mRNA_H-paniculata_contig77583.15792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig77583.15792.1
Unique NamemRNA_H-paniculata_contig77583.15792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A6B7EYQ0_9PHAE (50S ribosomal protein L27 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYQ0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 4.990e-51
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTIY 273
            MAHKKGAGSTKNGRDS SKRLGVKCFHGHKVQAG+ILIRQRGETFEPGKNVGIGRDYTLYASV+G+VSFKKKR+KTFVSVVE   AT TIY
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFHGHKVQAGSILIRQRGETFEPGKNVGIGRDYTLYASVDGLVSFKKKRRKTFVSVVESAKATTTIY 91
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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A1I9LVY3_9PHAE (50S ribosomal protein L27, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY3_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.350e-50
Identity = 77/91 (84.62%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTIY 273
            MAHKKGAGSTKNGRDS+SKRLGVKCFHGHKVQAGNILIRQRG +FEPGKNVG+GRDYTLYAS+EG+VSFKK +KKT++S++E D ATKTIY
Sbjct:    1 MAHKKGAGSTKNGRDSRSKRLGVKCFHGHKVQAGNILIRQRGVSFEPGKNVGMGRDYTLYASIEGIVSFKKTKKKTYISIIELDEATKTIY 91
[Close]
BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: D1J768_ECTSI (50S ribosomal protein L27, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J768_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 5.270e-50
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTI 270
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRG +FEPGKNVG+GRDYTLYASVEGVVSFKKK KKTF+S++E +  TKTI
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGISFEPGKNVGVGRDYTLYASVEGVVSFKKKNKKTFISIIELNETTKTI 90
[Close]
BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A7T8JKF2_SCYLO (50S ribosomal protein L27, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JKF2_SCYLO)

HSP 1 Score: 162 bits (409), Expect = 5.480e-50
Identity = 79/91 (86.81%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTIY 273
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRG +FEPGKNVG+GRDYTLYA VEGVVSFKKK+KKT +S+VE D +TK IY
Sbjct:    3 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGVSFEPGKNVGVGRDYTLYACVEGVVSFKKKKKKTCISIVEVDESTKLIY 93
[Close]
BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A344PF82_9PHAE (50S ribosomal protein L27 n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF82_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.420e-47
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTI 270
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRG +FE GKNVG+GRDYTLYAS EGVVSFKKK+KKT +SVV+ D +TK+I
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGGSFEAGKNVGVGRDYTLYASTEGVVSFKKKKKKTCISVVKLDESTKSI 90
[Close]
BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A8F0F6S3_AKKLU (Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F6S3_AKKLU)

HSP 1 Score: 137 bits (346), Expect = 9.810e-41
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSV 240
            MAHKKGAGSTKNGRDSKSKRLGVKCF GHKVQAGNILIRQRG +++PG+NVGIGRDYTLYA  EG+VSFKKK KKT +SV
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHKVQAGNILIRQRGLSYKPGENVGIGRDYTLYALKEGLVSFKKKNKKTCISV 80
[Close]
BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A8F0F9K0_9PHAE (Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F9K0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 6.830e-39
Identity = 66/80 (82.50%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSV 240
            MAHKKGAGSTKNGRDSKSKRLGVKCF GH VQAGNILIRQRG +F+PG NVG+GRDYTLYA  EG+VSFKK  KKT +SV
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVQAGNILIRQRGLSFKPGSNVGVGRDYTLYALKEGLVSFKKVNKKTCISV 80
[Close]
BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A141BSB3_9PHAE (50S ribosomal protein L27, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB3_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.840e-38
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVE 246
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGH+V+AGNILIRQRG  F+PG+NVGIGRDYTLYA  EG+V FKK  K T +SV +
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVRAGNILIRQRGLKFKPGQNVGIGRDYTLYALKEGLVFFKKTTKDTSISVFD 82
[Close]
BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A0R6MBY3_UNDPI (50S ribosomal protein L27, chloroplastic n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6MBY3_UNDPI)

HSP 1 Score: 131 bits (329), Expect = 4.070e-38
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSV 240
            MAHKKGAGSTKNGRDSKSKRLGVKCF GH V+AGNILIRQRG +F+PG NVGIG+DYTLYA   G+VSFKKK+K+T +SV
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVEAGNILIRQRGLSFKPGDNVGIGKDYTLYALTAGLVSFKKKKKQTCISV 80
[Close]
BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A2R4QPT1_9PHAE (50S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPT1_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.290e-36
Identity = 62/80 (77.50%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSV 240
            MAHKKGAGSTKNGRDSK KRLGVKCFHGH+V+AGNILIRQRG TF+PG NVGIG+DYTLYA  EG+V FKK    T +S+
Sbjct:    1 MAHKKGAGSTKNGRDSKPKRLGVKCFHGHQVKAGNILIRQRGLTFKPGDNVGIGKDYTLYALKEGMVYFKKSNTTTSISI 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EYQ0_9PHAE4.990e-5190.1150S ribosomal protein L27 n=1 Tax=Cladosiphon okam... [more]
A0A1I9LVY3_9PHAE1.350e-5084.6250S ribosomal protein L27, chloroplastic n=1 Tax=P... [more]
D1J768_ECTSI5.270e-5087.7850S ribosomal protein L27, chloroplastic n=2 Tax=E... [more]
A0A7T8JKF2_SCYLO5.480e-5086.8150S ribosomal protein L27, chloroplastic n=4 Tax=S... [more]
A0A344PF82_9PHAE1.420e-4785.5650S ribosomal protein L27 n=1 Tax=Endarachne bingh... [more]
A0A8F0F6S3_AKKLU9.810e-4185.00Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2... [more]
A0A8F0F9K0_9PHAE6.830e-3982.50Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2... [more]
A0A141BSB3_9PHAE3.840e-3879.2750S ribosomal protein L27, chloroplastic n=14 Tax=... [more]
A0A0R6MBY3_UNDPI4.070e-3880.0050S ribosomal protein L27, chloroplastic n=23 Tax=... [more]
A0A2R4QPT1_9PHAE1.290e-3677.5050S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77583contigH-paniculata_contig77583:3..275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3.1e-38
Seed eggNOG ortholog2880.D1J768
Preferred namerpl27
KEGG koko:K02899
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0010033,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0211@1,KOG4600@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.4659624-CDS-H-paniculata_contig77583:2..2751622930964.4659624-CDS-H-paniculata_contig77583:2..275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77583 3..275 -
1691481530.028181-CDS-H-paniculata_contig77583:2..2751691481530.028181-CDS-H-paniculata_contig77583:2..275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77583 3..275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77583.15792.1prot_H-paniculata_contig77583.15792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig77583 3..275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig77583.15792.1

>prot_H-paniculata_contig77583.15792.1 ID=prot_H-paniculata_contig77583.15792.1|Name=mRNA_H-paniculata_contig77583.15792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKN
VGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTIY
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mRNA from alignment at H-paniculata_contig77583:3..275-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig77583.15792.1 ID=mRNA_H-paniculata_contig77583.15792.1|Name=mRNA_H-paniculata_contig77583.15792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig77583:3..275- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCACAAAAAAGGTGCTGGAAGTACAAAAAATGGCCGAGACTCTAA
ATCTAAACGTCTTGGAGTAAAATGTTTTCATGGCCATAAAGTACAAGCTG
GTAATATTTTAATAAGACAGAGAGGAGAAACCTTTGAGCCAGGAAAAAAT
GTTGGTATTGGTAGAGATTATACTTTATACGCATCAGTTGAAGGTGTAGT
AAGTTTTAAAAAGAAAAGAAAAAAAACTTTTGTTTCAGTTGTCGAACCTG
ATAACGCAACAAAAACAATTTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig77583:3..275-

>mRNA_H-paniculata_contig77583.15792.1 ID=mRNA_H-paniculata_contig77583.15792.1|Name=mRNA_H-paniculata_contig77583.15792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig77583:3..275- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCACAAAAAAGGTGCTGGAAGTACAAAAAATGGCCGAGACTCTAA
ATCTAAACGTCTTGGAGTAAAATGTTTTCATGGCCATAAAGTACAAGCTG
GTAATATTTTAATAAGACAGAGAGGAGAAACCTTTGAGCCAGGAAAAAAT
GTTGGTATTGGTAGAGATTATACTTTATACGCATCAGTTGAAGGTGTAGT
AAGTTTTAAAAAGAAAAGAAAAAAAACTTTTGTTTCAGTTGTCGAACCTG
ATAACGCAACAAAAACAATTTATATGGCTCACAAAAAAGGTGCTGGAAGT
ACAAAAAATGGCCGAGACTCTAAATCTAAACGTCTTGGAGTAAAATGTTT
TCATGGCCATAAAGTACAAGCTGGTAATATTTTAATAAGACAGAGAGGAG
AAACCTTTGAGCCAGGAAAAAATGTTGGTATTGGTAGAGATTATACTTTA
TACGCATCAGTTGAAGGTGTAGTAAGTTTTAAAAAGAAAAGAAAAAAAAC
TTTTGTTTCAGTTGTCGAACCTGATAACGCAACAAAAACAATTTAT
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