mRNA_H-paniculata_contig78.15822.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig78.15822.1 vs. uniprot
Match: D8LMT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT9_ECTSI) HSP 1 Score: 213 bits (542), Expect = 1.430e-54 Identity = 268/621 (43.16%), Postives = 328/621 (52.82%), Query Frame = 2
Query: 221 VKMPDFTPEKWAKWLKDKEYAEDRVEHLEDELDKALDEQERLSHANEEMKVECDAEKRLRVQAESDARRAKAXXXXXXXXXXXXSRSLKLGEKQGSVVGKDGAETQELRTEIQQLKAKNHGLNTQMDALAVDHERLAGLLSTAEKDRDAAHKEAGEVRSLVASLEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDELDRLAVDSSGQQTSKGATKARQVAEERLAMSEAQVAALQTELESAREEVVTLQDAAE----------------------------MKAGAMREGXXXXXXXXXXXXXXXXXXXXXXXXXXADKEENQGPSVVGEDDEITTMRTQLK---------------------------ESEVCRTEA-QEKRAELESHLEVA---TKELSGVERRS-------------------------------------------------AEWRDKAMLLEKQLEITSGGLDEEGTKNQLLEMMTLLKDAETSKEEALEKLEARTQEVEELR-------TNAPQTNGTRSFG------------------------DGGSGAG---------VDARVAALQEELDDLHAMLDNVVSERDTAL 1639
K+PDFTPEKW KWLKDK+YAEDRVE LEDELD+ALD+QE+ +HA +E++ E DAEKRLRVQAE+DARRAKA XXXXX SRSLKLGEKQ GKDG E+QELR EIQQLKAKNHGLNTQMDALA DHERLA LL TAEKD+++ EA E+R ++A L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GDELDRLA +S + + A AA +LE A + + ++ AE +KAGA REG XXXXXXXXXXXXXXXX E S ++ E+++ R + E R +A +EK A+ E LE A +E + R+ +E +M KQ DEEGTK+QLLEMM+LLK+AE +K+ A ++L + +++EEL T++P NGT + G +GG+ A + A+VA LQ ELDD+HAMLDNV +ERD AL
Sbjct: 2 TKVPDFTPEKWDKWLKDKKYAEDRVEDLEDELDRALDDQEKAAHAADELRSERDAEKRLRVQAENDARRAKAAADQXXXXXAEASRSLKLGEKQIGGKGKDG-ESQELRVEIQQLKAKNHGLNTQMDALAADHERLASLLDTAEKDKESMGTEAAELRKVLADLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKLGDELDRLAPSASPAKDKEAA------------------AAATAKLEVAAKSLTEAEERAETXXXXXXXXXXXXXXXXXXXDAMXXXXXLKAGAAREGVAIADAQTAKXXXXXXXXXXXXXXXXXXXAE----SASEQEGELSSARKKXXXXXXXXXXXXXQMEGXXXXXXXXXXXAEEHGVRVKALEEKVADSERRLEDAGXXVEEAENLARKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSESAAASMSAAKQ----DDHADEEGTKDQLLEMMSLLKEAEAAKQAAQDELAGKDEKIEELEAKVLASSTSSPP-NGTANTGGLHHDSGYTAEGGAARSLVGDGEAEGGAAAAEAEANGGEDLSAKVATLQAELDDMHAMLDNVSAERDAAL 594
BLAST of mRNA_H-paniculata_contig78.15822.1 vs. uniprot
Match: A0A6H5JRF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF0_9PHAE) HSP 1 Score: 153 bits (386), Expect = 4.660e-34 Identity = 164/287 (57.14%), Postives = 187/287 (65.16%), Query Frame = 2
Query: 221 VKMPDFTPEKWAKWLKDKEYAEDRVEHLEDELDKALDEQERLSHANEEMKVECDAEKRLRVQAESDARRAKAXXXXXXXXXXXXSRSLKLGEKQGSVVGKDGAETQELRTEIQQLKAKNHGLNTQMDALAVDHERLAGLLSTAEK---DRDAAHKEAGEVRSLVASLEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDELDRLAVDSS---GQQTSKGATKARQVAEERLAMSEAQVAALQTELESAREEVV------TLQDAAEMKAGAMREG 1045
K+PDFTPE+W KWLKDK+YAEDRVE LEDELD+A AE+DARRAKA XXXXXXXXX SRSLKLGEKQ GKDG E+QELR EIQQLKAKNHGLNTQMDALA DHERLA LL TAEK D+++ EA E+R ++A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GDELDRLA +S ++ + AT +VA + L +E + ++D AE+KAGA REG
Sbjct: 2 TKVPDFTPEQWDKWLKDKKYAEDRVEDLEDELDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXAENDARRAKAAXXXXXXXXXEASRSLKLGEKQIGGKGKDG-ESQELRVEIQQLKAKNHGLNTQMDALAADHERLASLLDTAEKAFRDKESMGTEAAELRKVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHKLGDELDRLAPSASPSKDKEAAAAATAKLEVATKSLTEAEERAEXXXXXXXXXXXXXXXXXXAKAMRDEAELKAGAAREG 287
BLAST of mRNA_H-paniculata_contig78.15822.1 vs. uniprot
Match: D8LMU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU0_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 2.630e-8 Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 2
Query: 1913 RQSETWRGLSSQLESEKEELSQELISAKLQVAQLSMEVDGLKLRHRQETIATALE-HAEALQHAS 2104
RQS+ L+ Q+E EKEEL+Q+LISAKLQVAQL MEVDGLKL+HRQ T A E HA + AS
Sbjct: 2 RQSDKANSLAVQVEREKEELNQQLISAKLQVAQLYMEVDGLKLQHRQATAVAAREAHALGMDSAS 66 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig78.15822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig78.15822.1 >prot_H-paniculata_contig78.15822.1 ID=prot_H-paniculata_contig78.15822.1|Name=mRNA_H-paniculata_contig78.15822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=673bp MSASVKMPDFTPEKWAKWLKDKEYAEDRVEHLEDELDKALDEQERLSHANback to top mRNA from alignment at H-paniculata_contig78:25064..54181- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig78.15822.1 ID=mRNA_H-paniculata_contig78.15822.1|Name=mRNA_H-paniculata_contig78.15822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=29118bp|location=Sequence derived from alignment at H-paniculata_contig78:25064..54181- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig78:25064..54181- >mRNA_H-paniculata_contig78.15822.1 ID=mRNA_H-paniculata_contig78.15822.1|Name=mRNA_H-paniculata_contig78.15822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4038bp|location=Sequence derived from alignment at H-paniculata_contig78:25064..54181- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |