mRNA_H-paniculata_contig77583.15792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig77583.15792.1
Unique Name	mRNA_H-paniculata_contig77583.15792.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A6B7EYQ0_9PHAE (50S ribosomal protein L27 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYQ0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 4.990e-51
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 1

Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTIY 273
            MAHKKGAGSTKNGRDS SKRLGVKCFHGHKVQAG+ILIRQRGETFEPGKNVGIGRDYTLYASV+G+VSFKKKR+KTFVSVVE   AT TIY
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFHGHKVQAGSILIRQRGETFEPGKNVGIGRDYTLYASVDGLVSFKKKRRKTFVSVVESAKATTTIY 91

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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A1I9LVY3_9PHAE (50S ribosomal protein L27, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY3_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.350e-50
Identity = 77/91 (84.62%), Postives = 87/91 (95.60%), Query Frame = 1

Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTIY 273
            MAHKKGAGSTKNGRDS+SKRLGVKCFHGHKVQAGNILIRQRG +FEPGKNVG+GRDYTLYAS+EG+VSFKK +KKT++S++E D ATKTIY
Sbjct:    1 MAHKKGAGSTKNGRDSRSKRLGVKCFHGHKVQAGNILIRQRGVSFEPGKNVGMGRDYTLYASIEGIVSFKKTKKKTYISIIELDEATKTIY 91

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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: D1J768_ECTSI (50S ribosomal protein L27, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J768_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 5.270e-50
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1

Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTI 270
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRG +FEPGKNVG+GRDYTLYASVEGVVSFKKK KKTF+S++E +  TKTI
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGISFEPGKNVGVGRDYTLYASVEGVVSFKKKNKKTFISIIELNETTKTI 90

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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A7T8JKF2_SCYLO (50S ribosomal protein L27, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JKF2_SCYLO)

HSP 1 Score: 162 bits (409), Expect = 5.480e-50
Identity = 79/91 (86.81%), Postives = 85/91 (93.41%), Query Frame = 1

Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTIY 273
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRG +FEPGKNVG+GRDYTLYA VEGVVSFKKK+KKT +S+VE D +TK IY
Sbjct:    3 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGVSFEPGKNVGVGRDYTLYACVEGVVSFKKKKKKTCISIVEVDESTKLIY 93

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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A344PF82_9PHAE (50S ribosomal protein L27 n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF82_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.420e-47
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 1

Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTI 270
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRG +FE GKNVG+GRDYTLYAS EGVVSFKKK+KKT +SVV+ D +TK+I
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGGSFEAGKNVGVGRDYTLYASTEGVVSFKKKKKKTCISVVKLDESTKSI 90

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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A8F0F6S3_AKKLU (Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F6S3_AKKLU)

HSP 1 Score: 137 bits (346), Expect = 9.810e-41
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1

Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSV 240
            MAHKKGAGSTKNGRDSKSKRLGVKCF GHKVQAGNILIRQRG +++PG+NVGIGRDYTLYA  EG+VSFKKK KKT +SV
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHKVQAGNILIRQRGLSYKPGENVGIGRDYTLYALKEGLVSFKKKNKKTCISV 80

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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A8F0F9K0_9PHAE (Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F9K0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 6.830e-39
Identity = 66/80 (82.50%), Postives = 71/80 (88.75%), Query Frame = 1

Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSV 240
            MAHKKGAGSTKNGRDSKSKRLGVKCF GH VQAGNILIRQRG +F+PG NVG+GRDYTLYA  EG+VSFKK  KKT +SV
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVQAGNILIRQRGLSFKPGSNVGVGRDYTLYALKEGLVSFKKVNKKTCISV 80

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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A141BSB3_9PHAE (50S ribosomal protein L27, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB3_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.840e-38
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1

Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSVVE 246
            MAHKKGAGSTKNGRDSKSKRLGVKCFHGH+V+AGNILIRQRG  F+PG+NVGIGRDYTLYA  EG+V FKK  K T +SV +
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVRAGNILIRQRGLKFKPGQNVGIGRDYTLYALKEGLVFFKKTTKDTSISVFD 82

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BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A0R6MBY3_UNDPI (50S ribosomal protein L27, chloroplastic n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6MBY3_UNDPI)

HSP 1 Score: 131 bits (329), Expect = 4.070e-38
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1

Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSV 240
            MAHKKGAGSTKNGRDSKSKRLGVKCF GH V+AGNILIRQRG +F+PG NVGIG+DYTLYA   G+VSFKKK+K+T +SV
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVEAGNILIRQRGLSFKPGDNVGIGKDYTLYALTAGLVSFKKKKKQTCISV 80

[Close]

BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Match: A0A2R4QPT1_9PHAE (50S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPT1_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.290e-36
Identity = 62/80 (77.50%), Postives = 69/80 (86.25%), Query Frame = 1

Query:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKNVGIGRDYTLYASVEGVVSFKKKRKKTFVSV 240
            MAHKKGAGSTKNGRDSK KRLGVKCFHGH+V+AGNILIRQRG TF+PG NVGIG+DYTLYA  EG+V FKK    T +S+
Sbjct:    1 MAHKKGAGSTKNGRDSKPKRLGVKCFHGHQVKAGNILIRQRGLTFKPGDNVGIGKDYTLYALKEGMVYFKKSNTTTSISI 80

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig77583.15792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6B7EYQ0_9PHAE	4.990e-51	90.11	50S ribosomal protein L27 n=1 Tax=Cladosiphon okam...	[more]
A0A1I9LVY3_9PHAE	1.350e-50	84.62	50S ribosomal protein L27, chloroplastic n=1 Tax=P...	[more]
D1J768_ECTSI	5.270e-50	87.78	50S ribosomal protein L27, chloroplastic n=2 Tax=E...	[more]
A0A7T8JKF2_SCYLO	5.480e-50	86.81	50S ribosomal protein L27, chloroplastic n=4 Tax=S...	[more]
A0A344PF82_9PHAE	1.420e-47	85.56	50S ribosomal protein L27 n=1 Tax=Endarachne bingh...	[more]
A0A8F0F6S3_AKKLU	9.810e-41	85.00	Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2...	[more]
A0A8F0F9K0_9PHAE	6.830e-39	82.50	Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2...	[more]
A0A141BSB3_9PHAE	3.840e-38	79.27	50S ribosomal protein L27, chloroplastic n=14 Tax=...	[more]
A0A0R6MBY3_UNDPI	4.070e-38	80.00	50S ribosomal protein L27, chloroplastic n=23 Tax=...	[more]
A0A2R4QPT1_9PHAE	1.290e-36	77.50	50S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig77583	contig	H-paniculata_contig77583:3..275 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	164.1
Seed ortholog evalue	3.1e-38
Seed eggNOG ortholog	2880.D1J768
Preferred name	rpl27
KEGG ko	ko:K02899
KEGG Pathway	ko03010,map03010
KEGG Module	M00178
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0010033,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896
EggNOG free text desc.	structural constituent of ribosome
EggNOG OGs	COG0211@1,KOG4600@2759
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko03011
Exons	1
Model size	273
Cds size	273
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930964.4659624-CDS-H-paniculata_contig77583:2..275	1622930964.4659624-CDS-H-paniculata_contig77583:2..275	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig77583 3..275 -
1691481530.028181-CDS-H-paniculata_contig77583:2..275	1691481530.028181-CDS-H-paniculata_contig77583:2..275	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig77583 3..275 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig77583.15792.1	prot_H-paniculata_contig77583.15792.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig77583 3..275 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig77583:3..275-
coding sequence from alignment at H-paniculata_contig77583:3..275-

protein sequence of mRNA_H-paniculata_contig77583.15792.1

>prot_H-paniculata_contig77583.15792.1 ID=prot_H-paniculata_contig77583.15792.1|Name=mRNA_H-paniculata_contig77583.15792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MAHKKGAGSTKNGRDSKSKRLGVKCFHGHKVQAGNILIRQRGETFEPGKN
VGIGRDYTLYASVEGVVSFKKKRKKTFVSVVEPDNATKTIY

mRNA from alignment at H-paniculata_contig77583:3..275-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig77583.15792.1 ID=mRNA_H-paniculata_contig77583.15792.1|Name=mRNA_H-paniculata_contig77583.15792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig77583:3..275- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCACAAAAAAGGTGCTGGAAGTACAAAAAATGGCCGAGACTCTAA
ATCTAAACGTCTTGGAGTAAAATGTTTTCATGGCCATAAAGTACAAGCTG
GTAATATTTTAATAAGACAGAGAGGAGAAACCTTTGAGCCAGGAAAAAAT
GTTGGTATTGGTAGAGATTATACTTTATACGCATCAGTTGAAGGTGTAGT
AAGTTTTAAAAAGAAAAGAAAAAAAACTTTTGTTTCAGTTGTCGAACCTG
ATAACGCAACAAAAACAATTTAT

Coding sequence (CDS) from alignment at H-paniculata_contig77583:3..275-

>mRNA_H-paniculata_contig77583.15792.1 ID=mRNA_H-paniculata_contig77583.15792.1|Name=mRNA_H-paniculata_contig77583.15792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig77583:3..275- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCACAAAAAAGGTGCTGGAAGTACAAAAAATGGCCGAGACTCTAA
ATCTAAACGTCTTGGAGTAAAATGTTTTCATGGCCATAAAGTACAAGCTG
GTAATATTTTAATAAGACAGAGAGGAGAAACCTTTGAGCCAGGAAAAAAT
GTTGGTATTGGTAGAGATTATACTTTATACGCATCAGTTGAAGGTGTAGT
AAGTTTTAAAAAGAAAAGAAAAAAAACTTTTGTTTCAGTTGTCGAACCTG
ATAACGCAACAAAAACAATTTATATGGCTCACAAAAAAGGTGCTGGAAGT
ACAAAAAATGGCCGAGACTCTAAATCTAAACGTCTTGGAGTAAAATGTTT
TCATGGCCATAAAGTACAAGCTGGTAATATTTTAATAAGACAGAGAGGAG
AAACCTTTGAGCCAGGAAAAAATGTTGGTATTGGTAGAGATTATACTTTA
TACGCATCAGTTGAAGGTGTAGTAAGTTTTAAAAAGAAAAGAAAAAAAAC
TTTTGTTTCAGTTGTCGAACCTGATAACGCAACAAAAACAATTTAT