata_contig7810.15834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at H-paniculata_contig7810:9479..10186- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACAAGGATCGAAGAACGCAAAGACCGACTGGAGGCCACGAGCGC
AGCGCCGGCGACTGCTTTTTCTCCGCGCGTTACACGCAGCAAGTCCCGCA
AGGAGGAGGGGGCAGGGAAAACCAAACCAGCTATAGTGCCTTGGTCCGTC
GCGCTGGACTTTGTGAAGACAATGCACGACTCAAACGTTTTTGCTGGGGT
GGACTGGGTGCAGTCCGAAGCAAGCGACCCCACGGGAAGCCTTGGCTTCC
CAGGTTCGCTAATGACAACAAGGATCGAAGAACGCAAAGACCGACTGGAG
GCCACGAGCGCAGCGCCGGCGACTGCTTTTTCTCCGCGCGTTACACGCAG
CAAGTCCCGCAAGGAGGAGGGGGCAGGGAAAACCAAACCAGCTATAGTGC
CTTGGTCCGTCGCGCTGGACTTTGTGAAGACAATGCACGACTCAAACGTT
TTTGCTGGGGTGGACTGGGTGCAGTCCGAAGCAAGCGACCCCACGGGAAG
CCTTGGCTTCCCAGGTTCGCTACTTGAGACAGATTCCGAGGCCCATGCCG
CCGACGCACAGGCGGGGGCGGGGGCGGTGGAAGTGGAAGTGGAATCGGCG
GCTGCAACGGCAGACGCGGTGGTAGAGACCGGGGCCCAGACCACAGCGTA
TGAACCTACGGCAGCGGGGAGACCGAAGAAGAGGCCGAACAACGACAGAC
AGAAGCCTACCGGCAGGGTGGGGAGCAGGCCAGGCGCTCTTCCCACCAAA
ACTCAGCCCGAGAAGGCGCCGTTAGATTTTTCTAAACGACGGTTCCCCGA
GCTACCCGCGCACCCAGAGCCGGGATCACGGTCGTCTCTTCACGACTGCC
CATCGAAGAGCGATCCTCCATCGGGGTCCGGGCGGGTCCTTGAGACAGAT
TCCGAGGCCCATGCCGCCGACGCACAGGCGGGGGCGGGGGCGGTGGAAGT
GGAAGTGGAATCGGCGGCTGCAACGGCAGACGCGGTGGTAGAGACCGGGG
CCCAGACCACAGCGTATGAACCTACGGCAGCGGGGAGACCGAAGAAGAGG
CCGAACAACGACAGACAGAAGCCTACCGGCAGGGTGGGGAGCAGGCCAGG
CGCTCTTCCCACCAAAACTCAGCCCGAGAAGGCGCCGTTAGATTTTTCTA
AACGACGGTTCCCCGAGCTACCCGCGCACCCAGAGCCGGGATCACGGTCG
TCTCTTCACGACTGCCCATCGAAGAGCGATCCTCCATCGGGGTCCGGGCG
GGTC
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