mRNA_H-paniculata_contig7806.15827.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7806.15827.1
Unique NamemRNA_H-paniculata_contig7806.15827.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7806.15827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7806contigH-paniculata_contig7806:3990..4694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size685
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7806.15827.1prot_H-paniculata_contig7806.15827.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7806 4031..4410 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.049868-UTR-H-paniculata_contig7806:3989..40301622930970.049868-UTR-H-paniculata_contig7806:3989..4030Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7806 3990..4030 -
1691481532.5383124-UTR-H-paniculata_contig7806:3989..40301691481532.5383124-UTR-H-paniculata_contig7806:3989..4030Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7806 3990..4030 -
1622930970.100508-UTR-H-paniculata_contig7806:4410..46941622930970.100508-UTR-H-paniculata_contig7806:4410..4694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7806 4411..4694 -
1691481532.570671-UTR-H-paniculata_contig7806:4410..46941691481532.570671-UTR-H-paniculata_contig7806:4410..4694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7806 4411..4694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.0634167-CDS-H-paniculata_contig7806:4030..42221622930970.0634167-CDS-H-paniculata_contig7806:4030..4222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7806 4031..4222 -
1691481532.5500443-CDS-H-paniculata_contig7806:4030..42221691481532.5500443-CDS-H-paniculata_contig7806:4030..4222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7806 4031..4222 -
1622930970.0823257-CDS-H-paniculata_contig7806:4242..44101622930970.0823257-CDS-H-paniculata_contig7806:4242..4410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7806 4243..4410 -
1691481532.5611615-CDS-H-paniculata_contig7806:4242..44101691481532.5611615-CDS-H-paniculata_contig7806:4242..4410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7806 4243..4410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7806.15827.1

>prot_H-paniculata_contig7806.15827.1 ID=prot_H-paniculata_contig7806.15827.1|Name=mRNA_H-paniculata_contig7806.15827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MVQLFSYTRPKVVWGIGRQLQNSPLTLAQCLSQAVSHQKVALKRTVRPTQ
LDLSRSADGLSAKDAGFAGVVMLVAKLAPQMVWGLHEGRTALSEVLRCCV
AIGGRFVHHWAQRTHSKWS*
back to top

mRNA from alignment at H-paniculata_contig7806:3990..4694-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7806.15827.1 ID=mRNA_H-paniculata_contig7806.15827.1|Name=mRNA_H-paniculata_contig7806.15827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=705bp|location=Sequence derived from alignment at H-paniculata_contig7806:3990..4694- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGATGCGGTCCCTCGCTGCTAGGTCGAGGATGAAGTCTACCCTGTTCT
TTCTGTGCGTCAGCGACAGAGATGAGGTAATGCGCCGTTTCACCCTCGTG
GCGCCCATCTCTTTGGGCATGAGCTGCCGGCTACGAGACCAACTTCCGCT
AGCTTGGCAGGCAGTTGATCGAGGGTCAGGGTTCGATTCGCGGCGTTGAC
CCTTCGAATCGTGGTGTGCTTTGTCGGTGTGAATTCCGACAGCCGCTCGC
TTCTTGACGCTGACCTCAGCGAAAGGGTGTTACAATGGTCCAGTTGTTCT
CGTACACGCGCCCAAAAGTTGTCTGGGGTATTGGTCGCCAACTCCAAAAT
TCTCCGCTAACTCTGGCCCAATGCCTTTCGCAAGCCGTTTCTCACCAGAA
GGTAGCGCTAAAGCGTACCGTACGGCCAACGCAATTAGACCTTTCTCGCT
CAGCTCGCAATTTCTACCCCAGGCTGATGGACTCTCGGCGAAAGATGCCG
GATTCGCTGGAGTGGTAATGTTGGTCGCGAAACTCGCGCCGCAGATGGTC
TGGGGGTTGCACGAGGGTCGTACAGCTCTTAGCGAGGTGCTGAGATGTTG
TGTGGCGATAGGGGGGCGCTTTGTCCACCACTGGGCGCAGCGCACCCATT
CAAAATGGAGCTGAAAAGGTTCATTTTTCAAGTTCCCCTTCTCGCTAATT
TGTCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7806:3990..4694-

>mRNA_H-paniculata_contig7806.15827.1 ID=mRNA_H-paniculata_contig7806.15827.1|Name=mRNA_H-paniculata_contig7806.15827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig7806:3990..4694- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCAGTTGTTCTCGTACACGCGCCCAAAAGTTGTCTGGGGTATTGG
TCGCCAACTCCAAAATTCTCCGCTAACTCTGGCCCAATGCCTTTCGCAAG
CCGTTTCTCACCAGAAGGTAGCGCTAAAGCGTACCGTACGGCCAACGCAA
TTAGACCTTTCTCGCTCAATGGTCCAGTTGTTCTCGTACACGCGCCCAAA
AGTTGTCTGGGGTATTGGTCGCCAACTCCAAAATTCTCCGCTAACTCTGG
CCCAATGCCTTTCGCAAGCCGTTTCTCACCAGAAGGTAGCGCTAAAGCGT
ACCGTACGGCCAACGCAATTAGACCTTTCTCGCTCAGCTGATGGACTCTC
GGCGAAAGATGCCGGATTCGCTGGAGTGGTAATGTTGGTCGCGAAACTCG
CGCCGCAGATGGTCTGGGGGTTGCACGAGGGTCGTACAGCTCTTAGCGAG
GTGCTGAGATGTTGTGTGGCGATAGGGGGGCGCTTTGTCCACCACTGGGC
GCAGCGCACCCATTCAAAATGGAGCTGAGCTGATGGACTCTCGGCGAAAG
ATGCCGGATTCGCTGGAGTGGTAATGTTGGTCGCGAAACTCGCGCCGCAG
ATGGTCTGGGGGTTGCACGAGGGTCGTACAGCTCTTAGCGAGGTGCTGAG
ATGTTGTGTGGCGATAGGGGGGCGCTTTGTCCACCACTGGGCGCAGCGCA
CCCATTCAAAATGGAGCTGA
back to top