prot_H-paniculata_contig78021.15826.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig78021.15826.1
Unique Name	prot_H-paniculata_contig78021.15826.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	108

Homology

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BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 2.610e-50
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 0

Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAKGGFRYACKFTDAFSRMKEVYLLKAKSESV 108
            VN+NTWHR L HLNFRSM+LLRKKE NGVDF+DSM+PCDICAISKSRQLAHP+KT R+TTAPMQLVYTDN G+ TP AKGGF Y  KFTDA+S MKE+YLLKA SE+V
Sbjct:  306 VNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETV 413

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BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.110e-46
Identity = 83/108 (76.85%), Postives = 93/108 (86.11%), Query Frame = 0

Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAKGGFRYACKFTDAFSRMKEVYLLKAKSESV 108
            VN+NT HRRLGHLNFRSM LLRKKE N VDF+DSM+PCDICAISKS QLAHPKKT+R+TTAPM LVYTD  G+ TP AKGGF Y   F DA+SR+KE+YLLKAKSE+V
Sbjct:  104 VNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETV 211

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BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.710e-39
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 0

Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 107
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149

[Close]

BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.070e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 0

Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 107
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149

[Close]

BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.700e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 0

Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 107
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:  416 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 525

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BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.840e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 0

Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 107
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149

[Close]

BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 6.180e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 0

Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 107
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149

[Close]

BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 6.420e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 0

Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 107
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149

[Close]

BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 6.440e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 0

Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 107
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149

[Close]

BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.990e-35
Identity = 63/110 (57.27%), Postives = 82/110 (74.55%), Query Frame = 0

Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 107
            V ++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q +HPK++T + + P QLV  DN G + PPAK   G F YACK TD  ++MKEVYLL+ KS+S
Sbjct:   40 VTADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLLRKKSDS 149

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JYD3_9PHAE	2.610e-50	79.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JT61_9PHAE	1.110e-46	76.85	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KZ34_9PHAE	5.710e-39	57.27	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KCM0_9PHAE	2.070e-36	57.27	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5KT84_9PHAE	4.700e-36	57.27	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K500_9PHAE	5.840e-36	57.27	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K1R7_9PHAE	6.180e-36	57.27	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JJR8_9PHAE	6.420e-36	57.27	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	6.440e-36	57.27	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JFQ6_9PHAE	2.990e-35	57.27	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 3..46 e-value: 5.9E-10 score: 38.9
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 4..106
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 4..106

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig78021	contig	H-paniculata_contig78021:16..339 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig78021.15826.1	mRNA_H-paniculata_contig78021.15826.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig78021 16..339 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig78021.15826.1 ID=prot_H-paniculata_contig78021.15826.1|Name=mRNA_H-paniculata_contig78021.15826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLA
HPKKTTRKTTAPMQLVYTDNRGQITPPAKGGFRYACKFTDAFSRMKEVYL
LKAKSESV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom
IPR039537	Retrotran_Ty1/copia-like