mRNA_H-paniculata_contig7762.15797.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7762.15797.1
Unique NamemRNA_H-paniculata_contig7762.15797.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7762.15797.1 vs. uniprot
Match: D7FN77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN77_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 2.000e-56
Identity = 97/142 (68.31%), Postives = 113/142 (79.58%), Query Frame = 1 
Query:    1 YFAEEFSKTSLYWSSLCDLMRDNDGSTQTVLSYFAGKLEADRTRSASLYANADKLFGDKKGHAKMRHDKIRHEEQKASQKGEIYVLDAEAARAGGPGKMAPANSSVRALWEMAEMDCRAASCSDTLCDELEEEHMLGKVKVM 426
            YFA+E+ K+S+YWSSLCD+M  NDG TQ VLSY AGKLEADR  +A+++ NADK+FG+KKG  K+RHDKIRHEEQKA  KG    +D E   AGGPGK AP NS+V+A+WEMAEMDCRAA   D LCDELE E MLGKVKVM
Sbjct:   27 YFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRINTAAIFVNADKVFGEKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGPGKEAPTNSAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVM 168
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BLAST of mRNA_H-paniculata_contig7762.15797.1 vs. uniprot
Match: A0A6H5L7U6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7U6_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.200e-55
Identity = 96/142 (67.61%), Postives = 112/142 (78.87%), Query Frame = 1 
Query:    1 YFAEEFSKTSLYWSSLCDLMRDNDGSTQTVLSYFAGKLEADRTRSASLYANADKLFGDKKGHAKMRHDKIRHEEQKASQKGEIYVLDAEAARAGGPGKMAPANSSVRALWEMAEMDCRAASCSDTLCDELEEEHMLGKVKVM 426
            YFA+E+ K+S+YWSSLCD+M  NDG TQ VLSY AGKLEADR  +A+++ANADKLF +KKG  K+RHDKIRHEEQKA  KG    +D E   AGGP K AP N++V+A+WEMAEMDCRAA   D LCDELE E MLGKVKVM
Sbjct:   27 YFADEYRKSSMYWSSLCDVMSLNDGPTQQVLSYVAGKLEADRVNTAAIFANADKLFDEKKGATKLRHDKIRHEEQKAKTKGVTASIDVELLVAGGPEKEAPTNNAVKAIWEMAEMDCRAARNRDALCDELEHEDMLGKVKVM 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7762.15797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN77_ECTSI2.000e-5668.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7U6_9PHAE3.200e-5567.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7762contigH-paniculata_contig7762:588..4665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size429
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7762.15797.1prot_H-paniculata_contig7762.15797.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7762 588..4665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.0859568-CDS-H-paniculata_contig7762:587..8191622930965.0859568-CDS-H-paniculata_contig7762:587..819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7762 588..819 -
1691481530.2937305-CDS-H-paniculata_contig7762:587..8191691481530.2937305-CDS-H-paniculata_contig7762:587..819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7762 588..819 -
1622930965.101544-CDS-H-paniculata_contig7762:3292..34021622930965.101544-CDS-H-paniculata_contig7762:3292..3402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7762 3293..3402 -
1691481530.305438-CDS-H-paniculata_contig7762:3292..34021691481530.305438-CDS-H-paniculata_contig7762:3292..3402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7762 3293..3402 -
1622930965.1164305-CDS-H-paniculata_contig7762:4578..46651622930965.1164305-CDS-H-paniculata_contig7762:4578..4665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7762 4579..4665 -
1691481530.3133903-CDS-H-paniculata_contig7762:4578..46651691481530.3133903-CDS-H-paniculata_contig7762:4578..4665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7762 4579..4665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7762.15797.1

>prot_H-paniculata_contig7762.15797.1 ID=prot_H-paniculata_contig7762.15797.1|Name=mRNA_H-paniculata_contig7762.15797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
YFAEEFSKTSLYWSSLCDLMRDNDGSTQTVLSYFAGKLEADRTRSASLYA
NADKLFGDKKGHAKMRHDKIRHEEQKASQKGEIYVLDAEAARAGGPGKMA
PANSSVRALWEMAEMDCRAASCSDTLCDELEEEHMLGKVKVM*
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mRNA from alignment at H-paniculata_contig7762:588..4665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7762.15797.1 ID=mRNA_H-paniculata_contig7762.15797.1|Name=mRNA_H-paniculata_contig7762.15797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4078bp|location=Sequence derived from alignment at H-paniculata_contig7762:588..4665- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTTCGCCGAGGAGTTCAGCAAGACCTCCCTTTACTGGTCCTCCCTATG
CGATCTCATGAGAGACAACGATGGTTCTACCCAGACGGTGAGATTGGGCA
CCCCTCCGTCTATAATAACACTCCTATTGTACAGTACGGGTTCAAGTGGG
GCTACGGTTGGAGAGAGGGGGGCGAAGGGGGGGGCTATGAGCGCTGCTCC
GCACAGCGGCCAAAAAATAAAACCTATTCAATGGTATGCGTCCAGGCATC
CGCAGATCTCCAATGCACGATACGGAATTACCATACTGTTTTAAGGAGGA
ATACATATATATATATATATATATATATTGTCCAGCTGCTCCGCAACGTG
GCTTAAAACTTGAAATAATTCGGCTAAAATTCCCCCCTCCTTGTCAGCAG
CCCGGCTCGGCTCCATGATGAGAAAGTCTTTGTGTCGAACGAGGCTTGAA
ACCTTACTTTTGGGGAAGATCATGAGCAGTTAGTATTATTGTTTATTACT
CTTTGTATAGGACTTGGTATGGGGCTGCGATTTGAGTCGTATTATTTTTT
ACCTAAGCCAGATTTCTTATGTGGGTTGTTTCCAAAAAGTGAGCTTCAAT
TTCTTGTTTGGTAATCTCTTGACTGGTGAGCGGGCTCGTACTGGTACTGA
AAACTCTTTTGGGTCGGTAATTTTGAGTGACCTTTCGACTTATATAGAGT
TTTATCGTGGGGATTGTGTCAAGATAACGGTAAATAGAGTAGTTTTGTTT
GGGAGAAGTGTTACTTATCAACCCCTTTGGAGCCTACGATTTCCCCCGAG
AATGTTGTCGTGATGACGATGATGACGATGATGATGACGACGATGGCAAT
GATCGTGGTGAAGATATTTCGATATAAGAGATTAAAATCTTGATGCAACG
CTTGTCTTTGCTATGTGTGTCTTTTTTGTTGTTGTTGTTGTTGTAATAGT
AGCAGCAGCATTGATGGTGGTAATAGGGGGAGTAGAGTTTTGGCGAGGCC
CCGCCAATTGCAGTCAATATCCGTTCTGTTTAAACGTTCGTTTTCAGTCA
TTTTTAGTGTGGGATTTTATTTTTTTTTCGCGTGGTTTGTTCATGTTGAT
ATTGTCTGCCCGCCTGCTCATGTATATCTGGTCTAATGTCTTTTGTCTCT
TTTCTCTTTGCTTGCCATTGGTTGTCGGTGTTGTTTTTCTTGGGCGCCAC
TTCTGGATCTTATATATATATATATATATATATATATATATATATATATA
TTCATATATGTAGGTGTTGTCCTACTTTGCGGGCAAACTGGAGGCAGATC
GCACGCGTTCAGCCTCCCTCTACGCTAACGCGGACAAGCTCTTCGGTGAC
AAGAAGGGGCACGCTAAGATGAGGTACGATACGCAATTCACGAGATGTAC
CACTTGCGAGCAAAAATGTAACAGGACGGAACGCGGGTAGGCTTGAATTT
TGTTTGGACAGGAGGACCTCGGAACAACCGTGAAGCAATCGAACCGATTG
CAGACAGTAATAAAAGATAAGTATTTTTGTGAGAACATCTTTTACGCCTC
CGACAAATATGTGTAGTCACACAACTAATCCATAAGCCCTAAGTCAGGAT
TTTCCCACATATATATATATATATATATATATATATATATATTGCTATTG
GAAAAACAACAGGACTGTTTTGACGGACCATGGTTTGGAAAAATTTGTGA
ACGCGGAAAGTTTTCGCTATTTCTGCTCCTCTTGGTCGGTGTCAAAAGCG
CATTCCGGGGAGAAAAGCTAAGATTAGCTGACTCAAATAATTATTCAAGC
ACAGTTGACTGAGTAGACTATAGTGAAGTGATGGTCTCGTCAATTATTAA
TACGATAGTTGTCTGGGGTGTGATTATGTTTAATCTCAAAATCAAGAACC
GATCAACCTCAGGCAGAGTTTAAAGTAAAGTAACAAATATACCGACCGCG
AGAATTGGTTCTGGGTTTGGTTCGGTCACGAGTATAAATGAACAGTCCCG
TGAAATGTCGGGATCGCGTGAAAGATTTTGGATAAAAAAAATACACAGGG
GTTGGATTGAAATGGTTCTCATATGAACGACTCAAGACCGTGAAAATAGA
AAATAACCGTTCATTTTTGCTTACTGAAATTTTCACAAATGTAGTAAAAT
TTACCCTGTCACTGTCACTTTAACTAACTACAACTCTGAAACCTCATATT
GTAACTCCGTTGTACTTACGTTGAGGTTATGCCAATGACTCTTAATCTAC
AGTTTTATATGCTCACCAGCAAAACTAAAAAAAAACACCAAAAACGGGGG
GATGGCATATACTATTTAGATTTTAGCTCCTATGGATAGCAGTGTTTCGT
TCCTATAGTACATACCTGAAAATGCAAGCATTATTCCTGTGCCTAGACAC
GACGAATGGCATGATAACATTTATACCTGCTGTTAAAAGGTAGCTTCCCG
CTCTGACTGTATCCATCTTTCCCATCTCGTATCTCGTTATGGCGGAGTAA
AGTCTTTGTGAGTCTCTCCGGCTACTCGGGGTGGTGTTAATCTTGGTTTT
AGTATTGTATGGGACGACTACAGTCGTACACATATATTTTGATACATGAG
GGGGGCTACAGATCGTGTAGGAACTAGGCTTCATGTTTGCCAACGCAGAA
CAAGCAAAAATTCTCGCCCCCCCCCCCGGACTGTCAAAAGAAGGGGCTAT
AGCGGTTCTAGGAAATAGAAATTGGCCCCAATACGCGAGGGTTGGGGTAG
ATAGAGTAAGTAAAACATGTTTTCAGTCAGATTTGGCAACGTAGGAAAGG
GCGATTGGTCATTATCCATTGGAAATGGCTTTGATAACATCGAGGCTCCG
TCCTCCCGAGGACACGTGGTCATACATATGGAAGCAGCGGACAAGGTTTT
TACCTCAGCCTTCCGGGGGTTAAAAAAACAAACAAACAAAAAAACGTGGT
CATACAGAGGGTGTACGCTCTGGGGTGGAAAGGACACGTGGTCGTGGTCA
ATGTGTAACAGCTACGACATGAAAACCATGAATACCCCCCCTCTCTAGAG
CTCCATTTATCTTATTTTGCTGATGAGTGCATCCAACTACAGATTGGGTA
CGCCTCCCATGGTAATTTGGTTGGTCTGTAGAATGAGTCACTGGTCATTC
AGCAGTACTGGAAAATAACACTGAGCATAAAACCCCCCGAATCTGAGTAA
TGGCAGTAGTGTGACGTGTTTTTGGGTGATTTTTGTACCTGTACCACAGG
TTCAAACCGTAATTTGCATGTTGTCCATACTGTCTGTCCTGTTAGGTTGC
TCTTTTTTGGCGTTTAAAAACTGCTGATGATGATGGATGGGTATACACCT
CCATGATTTTTGTAGGCTGCATAGCCTAGTGATGGACGCAACAGACGTTG
ATGCTGTAGAGTACTTGTTAATCTCTATGTATTGTGTATAGGTGTTGCGA
GAGCTCGTCACATAACATCAATATTTCATGTCCCTTATTTCGACGTGATT
TTGCTGACGAGCGTTCGCAGCTAAGAGTTTTTGGGGTCAGCTGTATAGTA
CGACGGAGTTATTAGGTGAACGTTAGAGATGTACCAGCTGTGCCTAGTGG
GTCGGCTGGTGAATTAAAGCTCTTGGTGAGTGAATGGGGTGTTTGGGGTT
CGTGCCATGCGTTTATGTGAAGGCTACTTTACGTTTACGTACAGTATACA
AGCGAGTGATACACTGATACTCCCTATGAAGGTGGTAGTCCACATCCGCC
TTCTCCCGAGGACGCGTAGTCAAGGTCTATAAACTACGGCGTGCAAAATA
TGAGTATGCCTCCTCTCTTATTCCCACCTCCACCCCTTGCCGATAGGCAC
GACAAAATCCGCCACGAGGAGCAAAAGGCCTCTCAGAAGGGCGAAATATA
CGTACTGGATGCCGAAGCCGCGAGGGCTGGGGGGCCGGGCAAGATGGCAC
CCGCGAACAGCTCAGTCAGGGCTCTGTGGGAGATGGCGGAGATGGACTGC
CGGGCGGCGAGCTGCAGCGACACGCTCTGCGATGAGCTCGAGGAGGAACA
CATGCTCGGAAAAGTCAAGGTAATGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig7762:588..4665-

>mRNA_H-paniculata_contig7762.15797.1 ID=mRNA_H-paniculata_contig7762.15797.1|Name=mRNA_H-paniculata_contig7762.15797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig7762:588..4665- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTTCGCCGAGGAGTTCAGCAAGACCTCCCTTTACTGGTCCTCCCTATG
CGATCTCATGAGAGACAACGATGGTTCTACCCAGACGTACTTCGCCGAGG
AGTTCAGCAAGACCTCCCTTTACTGGTCCTCCCTATGCGATCTCATGAGA
GACAACGATGGTTCTACCCAGACGGTGTTGTCCTACTTTGCGGGCAAACT
GGAGGCAGATCGCACGCGTTCAGCCTCCCTCTACGCTAACGCGGACAAGC
TCTTCGGTGACAAGAAGGGGCACGCTAAGATGAGGTGTTGTCCTACTTTG
CGGGCAAACTGGAGGCAGATCGCACGCGTTCAGCCTCCCTCTACGCTAAC
GCGGACAAGCTCTTCGGTGACAAGAAGGGGCACGCTAAGATGAGGCACGA
CAAAATCCGCCACGAGGAGCAAAAGGCCTCTCAGAAGGGCGAAATATACG
TACTGGATGCCGAAGCCGCGAGGGCTGGGGGGCCGGGCAAGATGGCACCC
GCGAACAGCTCAGTCAGGGCTCTGTGGGAGATGGCGGAGATGGACTGCCG
GGCGGCGAGCTGCAGCGACACGCTCTGCGATGAGCTCGAGGAGGAACACA
TGCTCGGAAAAGTCAAGGTAATGTAAGCACGACAAAATCCGCCACGAGGA
GCAAAAGGCCTCTCAGAAGGGCGAAATATACGTACTGGATGCCGAAGCCG
CGAGGGCTGGGGGGCCGGGCAAGATGGCACCCGCGAACAGCTCAGTCAGG
GCTCTGTGGGAGATGGCGGAGATGGACTGCCGGGCGGCGAGCTGCAGCGA
CACGCTCTGCGATGAGCTCGAGGAGGAACACATGCTCGGAAAAGTCAAGG
TAATGTAA
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