mRNA_H-paniculata_contig7764.15798.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7764.15798.1
Unique NamemRNA_H-paniculata_contig7764.15798.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7764.15798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7764contigH-paniculata_contig7764:883..3056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size295
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.1546278-CDS-H-paniculata_contig7764:882..11151622930965.1546278-CDS-H-paniculata_contig7764:882..1115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7764 883..1115 +
1691481530.321431-CDS-H-paniculata_contig7764:882..11151691481530.321431-CDS-H-paniculata_contig7764:882..1115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7764 883..1115 +
1622930965.1689382-CDS-H-paniculata_contig7764:2996..30541622930965.1689382-CDS-H-paniculata_contig7764:2996..3054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7764 2997..3054 +
1691481530.3297453-CDS-H-paniculata_contig7764:2996..30541691481530.3297453-CDS-H-paniculata_contig7764:2996..3054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7764 2997..3054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7764.15798.1prot_H-paniculata_contig7764.15798.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7764 883..3054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7764.15798.1

>prot_H-paniculata_contig7764.15798.1 ID=prot_H-paniculata_contig7764.15798.1|Name=mRNA_H-paniculata_contig7764.15798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
CELFDLADCDVLEWGAMNIGVAPLVLMAISIIPRASLGLLVSPIAPSPHR
SSGQKGWYGITDSNLTPTQLWGSASIFKTALTCTPSKKKDLAAFSSC
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mRNA from alignment at H-paniculata_contig7764:883..3056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7764.15798.1 ID=mRNA_H-paniculata_contig7764.15798.1|Name=mRNA_H-paniculata_contig7764.15798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2174bp|location=Sequence derived from alignment at H-paniculata_contig7764:883..3056+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGAGCTGTTTGACTTAGCTGACTGCGACGTGCTGGAGTGGGGAGCCAT
GAACATCGGCGTGGCTCCACTTGTCCTCATGGCCATCTCTATTATTCCAA
GAGCCTCTTTGGGTCTGCTTGTTTCGCCTATAGCGCCTTCACCGCATAGA
AGCAGCGGGCAGAAGGGGTGGTACGGTATTACAGACAGCAACCTCACACC
AACACAATTATGGGGCTCTGCATCGATATTCAAGTGAGTTAGGTATATTT
TGGATATGTTTGTCTGTGGATGTTTCCTGTCATGTTGGTACTGCTGTTAT
TTACGTAGCGCCAGGATGTAGTAGCATCGGTATCTTGGGTGATATCGCGC
TGTTGTCACGGTGACCATGCTCTCTGTGAGGAAAGTGAAAGTGTGGGGCC
GCAGGGATGAGTGTACAGATAGCTTCTAGGGACAAAAATATATGATGGTG
AGGTTGATGATAACTGTTCCGGAAATAACCGTACCCTCAATCACACTCAT
TACTAATACAATACTGTATATCTCGTATTCTGACATGTGTCCACAGCAGA
TCCATACTGGCAATGGTGGTCGATAATGGAAATGGCTGAACATAAGATTT
CACCCCCCGGACACATACGAATACTTGCAAATGGTTTTCACAAAACTCTG
AGAGTATTCGCCTGAGTTTTAGAATGAGCTCGTGTGTACCATGTGCGCGG
AACCATCCACGACTGCTAATAATACTCATAATTCGAAGGAACAAGGGTGG
GTTCTTTATTCTATGCGTCCGCTCATTCTGAAACTCAGGCGAACACTTCC
ACTTTTTTGTGAAGACCATTTGCAAGTATTTATATTATTCCGGGGAGGTG
TAAGATTTACTCCCCATTCGGATTGGAAACCACCAGTTTTTGGAACGTTC
CCAAAGTAGTAGCCCACAAGCAGATCTGGCTACGATTTGCTGTCCCCTTT
AAGGCCACTCATTGCCGATGCGACCTTCAAGTGGGCATAAATCAGTTTGG
TTTATTGTATTATATTCCATGCGGAGCGATCCTGTGTATAACAGCATATT
GGTGAAATGGGAACCCAACTTTGAGATGGGAACCCTGGGTTATATTGGAA
ATAGGATGTTTCCTAAAAATCAAATCGGATCTTCAGGATACAGCCTATTT
TCAATATAACCTAGGGTCCCCTTCTCAAAGCTGGGTCCCCATTTCACCAA
TATGCTGTTGTATGTGCTGCATTCAGGCCTATGCTACATAACTCTAAACC
TGTTTTTTTTTCATTTTCTGTTGCTTTTACAAGCGTGTATGTGTTGTAGT
TGGTGTTTTGGGACCTCACGTTGTCGATGGGTCGTATCTCCGTAGATTTG
TTTTGCCGTGTCACAAGATTTTTTTTTTTTTTGCTCAGTCCTCCACAGTT
CGACCTTGCCAATGTCAGTCAAGTACTGGTAGCCGCAGCAAGCGCTACAC
ACTGTTAATGTTACATCAACAACGCAACAGCACGGGCAGTCACTACTCTT
CCGTGGCGTTCGAATTTTGTTTGAATGATAATCCAGGACTGGGATATAGC
ACTGATCAATTGACTCCCTGTACCATGCGTCCAACGAATGGCCGGCTGTA
ATGCATCATGTGCGAGGCGTTATCCTGGTTTTTGCTCACTTGAAGGCCGA
CCGGCCTTAAAGCTATGAAGTGGGTCAAAACTACTAGAAGGTCGATCAGT
CATTAAGACCGATTTTTCGGCTGACACGTTCGGGCGTCAAAGGGGGCCAC
CCACTCTACTCGAAAACAGTGACGTCTCGAGGTCTGTATTAACCTGTGTA
TTATCTTACCTAATGCATGAAAAAGCGCCCCAAAACCCATCTTAGGAAGC
AAATCTCGGAGGGCTGCATCCGGAAAGAGTTACCAGCGATTTTGTACCAA
GTTATGATCCAACATCATTTGGTTTTCTCACCGAATGAATTTGAAATGTT
TTGTTAACGGCAATTGTGGCAAATATCATATGGAATCGCGACTATAAACA
ACGTAGCACATGCCCACTATCTATGCACGAAACATACTGGAAATATTCAG
CAGAATTCATCTTCCATTTCTCTTGCTCACCCATGTCTGTTGTATAACAT
GTATGTACCTTCAGGACGGCGCTGACATGTACACCTAGTAAGAAAAAAGA
TTTAGCGGCATTTTCCTCTTGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig7764:883..3056+

>mRNA_H-paniculata_contig7764.15798.1 ID=mRNA_H-paniculata_contig7764.15798.1|Name=mRNA_H-paniculata_contig7764.15798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig7764:883..3056+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGAGCTGTTTGACTTAGCTGACTGCGACGTGCTGGAGTGGGGAGCCAT
GAACATCGGCGTGGCTCCACTTGTCCTCATGGCCATCTCTATTATTCCAA
GAGCCTCTTTGGGTCTGCTTGTTTCGCCTATAGCGCCTTCACCGCATAGA
AGCAGCGGGCAGAAGGGGTGGTACGGTATTACAGACAGCAACCTCACACC
AACACAATTATGGGGCTCTGCATCGATATTCAATGTGAGCTGTTTGACTT
AGCTGACTGCGACGTGCTGGAGTGGGGAGCCATGAACATCGGCGTGGCTC
CACTTGTCCTCATGGCCATCTCTATTATTCCAAGAGCCTCTTTGGGTCTG
CTTGTTTCGCCTATAGCGCCTTCACCGCATAGAAGCAGCGGGCAGAAGGG
GTGGTACGGTATTACAGACAGCAACCTCACACCAACACAATTATGGGGCT
CTGCATCGATATTCAAGACGGCGCTGACATGTACACCTAGTAAGAAAAAA
GATTTAGCGGCATTTTCCTCTTGTGACGGCGCTGACATGTACACCTAGTA
AGAAAAAAGATTTAGCGGCATTTTCCTCTTGT
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