mRNA_H-paniculata_contig7757.15789.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7757.15789.1
Unique NamemRNA_H-paniculata_contig7757.15789.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7757.15789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7757contigH-paniculata_contig7757:1858..2519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size664
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.371904-UTR-H-paniculata_contig7757:1857..21171622930964.371904-UTR-H-paniculata_contig7757:1857..2117Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7757 1858..2117 +
1691481530.0079296-UTR-H-paniculata_contig7757:1857..21171691481530.0079296-UTR-H-paniculata_contig7757:1857..2117Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7757 1858..2117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.3841572-CDS-H-paniculata_contig7757:2117..25191622930964.3841572-CDS-H-paniculata_contig7757:2117..2519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 2118..2519 +
1691481530.0175476-CDS-H-paniculata_contig7757:2117..25191691481530.0175476-CDS-H-paniculata_contig7757:2117..2519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 2118..2519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7757.15789.1prot_H-paniculata_contig7757.15789.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7757 2118..2519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7757.15789.1

>prot_H-paniculata_contig7757.15789.1 ID=prot_H-paniculata_contig7757.15789.1|Name=mRNA_H-paniculata_contig7757.15789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MIPSFSLEDVEGNTYIYLRSNHLPTHHIPHTTYNTPHKYTSRRQKSNTVH
TKKTLPPPENRSRTKKERPTNTRYAPFITHRKHTSIQHQTSNVHDKCSSS
LIMTRMIKTKKQRTKKTKKTLPFLGDVRNRCAQL
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mRNA from alignment at H-paniculata_contig7757:1858..2519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7757.15789.1 ID=mRNA_H-paniculata_contig7757.15789.1|Name=mRNA_H-paniculata_contig7757.15789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=662bp|location=Sequence derived from alignment at H-paniculata_contig7757:1858..2519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCTGTTTGTTCTGTAAGGTCTACTACGCTGCCCGTCGCCACACGGGTA
CAACAAGCAACAGGCAAGCACGCTACAGTACAACGACAGACTATACATTG
GAATTACGCGTTTTACTCTTGTCTCCAACCGGTCTTGTCTTGTGCCACGA
TTGATCACCATGATGATGACAACACATATACCTAGGGTGATGAAAAAACA
AAACTCCGCGGTTTTCAATAAAACCCCAGGAAACATAATAACAGATGAAG
AGGGTAGCAAATGATTCCGTCTTTCTCCCTAGAGGACGTGGAGGGAAACA
CCTACATCTATTTGCGCTCAAACCACCTCCCAACACACCACATACCACAC
ACCACATACAACACACCACACAAATACACCAGCAGACGTCAAAAATCGAA
CACTGTACATACAAAAAAAACACTGCCGCCACCAGAAAATCGAAGCAGAA
CAAAAAAAGAGAGACCAACAAACACACGATACGCCCCGTTCATCACGCAT
CGAAAGCACACTAGTATCCAGCATCAAACATCCAACGTCCATGACAAGTG
TAGTAGTAGTCTTATCATGACAAGAATGATCAAAACCAAAAAACAACGAA
CAAAAAAAACAAAAAAAACACTTCCGTTTCTGGGGGACGTGCGTAATCGA
TGCGCGCAGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig7757:1858..2519+

>mRNA_H-paniculata_contig7757.15789.1 ID=mRNA_H-paniculata_contig7757.15789.1|Name=mRNA_H-paniculata_contig7757.15789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig7757:1858..2519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTCCGTCTTTCTCCCTAGAGGACGTGGAGGGAAACACCTACATCTA
TTTGCGCTCAAACCACCTCCCAACACACCACATACCACACACCACATACA
ACACACCACACAAATACACCAGCAGACGTCAAAAATCGAACACTGTACAT
ACAAAAAAAACACTGCCGCCACCAGAAAATCGAAGCAGAACAAAAAAAGA
GAGACCAACAAACACACGATACGCCCCGTTCATCACGCATCGAAAGCACA
CTAGTATCCAGCATCAAACATCCAACGTCCATGACAAGTGTAGTAGTAGT
CTTATCATGACAAGAATGATCAAAACCAAAAAACAACGAACAAAAAAAAC
AAAAAAAACACTTCCGTTTCTGGGGGACGTGCGTAATCGATGCGCGCAGT
TGATGATTCCGTCTTTCTCCCTAGAGGACGTGGAGGGAAACACCTACATC
TATTTGCGCTCAAACCACCTCCCAACACACCACATACCACACACCACATA
CAACACACCACACAAATACACCAGCAGACGTCAAAAATCGAACACTGTAC
ATACAAAAAAAACACTGCCGCCACCAGAAAATCGAAGCAGAACAAAAAAA
GAGAGACCAACAAACACACGATACGCCCCGTTCATCACGCATCGAAAGCA
CACTAGTATCCAGCATCAAACATCCAACGTCCATGACAAGTGTAGTAGTA
GTCTTATCATGACAAGAATGATCAAAACCAAAAAACAACGAACAAAAAAA
ACAAAAAAAACACTTCCGTTTCTGGGGGACGTGCGTAATCGATGCGCGCA
GTTG
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