mRNA_H-paniculata_contig77586.15793.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig77586.15793.1
Unique NamemRNA_H-paniculata_contig77586.15793.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Match: A0A0S0GA69_COSCS (NmrA domain-containing protein n=35 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GA69_COSCS)

HSP 1 Score: 287 bits (735), Expect = 1.490e-95
Identity = 144/152 (94.74%), Postives = 149/152 (98.03%), Query Frame = 1
Query:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYGDLTIPETLPFSFQGVTALIDASTTKSEDNSELIHVDWYGKLIVIELAKYTQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQGLI 456
            MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNK+AANFLKEWGAELVYGDLTIPETLP SFQGVTA+IDASTTK EDN+ELIHVDWYGKLIVIEL+KY QLKRFIFLSILNSEKYPYITLMQMKYRIEKFI+SSTIPFTIFKYAGFFQGLI
Sbjct:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAELVYGDLTIPETLPLSFQGVTAIIDASTTKPEDNTELIHVDWYGKLIVIELSKYVQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIKSSTIPFTIFKYAGFFQGLI 152          
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Match: A0A7U1AQL7_9PHAE (NmrA domain-containing protein n=3 Tax=Laminariales TaxID=2886 RepID=A0A7U1AQL7_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 1.010e-92
Identity = 139/148 (93.92%), Postives = 146/148 (98.65%), Query Frame = 1
Query:   13 ILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYGDLTIPETLPFSFQGVTALIDASTTKSEDNSELIHVDWYGKLIVIELAKYTQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQGLI 456
            +LGGTGTLGRQIVRKALENGFQVRCIVRNK+AANFLKEWGAELVYGDLTIPETLP SFQGVTA+IDASTTK+EDN+ELIHVDWYGKLIVIEL+KY QLKRFIFLSILNSEKYPYITLMQMKYRIEKFI+SSTIPFTIFKYAGFFQGLI
Sbjct:    1 MLGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAELVYGDLTIPETLPLSFQGVTAIIDASTTKAEDNTELIHVDWYGKLIVIELSKYAQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIKSSTIPFTIFKYAGFFQGLI 148          
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Match: A0A8F0FB09_9PHAE (NmrA domain-containing protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB09_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 4.360e-90
Identity = 136/152 (89.47%), Postives = 144/152 (94.74%), Query Frame = 1
Query:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYGDLTIPETLPFSFQGVTALIDASTTKSEDNSELIHVDWYGKLIVIELAKYTQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQGLI 456
            MTLLI GGTGTLGRQIVRKALENGFQVRCIVRNK+AANFLKEWGAELVYGDLT+PETLP SFQGVTA+IDASTTKSED SELI VDWYGKLIVIEL+KY Q+KRFIFLSILNSEKYPYITLMQMKYR+EK I+SS +PFTIFKYAGFFQ LI
Sbjct:    1 MTLLIFGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAELVYGDLTLPETLPLSFQGVTAIIDASTTKSEDTSELISVDWYGKLIVIELSKYAQIKRFIFLSILNSEKYPYITLMQMKYRVEKLIKSSGVPFTIFKYAGFFQALI 152          
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Match: A0A8F0JYI7_9PHAE (NmrA domain-containing protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYI7_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 3.590e-84
Identity = 126/152 (82.89%), Postives = 142/152 (93.42%), Query Frame = 1
Query:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYGDLTIPETLPFSFQGVTALIDASTTKSEDNSELIHVDWYGKLIVIELAKYTQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQGLI 456
            MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNK+ ANFLKEWGAELVYGDL +PETLP SFQGV+A+IDASTTKSEDN+EL+++DWYGKLI+IEL+KY  ++RFIFLSILNSE YPYITLM+MKY IEK +++S IPFTIFKYAGFFQ LI
Sbjct:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETLPLSFQGVSAIIDASTTKSEDNNELLNIDWYGKLILIELSKYINIQRFIFLSILNSENYPYITLMKMKYGIEKLLKNSGIPFTIFKYAGFFQALI 152          
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Match: A0A2R4QQ19_9PHAE (NmrA domain-containing protein n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ19_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 5.150e-81
Identity = 127/155 (81.94%), Postives = 140/155 (90.32%), Query Frame = 1
Query:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYGDLTIPETLPFSFQGVTALIDASTTK---SEDNSELIHVDWYGKLIVIELAKYTQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQGLI 456
            MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNK+AANFLKEWGAEL+YGDLT+PETLP +FQGVTA+IDAST K     D+S++I VDWY KLIVIEL+K   +KRFIFLSILNSEKYPYITLM+MKYR+EK I+SS IPFTIFKYAGFFQ LI
Sbjct:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAELIYGDLTLPETLPPAFQGVTAIIDASTAKVADENDSSDIITVDWYSKLIVIELSKLINIKRFIFLSILNSEKYPYITLMKMKYRVEKLIKSSGIPFTIFKYAGFFQSLI 155          
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Match: A0A1L2F1K8_9PHAE (Ycf39 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1K8_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 4.450e-80
Identity = 126/155 (81.29%), Postives = 140/155 (90.32%), Query Frame = 1
Query:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYGDLTIPETLPFSFQGVTALIDASTTK---SEDNSELIHVDWYGKLIVIELAKYTQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQGLI 456
            MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNK+AANFLKEWGAELVYGDLT+PETLP +FQGVTA+IDA+TTK     +NS +I VDWYGKLI+IEL+K   +KRFIFLSILNSEKYPYITLM+MKYR+EK I+SS + FTIFKYAGFFQ LI
Sbjct:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAELVYGDLTLPETLPPAFQGVTAIIDAATTKVAEENNNSSIITVDWYGKLIIIELSKLINIKRFIFLSILNSEKYPYITLMKMKYRVEKLIKSSGLIFTIFKYAGFFQSLI 155          
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Match: A0A8E6D5V0_9PHAE (NmrA domain-containing protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5V0_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 2.550e-79
Identity = 123/152 (80.92%), Postives = 137/152 (90.13%), Query Frame = 1
Query:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYGDLTIPETLPFSFQGVTALIDASTTKSEDNSELIHVDWYGKLIVIELAKYTQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQGLI 456
            MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNK+AANFLKEWGAE+VYGDLT+PETLP SFQGVTA+IDASTT+SED+ EL  VDWYGKL++IEL+K+ +LKRF+FLSILN E YPYI LMQMKY IEK I +S +PF IFK AGFFQ LI
Sbjct:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAEIVYGDLTLPETLPLSFQGVTAIIDASTTRSEDSVELEDVDWYGKLMLIELSKHIKLKRFVFLSILNCENYPYIALMQMKYSIEKAITTSGLPFIIFKCAGFFQALI 152          
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Match: A0A2I4Q2M3_9PHAE (NmrA domain-containing protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2M3_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 5.610e-79
Identity = 121/152 (79.61%), Postives = 139/152 (91.45%), Query Frame = 1
Query:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYGDLTIPETLPFSFQGVTALIDASTTKSEDNSELIHVDWYGKLIVIELAKYTQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQGLI 456
            MTLLILGGTG LGRQIVRKALENGF+VRCIVRNK +ANFLKEWGAELVYGDLTIPETLP SFQGVTA+IDAST  S D+ ELI++DWYGKLI++EL+KY +++RFIFLSILN E YPYI+LM+MKY IEK +++ST+PFTIFKYAGFFQ LI
Sbjct:    1 MTLLILGGTGMLGRQIVRKALENGFEVRCIVRNKTSANFLKEWGAELVYGDLTIPETLPLSFQGVTAVIDASTRNSTDSIELINIDWYGKLIMLELSKYIKVQRFIFLSILNCEHYPYISLMKMKYGIEKLLKNSTMPFTIFKYAGFFQTLI 152          
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Match: A0A7S6UA30_9STRA (Ycf39 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA30_9STRA)

HSP 1 Score: 236 bits (603), Expect = 1.510e-75
Identity = 116/152 (76.32%), Postives = 137/152 (90.13%), Query Frame = 1
Query:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYGDLTIPETLPFSFQGVTALIDASTTKSEDNSELIHVDWYGKLIVIELAKYTQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQGLI 456
            MTLLI+GGTGTLGRQIVRKALENGF VRCIVRNK+AANFL+EWGAELVYGDLT+PETLP SFQGVTA+IDASTTK+E+ ++LI VDWYGKLI+IELAKY  ++ FIFLSILN+++YP+I+LM+MK  IE  I++  +PFTIFK AGFFQ LI
Sbjct:    1 MTLLIIGGTGTLGRQIVRKALENGFHVRCIVRNKRAANFLQEWGAELVYGDLTLPETLPISFQGVTAIIDASTTKAEEETKLIEVDWYGKLILIELAKYVHIQHFIFLSILNAKEYPFISLMRMKAGIEDIIQNCGMPFTIFKCAGFFQALI 152          
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Match: B7T1Z0_VAULI (Isoflavone reductase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Z0_VAULI)

HSP 1 Score: 224 bits (571), Expect = 1.090e-70
Identity = 107/152 (70.39%), Postives = 133/152 (87.50%), Query Frame = 1
Query:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYGDLTIPETLPFSFQGVTALIDASTTKSEDNSELIHVDWYGKLIVIELAKYTQLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQGLI 456
            MTLL++GGTGTLGRQIVRKAL+NGFQVRCIVRNK+AA FL+EWGAELVYGDLTIPETLP SFQGVTA+ID STT+ +D++++I +DWY KLI+IE+AK   +KRFIF SILN+ +YP ITLMQ+K  IEK +++S +P+TIF+  GF+Q LI
Sbjct:    1 MTLLVVGGTGTLGRQIVRKALDNGFQVRCIVRNKRAAKFLQEWGAELVYGDLTIPETLPLSFQGVTAIIDTSTTRPKDDTKMIEIDWYSKLILIEMAKRINIKRFIFFSILNASQYPSITLMQLKANIEKVLKNSGVPYTIFQCTGFYQALI 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77586.15793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S0GA69_COSCS1.490e-9594.74NmrA domain-containing protein n=35 Tax=Phaeophyce... [more]
A0A7U1AQL7_9PHAE1.010e-9293.92NmrA domain-containing protein n=3 Tax=Laminariale... [more]
A0A8F0FB09_9PHAE4.360e-9089.47NmrA domain-containing protein n=1 Tax=Desmarestia... [more]
A0A8F0JYI7_9PHAE3.590e-8482.89NmrA domain-containing protein n=1 Tax=Protohalopt... [more]
A0A2R4QQ19_9PHAE5.150e-8181.94NmrA domain-containing protein n=3 Tax=Fucaceae Ta... [more]
A0A1L2F1K8_9PHAE4.450e-8081.29Ycf39 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L... [more]
A0A8E6D5V0_9PHAE2.550e-7980.92NmrA domain-containing protein n=1 Tax=Ishige okam... [more]
A0A2I4Q2M3_9PHAE5.610e-7979.61NmrA domain-containing protein n=1 Tax=Dictyopteri... [more]
A0A7S6UA30_9STRA1.510e-7576.32Ycf39 n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]
B7T1Z0_VAULI1.090e-7070.39Isoflavone reductase n=1 Tax=Vaucheria litorea Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77586contigH-paniculata_contig77586:2..457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.1
Seed ortholog evalue6e-79
Seed eggNOG ortholog2880.D1J6Z7
Preferred nameycf39
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.5199485-CDS-H-paniculata_contig77586:1..4571622930964.5199485-CDS-H-paniculata_contig77586:1..457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77586 2..457 -
1691481530.0418634-CDS-H-paniculata_contig77586:1..4571691481530.0418634-CDS-H-paniculata_contig77586:1..457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77586 2..457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77586.15793.1prot_H-paniculata_contig77586.15793.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig77586 2..457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig77586.15793.1

>prot_H-paniculata_contig77586.15793.1 ID=prot_H-paniculata_contig77586.15793.1|Name=mRNA_H-paniculata_contig77586.15793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKKAANFLKEWGAELVYG
DLTIPETLPFSFQGVTALIDASTTKSEDNSELIHVDWYGKLIVIELAKYT
QLKRFIFLSILNSEKYPYITLMQMKYRIEKFIESSTIPFTIFKYAGFFQG
LI
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mRNA from alignment at H-paniculata_contig77586:2..457-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig77586.15793.1 ID=mRNA_H-paniculata_contig77586.15793.1|Name=mRNA_H-paniculata_contig77586.15793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig77586:2..457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATTACTTATTCTTGGTGGAACGGGAACTTTAGGGCGACAAATTGT TAGAAAAGCTTTAGAAAATGGTTTTCAGGTCCGTTGTATTGTGAGAAATA AAAAAGCTGCTAATTTTTTAAAAGAATGGGGAGCTGAATTAGTTTATGGT GATTTAACAATACCCGAAACTTTACCATTTTCTTTTCAAGGTGTTACCGC ACTAATTGATGCTTCAACTACAAAATCAGAAGATAATAGTGAACTAATAC ACGTAGATTGGTACGGTAAATTAATTGTTATCGAATTAGCCAAGTATACT CAATTAAAGCGTTTTATATTTTTATCTATTTTAAACTCTGAAAAATATCC ATATATTACCCTAATGCAAATGAAATATCGCATAGAAAAATTTATAGAAA GTTCAACAATACCTTTTACTATTTTTAAATATGCTGGATTCTTTCAAGGA CTTATC
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Coding sequence (CDS) from alignment at H-paniculata_contig77586:2..457-

>mRNA_H-paniculata_contig77586.15793.1 ID=mRNA_H-paniculata_contig77586.15793.1|Name=mRNA_H-paniculata_contig77586.15793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig77586:2..457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATTACTTATTCTTGGTGGAACGGGAACTTTAGGGCGACAAATTGT
TAGAAAAGCTTTAGAAAATGGTTTTCAGGTCCGTTGTATTGTGAGAAATA
AAAAAGCTGCTAATTTTTTAAAAGAATGGGGAGCTGAATTAGTTTATGGT
GATTTAACAATACCCGAAACTTTACCATTTTCTTTTCAAGGTGTTACCGC
ACTAATTGATGCTTCAACTACAAAATCAGAAGATAATAGTGAACTAATAC
ACGTAGATTGGTACGGTAAATTAATTGTTATCGAATTAGCCAAGTATACT
CAATTAAAGCGTTTTATATTTTTATCTATTTTAAACTCTGAAAAATATCC
ATATATTACCCTAATGCAAATGAAATATCGCATAGAAAAATTTATAGAAA
GTTCAACAATACCTTTTACTATTTTTAAATATGCTGGATTCTTTCAAGGA
CTTATCATGACATTACTTATTCTTGGTGGAACGGGAACTTTAGGGCGACA
AATTGTTAGAAAAGCTTTAGAAAATGGTTTTCAGGTCCGTTGTATTGTGA
GAAATAAAAAAGCTGCTAATTTTTTAAAAGAATGGGGAGCTGAATTAGTT
TATGGTGATTTAACAATACCCGAAACTTTACCATTTTCTTTTCAAGGTGT
TACCGCACTAATTGATGCTTCAACTACAAAATCAGAAGATAATAGTGAAC
TAATACACGTAGATTGGTACGGTAAATTAATTGTTATCGAATTAGCCAAG
TATACTCAATTAAAGCGTTTTATATTTTTATCTATTTTAAACTCTGAAAA
ATATCCATATATTACCCTAATGCAAATGAAATATCGCATAGAAAAATTTA
TAGAAAGTTCAACAATACCTTTTACTATTTTTAAATATGCTGGATTCTTT
CAAGGACTTATC
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