mRNA_H-paniculata_contig77759.15804.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig77759.15804.1
Unique NamemRNA_H-paniculata_contig77759.15804.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Match: A0A5F8ADV9_MACMU (Uncharacterized protein n=1 Tax=Macaca mulatta TaxID=9544 RepID=A0A5F8ADV9_MACMU)

HSP 1 Score: 145 bits (366), Expect = 2.390e-43
Identity = 72/92 (78.26%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 FFFFLRQSLALLPRLECNGIILAHCNLCLLGSSDSPASASRVAGTTGTRHHTQLIFCIFSRDGVSPC*PGWS*SPDLVIHPPWPPKVLGLQA 276
            FF FLRQSL L PRLEC+G I A C L LLGS  SPASA RVAGTTG RHH  LIFCIFSRD VSPC PGWS SPDLVI PP PPKVLGLQA
Sbjct:   23 FFVFLRQSLTLSPRLECSGAISARCKLRLLGSRHSPASAFRVAGTTGARHHAWLIFCIFSRDSVSPCQPGWSRSPDLVIRPPRPPKVLGLQA 114          
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Match: A0A5F7ZIP8_MACMU (Uncharacterized protein n=1 Tax=Macaca mulatta TaxID=9544 RepID=A0A5F7ZIP8_MACMU)

HSP 1 Score: 143 bits (361), Expect = 9.880e-43
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 FFFFLRQSLALLPRLECNGIILAHCNLCLLGSSDSPASASRVAGTTGTRHHTQLIFCIFSRDGVSPC*PGWS*SPDLVIHPPWPPKVLGLQA 276
            F F   + LAL PRLEC+G I  HCNLCL GSSDSPAS+SRVAGTTG  HH  LIFCIFS+DGVSPC PGWS SPDLVI PP P KVLGLQA
Sbjct:   12 FVFCFERRLALSPRLECSGAISGHCNLCLPGSSDSPASSSRVAGTTGACHHAWLIFCIFSKDGVSPCWPGWSQSPDLVIRPPQPHKVLGLQA 103          
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Match: G7PXF9_MACFA (Uncharacterized protein (Fragment) n=1 Tax=Macaca fascicularis TaxID=9541 RepID=G7PXF9_MACFA)

HSP 1 Score: 142 bits (358), Expect = 1.860e-42
Identity = 70/89 (78.65%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    7 FFLRQSLALLPRLECNGIILAHCNLCLLGSSDSPASASRVAGTTGTRHHTQLIFCIFSRDGVSPC*PGWS*SPDLVIHPPWPPKVLGLQ 273
            FFLR+SLAL PRLEC+G I AHC   L GS  SPASASRVAGTTG RHH +LIFCIFSRDGVSPC PGWS SPDLVI  P PPKVLGLQ
Sbjct:    1 FFLRRSLALSPRLECSGPISAHCKRRLPGSRHSPASASRVAGTTGARHHARLIFCIFSRDGVSPCWPGWSRSPDLVIRLPQPPKVLGLQ 89          
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Match: A0A8I5NUM6_PAPAN (Uncharacterized protein n=1 Tax=Papio anubis TaxID=9555 RepID=A0A8I5NUM6_PAPAN)

HSP 1 Score: 144 bits (363), Expect = 4.130e-42
Identity = 71/89 (79.78%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 FFFFLRQSLALLPRLECNGIILAHCNLCLLGSSDSPASASRVAGTTGTRHHTQLIFCIFSRDGVSPC*PGWS*SPDLVIHPPWPPKVLG 267
            F FFLR SL L PRLEC+G ILAHC L L GS  SPASASRVAGTTG RHHT LIFCIFSRDGVSPC PGWS SP LVI PP PPKVLG
Sbjct:   59 FLFFLRGSLTLSPRLECSGAILAHCKLRLPGSRHSPASASRVAGTTGARHHTWLIFCIFSRDGVSPCQPGWSQSPHLVIRPPQPPKVLG 147          
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Match: A0A7N9D7W8_MACFA (Uncharacterized protein n=1 Tax=Macaca fascicularis TaxID=9541 RepID=A0A7N9D7W8_MACFA)

HSP 1 Score: 143 bits (360), Expect = 4.450e-42
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = -2
Query:    3 ACNPSTLGGQGGWITRSGDQDHPG*HGETPSLLKIQKISWVWWRVPVVPATREAEAGESLEPRRQRLQ*AKIMPLHSSLGNRARLCLKKKK 275
            ACNPSTLGG+GG ITRSGD+DHP  HG+TPSLLKIQKIS  WWR PVVPATREAEAGE  EP R+ LQ A++ PLHSSLGNRARL LKKKK
Sbjct:   10 ACNPSTLGGRGGRITRSGDRDHPDKHGKTPSLLKIQKISLAWWRAPVVPATREAEAGEWREPGRRSLQGAEMAPLHSSLGNRARLHLKKKK 100          
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Match: A0A5F4WD36_CALJA (Uncharacterized protein n=2 Tax=Callithrix jacchus TaxID=9483 RepID=A0A5F4WD36_CALJA)

HSP 1 Score: 140 bits (354), Expect = 1.500e-41
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = -2
Query:   33 ACNPSTLGGQGGWITRSGDQDHPG*HGETPSLLKIQKISWVWWRVPVVPATREAEAGESLEPRRQRLQ*AKIMPLHSSLGN 275
            ACNPSTLGG+GGWITRS ++DHPG HGETPSLLKIQKISW WWRVPV+PAT+EAEAGE  EPRR+RL  A+I PLHSS GN
Sbjct:    8 ACNPSTLGGRGGWITRSRNRDHPGQHGETPSLLKIQKISWAWWRVPVIPATQEAEAGELPEPRRRRLPGAEIAPLHSSPGN 88          
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Match: A0A8I5NL67_PAPAN (Uncharacterized protein n=1 Tax=Papio anubis TaxID=9555 RepID=A0A8I5NL67_PAPAN)

HSP 1 Score: 139 bits (351), Expect = 2.170e-41
Identity = 69/92 (75.00%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    1 FFFFLRQSLALLPRLECNGIILAHCNLCLLGSSDSPASASRVAGTTGTRHHTQLIFCIFSRDGVSPC*PGWS*SPDLVIHPPWPPKVLGLQA 276
            +FFFLR+SLAL PRLEC+G I AHC L L GS  SPASASRVAGTTG RHH +LIFC+FS DGVSP    WS SPDLVI P WPPKVLGLQA
Sbjct:    2 YFFFLRRSLALSPRLECSGQISAHCKLRLPGSRHSPASASRVAGTTGARHHARLIFCVFSTDGVSP----WSRSPDLVIRPSWPPKVLGLQA 89          
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Match: A0A8I5NBC2_PAPAN (Uncharacterized protein n=1 Tax=Papio anubis TaxID=9555 RepID=A0A8I5NBC2_PAPAN)

HSP 1 Score: 140 bits (354), Expect = 3.460e-41
Identity = 70/92 (76.09%), Postives = 75/92 (81.52%), Query Frame = 1
Query:    1 FFFFLRQSLALLPRLECNGIILAHCNLCLLGSSDSPASASRVAGTTGTRHHTQLIFCIFSRDGVSPC*PGWS*SPDLVIHPPWPPKVLGLQA 276
            FFFFLR SL LL  LE +G+I AHCN  L GSSDSPASASRVAG TG +H+  LIFCIFSRDGVSPC PGWS +PDLVI PP PPKVLGLQA
Sbjct:   48 FFFFLRWSLTLLAGLEFSGVISAHCNHRLPGSSDSPASASRVAGITGVQHYMWLIFCIFSRDGVSPCWPGWSRTPDLVIRPPRPPKVLGLQA 139          
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Match: A0A5F7ZI80_MACMU (Uncharacterized protein n=1 Tax=Macaca mulatta TaxID=9544 RepID=A0A5F7ZI80_MACMU)

HSP 1 Score: 140 bits (353), Expect = 3.510e-41
Identity = 70/91 (76.92%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    4 FFFLRQSLALLPRLECNGIILAHCNLCLLGSSDSPASASRVAGTTGTRHHTQLIFCIFSRDGVSPC*PGWS*SPDLVIHPPWPPKVLGLQA 276
            F F RQSLAL PRLEC+  I AHC L LLGS  SPASAS VAGTTG RHH +LIFCIFSRDGVSPC PGWS  PDLVI  P PPKVLGLQA
Sbjct:   38 FIFSRQSLALSPRLECSDAISAHCKLRLLGSRHSPASASPVAGTTGARHHARLIFCIFSRDGVSPCPPGWSRYPDLVIRLPRPPKVLGLQA 128          
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Match: A0A5F7Z8B0_MACMU (Uncharacterized protein n=1 Tax=Macaca mulatta TaxID=9544 RepID=A0A5F7Z8B0_MACMU)

HSP 1 Score: 140 bits (352), Expect = 4.280e-41
Identity = 68/92 (73.91%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    1 FFFFLRQSLALLPRLECNGIILAHCNLCLLGSSDSPASASRVAGTTGTRHHTQLIFCIFSRDGVSPC*PGWS*SPDLVIHPPWPPKVLGLQA 276
            F +FLR +L + PRLEC+G I AHC L L GS  SPASASRVAGTTG R   +LIFCIFSRDGVSPC PGWS SPDLVIHPP PPKVLGL+A
Sbjct:   32 FIYFLRWTLTVSPRLECSGAISAHCKLHLPGSRHSPASASRVAGTTGARLRARLIFCIFSRDGVSPCWPGWSRSPDLVIHPPRPPKVLGLRA 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77759.15804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5F8ADV9_MACMU2.390e-4378.26Uncharacterized protein n=1 Tax=Macaca mulatta Tax... [more]
A0A5F7ZIP8_MACMU9.880e-4375.00Uncharacterized protein n=1 Tax=Macaca mulatta Tax... [more]
G7PXF9_MACFA1.860e-4278.65Uncharacterized protein (Fragment) n=1 Tax=Macaca ... [more]
A0A8I5NUM6_PAPAN4.130e-4279.78Uncharacterized protein n=1 Tax=Papio anubis TaxID... [more]
A0A7N9D7W8_MACFA4.450e-4279.12Uncharacterized protein n=1 Tax=Macaca fasciculari... [more]
A0A5F4WD36_CALJA1.500e-4180.25Uncharacterized protein n=2 Tax=Callithrix jacchus... [more]
A0A8I5NL67_PAPAN2.170e-4175.00Uncharacterized protein n=1 Tax=Papio anubis TaxID... [more]
A0A8I5NBC2_PAPAN3.460e-4176.09Uncharacterized protein n=1 Tax=Papio anubis TaxID... [more]
A0A5F7ZI80_MACMU3.510e-4176.92Uncharacterized protein n=1 Tax=Macaca mulatta Tax... [more]
A0A5F7Z8B0_MACMU4.280e-4173.91Uncharacterized protein n=1 Tax=Macaca mulatta Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77759contigH-paniculata_contig77759:264..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score112.1
Seed ortholog evalue1e-22
Seed eggNOG ortholog9601.ENSPPYP00000017526
Hectar predicted targeting categorysignal peptide
EggNOG OGs29NWU@1,2RW82@2759,35TKZ@314146,39IUM@33154,3CEJU@33208,3DVZ4@33213,3JMTI@40674,48PCH@7711,49KF9@7742,4MQKF@9443,4N9BT@9604
Best tax levelHominidae
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size204
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.1729505-UTR-H-paniculata_contig77759:263..3351622930966.1729505-UTR-H-paniculata_contig77759:263..335Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig77759 264..335 -
1691481530.803383-UTR-H-paniculata_contig77759:263..3351691481530.803383-UTR-H-paniculata_contig77759:263..335Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig77759 264..335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.1907387-CDS-H-paniculata_contig77759:335..5391622930966.1907387-CDS-H-paniculata_contig77759:335..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77759 336..539 -
1691481530.8131802-CDS-H-paniculata_contig77759:335..5391691481530.8131802-CDS-H-paniculata_contig77759:335..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77759 336..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77759.15804.1prot_H-paniculata_contig77759.15804.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig77759 336..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig77759.15804.1

>prot_H-paniculata_contig77759.15804.1 ID=prot_H-paniculata_contig77759.15804.1|Name=mRNA_H-paniculata_contig77759.15804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
FFFFLRQSLALLPRLECNGIILAHCNLCLLGSSDSPASASRVAGTTGTRH
HTQLIFCIFSRDGVSPC*
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mRNA from alignment at H-paniculata_contig77759:264..539-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig77759.15804.1 ID=mRNA_H-paniculata_contig77759.15804.1|Name=mRNA_H-paniculata_contig77759.15804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig77759:264..539- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTTGCCCAGGCTGGAGTG CAATGGCATAATCTTAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCG ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCAC CATACCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTG TTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCACCCACCTTGGC CTCCCAAAGTGCTGGGATTACAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig77759:264..539-

>mRNA_H-paniculata_contig77759.15804.1 ID=mRNA_H-paniculata_contig77759.15804.1|Name=mRNA_H-paniculata_contig77759.15804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig77759:264..539- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTTGCCCAGGCTGGAGTG
CAATGGCATAATCTTAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCG
ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCAC
CATACCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTG
TTAGTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTTGCCCAGGCTGG
AGTGCAATGGCATAATCTTAGCTCACTGCAACCTCTGCCTCCTGGGTTCA
AGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCG
CCACCATACCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCAC
CGTGTTAG
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