mRNA_H-paniculata_contig78021.15826.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig78021.15826.1
Unique NamemRNA_H-paniculata_contig78021.15826.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 2.610e-50
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAKGGFRYACKFTDAFSRMKEVYLLKAKSESV 324
            VN+NTWHR L HLNFRSM+LLRKKE NGVDF+DSM+PCDICAISKSRQLAHP+KT R+TTAPMQLVYTDN G+ TP AKGGF Y  KFTDA+S MKE+YLLKA SE+V
Sbjct:  306 VNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETV 413
[Close]
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.110e-46
Identity = 83/108 (76.85%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAKGGFRYACKFTDAFSRMKEVYLLKAKSESV 324
            VN+NT HRRLGHLNFRSM LLRKKE N VDF+DSM+PCDICAISKS QLAHPKKT+R+TTAPM LVYTD  G+ TP AKGGF Y   F DA+SR+KE+YLLKAKSE+V
Sbjct:  104 VNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETV 211
[Close]
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.710e-39
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 321
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149
[Close]
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.070e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 321
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149
[Close]
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.700e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 321
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:  416 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 525
[Close]
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.840e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 321
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149
[Close]
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 6.180e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 321
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149
[Close]
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 6.420e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 321
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149
[Close]
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 6.440e-36
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 321
            V+++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q  HPK++TR+ + P QLV  DN G + PPAK   G F YACK TD +++MKEVYLL+ KS++
Sbjct:   40 VSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDT 149
[Close]
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.990e-35
Identity = 63/110 (57.27%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:    1 VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLAHPKKTTRKTTAPMQLVYTDNRGQITPPAK---GGFRYACKFTDAFSRMKEVYLLKAKSES 321
            V ++TWHRRLGHLN RS+D+LRK  G GVD+ DS+SPC +C I+K +Q +HPK++T + + P QLV  DN G + PPAK   G F YACK TD  ++MKEVYLL+ KS+S
Sbjct:   40 VTADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLLRKKSDS 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig78021.15826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYD3_9PHAE2.610e-5079.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE1.110e-4676.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZ34_9PHAE5.710e-3957.27Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KCM0_9PHAE2.070e-3657.27Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KT84_9PHAE4.700e-3657.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE5.840e-3657.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE6.180e-3657.27Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JJR8_9PHAE6.420e-3657.27Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE6.440e-3657.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JFQ6_9PHAE2.990e-3557.27Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig78021contigH-paniculata_contig78021:16..339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog4081.Solyc11g062200.1.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930969.9986641-CDS-H-paniculata_contig78021:15..3391622930969.9986641-CDS-H-paniculata_contig78021:15..339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78021 16..339 -
1691481532.5246208-CDS-H-paniculata_contig78021:15..3391691481532.5246208-CDS-H-paniculata_contig78021:15..339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78021 16..339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig78021.15826.1prot_H-paniculata_contig78021.15826.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig78021 16..339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig78021.15826.1

>prot_H-paniculata_contig78021.15826.1 ID=prot_H-paniculata_contig78021.15826.1|Name=mRNA_H-paniculata_contig78021.15826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
VNSNTWHRRLGHLNFRSMDLLRKKEGNGVDFADSMSPCDICAISKSRQLA
HPKKTTRKTTAPMQLVYTDNRGQITPPAKGGFRYACKFTDAFSRMKEVYL
LKAKSESV
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mRNA from alignment at H-paniculata_contig78021:16..339-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig78021.15826.1 ID=mRNA_H-paniculata_contig78021.15826.1|Name=mRNA_H-paniculata_contig78021.15826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig78021:16..339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAACTCGAACACTTGGCACAGGAGGCTTGGGCATCTCAACTTCCGGAG
CATGGACCTACTGCGCAAGAAGGAGGGCAATGGAGTAGACTTCGCGGACT
CCATGTCACCTTGCGACATCTGCGCAATCAGCAAGAGCAGGCAGCTAGCG
CACCCGAAGAAGACCACGCGCAAGACGACGGCGCCCATGCAACTGGTATA
CACCGACAACAGAGGGCAGATCACTCCGCCTGCGAAAGGGGGTTTCCGGT
ACGCCTGCAAATTCACCGACGCCTTCTCGCGGATGAAGGAAGTGTACCTG
CTCAAGGCCAAGTCCGAGTCCGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig78021:16..339-

>mRNA_H-paniculata_contig78021.15826.1 ID=mRNA_H-paniculata_contig78021.15826.1|Name=mRNA_H-paniculata_contig78021.15826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig78021:16..339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAACTCGAACACTTGGCACAGGAGGCTTGGGCATCTCAACTTCCGGAG
CATGGACCTACTGCGCAAGAAGGAGGGCAATGGAGTAGACTTCGCGGACT
CCATGTCACCTTGCGACATCTGCGCAATCAGCAAGAGCAGGCAGCTAGCG
CACCCGAAGAAGACCACGCGCAAGACGACGGCGCCCATGCAACTGGTATA
CACCGACAACAGAGGGCAGATCACTCCGCCTGCGAAAGGGGGTTTCCGGT
ACGCCTGCAAATTCACCGACGCCTTCTCGCGGATGAAGGAAGTGTACCTG
CTCAAGGCCAAGTCCGAGTCCGTTGTCAACTCGAACACTTGGCACAGGAG
GCTTGGGCATCTCAACTTCCGGAGCATGGACCTACTGCGCAAGAAGGAGG
GCAATGGAGTAGACTTCGCGGACTCCATGTCACCTTGCGACATCTGCGCA
ATCAGCAAGAGCAGGCAGCTAGCGCACCCGAAGAAGACCACGCGCAAGAC
GACGGCGCCCATGCAACTGGTATACACCGACAACAGAGGGCAGATCACTC
CGCCTGCGAAAGGGGGTTTCCGGTACGCCTGCAAATTCACCGACGCCTTC
TCGCGGATGAAGGAAGTGTACCTGCTCAAGGCCAAGTCCGAGTCCGTT
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