mRNA_H-paniculata_contig7757.15791.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7757.15791.1
Unique NamemRNA_H-paniculata_contig7757.15791.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7757.15791.1 vs. uniprot
Match: D8LN81_ECTSI (TBC1 domain family member 23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN81_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.460e-22
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:  109 GRGFGAAKILAEKLHARGFPYVSILEGGMEGVINYLKTEGIPLEPTVINHDPDMYKAWRE 288
            G GFGAAK  A +LHARGFPYVSILEGGMEG++ +LK EGIPLEPTVI+HDP+ Y+ WRE
Sbjct:  487 GEGFGAAKAFARRLHARGFPYVSILEGGMEGIVQHLKKEGIPLEPTVIDHDPEAYQRWRE 546
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7757.15791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN81_ECTSI5.460e-2275.00TBC1 domain family member 23 n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7757contigH-paniculata_contig7757:5545..10574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue2.7e-20
Seed eggNOG ortholog2880.D8LN81
Preferred nameTBC1D23
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001667,GO:0001817,GO:0001819,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007417,GO:0007420,GO:0008047,GO:0008150,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0030707,GO:0030855,GO:0031175,GO:0031347,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032675,GO:0032680,GO:0032755,GO:0040011,GO:0042147,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048568,GO:0048583,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050727,GO:0050789,GO:0050790,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060322,GO:0060429,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0080134,GO:0090130,GO:0090132,GO:0098772,GO:0098791,GO:0120036,GO:1903555,GO:1990403
EggNOG free text desc.embryonic brain development
EggNOG OGsKOG3636@1,KOG3636@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size573
Cds size570
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7757.15791.1prot_H-paniculata_contig7757.15791.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7757 5547..10574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.2400484-CDS-H-paniculata_contig7757:5546..55821622930964.2400484-CDS-H-paniculata_contig7757:5546..5582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 5547..5582 -
1691481529.9546845-CDS-H-paniculata_contig7757:5546..55821691481529.9546845-CDS-H-paniculata_contig7757:5546..5582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 5547..5582 -
1622930964.2579973-CDS-H-paniculata_contig7757:5892..59911622930964.2579973-CDS-H-paniculata_contig7757:5892..5991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 5893..5991 -
1691481529.9693537-CDS-H-paniculata_contig7757:5892..59911691481529.9693537-CDS-H-paniculata_contig7757:5892..5991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 5893..5991 -
1622930964.2759888-CDS-H-paniculata_contig7757:6378..65831622930964.2759888-CDS-H-paniculata_contig7757:6378..6583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 6379..6583 -
1691481529.981541-CDS-H-paniculata_contig7757:6378..65831691481529.981541-CDS-H-paniculata_contig7757:6378..6583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 6379..6583 -
1622930964.2919393-CDS-H-paniculata_contig7757:9774..98721622930964.2919393-CDS-H-paniculata_contig7757:9774..9872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 9775..9872 -
1691481529.989538-CDS-H-paniculata_contig7757:9774..98721691481529.989538-CDS-H-paniculata_contig7757:9774..9872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 9775..9872 -
1622930964.3106513-CDS-H-paniculata_contig7757:10442..105741622930964.3106513-CDS-H-paniculata_contig7757:10442..10574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 10443..10574 -
1691481529.999224-CDS-H-paniculata_contig7757:10442..105741691481529.999224-CDS-H-paniculata_contig7757:10442..10574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 10443..10574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7757.15791.1

>prot_H-paniculata_contig7757.15791.1 ID=prot_H-paniculata_contig7757.15791.1|Name=mRNA_H-paniculata_contig7757.15791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
EDWVTLSDQWEGTDARGRAGNTPPRGEGRAGSSTREGRGFGAAKILAEKL
HARGFPYVSILEGGMEGVINYLKTEGIPLEPTVINHDPDMYKAWREGACA
LHSFGGKVGAGGTPLVNRRVAGERFDCRGYTLVDAGDDESRITMRTDNSH
TNNKTWRGAEAAAAGGQGGLRLGVMAKLARIREGVNRGVG
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mRNA from alignment at H-paniculata_contig7757:5545..10574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7757.15791.1 ID=mRNA_H-paniculata_contig7757.15791.1|Name=mRNA_H-paniculata_contig7757.15791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5030bp|location=Sequence derived from alignment at H-paniculata_contig7757:5545..10574- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGATTGGGTGACGCTTTCGGATCAGTGGGAAGGTACCGATGCTAGGGG
CCGAGCTGGTAACACACCCCCACGGGGCGAAGGACGGGCAGGGAGCTCTA
CTCGAGAGGGGCGCGGCTTTGGAGCAGCCAAGGTAGGCACACAGGGGTTA
TCAACTTTGGATCATGATGTATATGTAGCCAGCTGCGACTGTTACTCCGA
CTGTTAATCAATACGTGCACGAATATCATCAGCGTGGAGATAGACATTGG
ATGTTGTTACTAGACCTATACAAGTCAAACGATGCCAGGCTAGACGACGG
CAGGGTGACCGTTTAGCTGCGGTTCTTGTGTGGGCGCAGGTGTGTTTTGG
TGTTTTGGGTAATTGAGCAAGTTGAATACTCACCTCTTTGTCGTTTTATT
ATAGACGGAATTGTCATGTTTGTCTACGTTACATGGTTGATATTTTGCTT
CCCCCCCCCCCGTAATTATGAGGAGGTTTGACGAGACGGTTGTCTAAATT
GAAAATGTAGACAGTACCAATAGTCTTGAGAGCAGAAACATCGATTAGTA
CGACAATGATTGTGGTGGTGGTGGTGGTGGTGGTGGTTGTGGTTGTTGTG
GTTGTTGTTGTTGTTGTTGCCGATGAAAAACGACCGAAATATCCGAATTC
ATCCGCCGCTTCCTTGCTCCGTTTTTTTCTGTTCTTCTCTCCTGGGGTAT
AGATTCTTGCCGAGAAACTACATGCTCGCGGCTTCCCTTATGTGTCCATC
CTCGAAGGGGGCATGGAAGGAGTGATCAACTACCTCAAGACCGAGGGCAT
GTGAGATGAGATGAGATGAGATGAGTTCTCGTGGCGTGGCGTGGCGTGGC
CTGACTCCATACCATGTTATCTCCCCTTCACACGAGAAGGACTACACGCA
CTGTAACTTGTGATTTAATTTACTCACTGTGTGATACTAGTGACAGAGTG
TGACACCGTGACACTGCATTTGTATGTTGGTAGGTCGTATGCTGTAACTG
TGGGTGCCAGCCTTGGCTATTCCTGGCACGCCTTCCCGTCTGTGCGAGAA
CTGTGGGTCTCTCGAGTCCTTGCCCAATCCTATCCGGGTTACTGCCATAC
TCCTGGTAGTAGTTGTGAGTGTTACACCGCCCTTCCACTTGTCACAACGT
CACACAATTAGCACAATCACGTCCGATCACAGCTAACCAAGCCAGACCCC
CGTTCACAAGGCACGTGCCTCGCGTCGTTATTTTTTTAATATATTTATTT
GTCGTTACCCCCCCCTGGCGTTTCTGTCAGCGAAAAAAATATCGACTTTT
GATTTAGTTCCTGTATAACTGTAAGTACTACATATTATTATACGGTATGA
AGTATTTACACTTACAGTAGCTGCTCTGTTGATACTGTTATTAGTTAGTT
AGGTGGGTAAGCACTGCATTCTCGTTTAACCTTGGTGAGTCCGATCGGAT
CAATGGTGTAGGCTTCGTGTTCTGTAGGCTTTCCTCCCCCTACGTTAAGC
TAAGCTAATCTGATAAACCAAGCAAAGCAAGTAAAAGGTGACGAACATGG
GGGCTCACCGTACCGAATTATGCGCGAGTACCGTAACGACTGTATGTGAA
ATGGGAAATATGCTGAGGAGGAAATATATATGTGTGCCTCGAAAATGTGT
AATGCTTGAGGAGTGAGAGTGTATGTGTATATATATATATGTATATATAT
ATATTTTAGTGTATAAAGCATAATCAAAATCGAAGGAGGGAAGGAGGGAA
GGAGGGTGTTGCTATAATATTATGGTCATTATTTTGGGCAGAACTAGGTG
GTGATGGTCACGTCATGATCTATTATCTGTTGGTTCGCTCAGCCAAGCCC
CGTTTTTTTGTTTTGTCTTGTATTTATGTATCTAGTATGCATGTATTTAT
CTATCTATCTATCTATCTATCCATATTTTATATTCATGATACATACTATA
CATTCCAACTGTCGGAACTATTTTGCAACGCCTCACTTCAAAACAACAGA
AGAAGGACAGCGGAAAAGGTTTTTACCTCAGCCTTCCGGGGTTACAAAAA
AAACAAAACAAAAAAAACCCAACAGAAGAAGGGGTCCAAGACTCGACGCT
TCGATTGTTTCAAAGCAAAATCTTTTCATCATTATCGCGAATAATATGAA
TATTGCAACGCTTCGCTTCAAAACAACAAAAGAAGAAAGAGTCCAAGACT
CCAACCTTCGACTGATTGTCCCAAAGCATCATCATCATCATCATCATCAT
CGCGACTAAAATGAATGCGATACTCATTAGTCGAACAGTCCTCAAAAGTC
CATGCTGTCGATTTGTGGGTTTAATTCCAAAACCCGCGACATTCTTCATC
GATGGATGAAAGACCTTCGTCCGAGCTGTGTTCTTTTTCTGAGTTCCGCT
GGCGGCTAACGTTGGGTCCAGTGGAGTGGGGTATGCGTTTGCTTTCGTCC
CAGAGACTTGACTTCACGCCTCATGAACACTGCCCGTCATGGACAGCACA
ACAATTTGGATTGCATACTGGATACATGCGTAGATAAATATATGTTATCT
ATCTATCTAGTACAAATAAATTTCTATCCAGTATGCATGTATGTATGTAT
GTAATCTATTTATCTACTCTATCCCCTAAATATTGTACTTTAATAATATC
TCCGATTTTTTTAATTTAATTTTAATCTTTTTATTTTATTTTTATTTAAT
CCCTACATGTGGTCAACTTTCAATACGAAACAAACGCTGTGAAAGAAACC
TCTCGGCCCGAAAAAAACGAGCATTTTGGGAGTAGTAGTTGCTTCTTGCA
AAAAAAAAATTCATTTCTTTCTCCCAACCATTGTGACGTTTTTTTTTGTT
TTTTTTTGGAAATGGCAAATGACGCCAAAACAGCAGGATCGGTCGAAAAC
TGCTTGATGACACTTGCGCGGCGATAACGTTGCAGCAAAATCTCTGATGA
CGAAACGGTTTTGTTGTGTTAGATTTCTTGGGGAAATTTCGTCTAAAATC
CGTCCTATTCGCACTGTCGAGATCAACGTTTTCCCTGCCATTTCTAGCTG
ATTTGTCTTTTGTAGGGATCACGGTGCAAGCCAAAATCCTTAGGTGTGTG
GGGTTACATGTACGTTAAATACCATTCCTTTTCGTATTGAACTCTAGACT
ACGTTATATACCACCCCCCTTGTGGGCTGTTTTGAGACAGTAGACATCGA
CAATGAAGACATATACACATTCGGACCCTGATTTTCGTGTGAACGATATT
CGAATGAGTGTGTTTGACTTCAATAGCCACAACTTCCTGGCGATTTATAC
CCCAAATCCACTAAGCTCACACTCAATTTATTCCTTAGGTTTCGAAAGGT
ATACTTGGATTTTGTTTTTTTGGTGGATCTCAAATCTGCGAAAACTATTG
CGAAAAGACCAATAAAAACTCAGACTCATGTCACAGGAGAACTTTGGAAA
TAACACCTCCAATATGGCCTTTTTTTGGACCGAGTATTTTGTATTTCACG
ATGTTTGTCTTGGTTGTAAAAGTTGACCGTTTTACTTTTTCTTTTGGGGA
CCAACTCCGAAAACATGTAGAATTCTAATTATATTTTTTTTAAAAGAAGG
AGGAAGCTTAAGTGCCTCTGTGAACAAGACGTACTGTGCCTCGTGAGACA
GAAGAGCTTTGTTTCTATGTGTGTACTTTTATATTCGTCGGTCTGTCAAA
ATCCACGATCGTCTTCAAATTTGTTAGCTATATCTGTGTGTCCTGTTTGT
CCTTCGTATCGTCCAAGTCTTATATGGAAACCCGGTAGAGAGGCCACGGC
TACGCCAGTGGAGTATATCTCTCCCTCCCCCCCCTGTTGCCCTCATCATC
ATCACCGTTACGTTAGCGTGATAAATGAATAAAATATTATGCTAACAAGT
GTAACATGTATATACGCCCAACAAACTCTCATTTTTTCATCGGTGTACCT
GATCTTTGACATACGCACGGACACGAAACGGAATAATCAAGCCCGCTGGA
GCCAACGGTCATCAACCATGACCCAGATATGTACAAGGCGTGGAGGGAGG
GGGCATGCGCCCTGCACTCATTTGGGGGCAAGGTTGGGGCGGGGGGCACC
CCGCTCGTCAATAGGAGAGTAGCTGGAGAACGGTTCGATTGCCGTGGCTA
TACCCTTGTGGATGCTGGTGATGATGAGTCTCGAATCACCATGCGGGTAA
GCCGTGTCGTGTCGTGTCGTGTGCTGTAATGTTATGTACCGTGTTGTTCT
GTTAGTCGTGTTGAGGTTTTTCTCCCACTCTCTTTCTCAATGTTCATCGT
GTGTATTGGATTCACTGGATTGATTGATTTTCTTGGGTTATGGTTGTTGT
GCTTATGCTTGTGCTTGTAGTTGTGCTGCTGCTGCTGCTGCTGCTTCACT
CGTAGTGGAGTATTCATCATCATTCAGTCACGTGTTAGTGTTAGTGAATT
ACATGGTGGGGGTGATGATGACAGTGATGATGTTGTCTTGATCGCTGATA
GCAGTAGCAACAATAGCAACAACAACAATGACCACGAGACATTTTCGCAT
GCTTTGTCTTGGTCCATTCCCAACAACAAGCAGACTGACAATAGTCATAC
CAACAACAAGACTTGGCGAGGCGCGGAGGCAGCCGCCGCGGGCGGGCAAG
GAGGTCTGAGGCTCGGAGTCATGGCAAAACTGGTGAGAGAAGTACATGTA
GCGTACAGCAGATAGCGCTGCAGGACAGACAGACAGACAGACAGATAGAT
AGATAGATAGATAGATAGATAGATAGATGTATACACAATTAAGAGATGAA
TGTATCCTTGACACCTTCTTGGACTGTCCGATTTTAGAATACAACCGCAT
TTCAAATTAATATTCTATTTTAGAGCTGGAAGATTGTGGTTGGCTAAAGG
TTGCACGTGCTGTATATGAAGGCGTTTTTATTACTAGAGACAAAATGAAA
ATCTTCATTCGAGGTGTGAACTGCTCGAACCATGACCCGCAGGCGCGAAT
ACGGGAGGGAGTCAACCGGGGAGTGGGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig7757:5545..10574-

>mRNA_H-paniculata_contig7757.15791.1 ID=mRNA_H-paniculata_contig7757.15791.1|Name=mRNA_H-paniculata_contig7757.15791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig7757:5545..10574- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGATTGGGTGACGCTTTCGGATCAGTGGGAAGGTACCGATGCTAGGGG
CCGAGCTGGTAACACACCCCCACGGGGCGAAGGACGGGCAGGGAGCTCTA
CTCGAGAGGGGCGCGGCTTTGGAGCAGCCAAGGAGGATTGGGTGACGCTT
TCGGATCAGTGGGAAGGTACCGATGCTAGGGGCCGAGCTGGTAACACACC
CCCACGGGGCGAAGGACGGGCAGGGAGCTCTACTCGAGAGGGGCGCGGCT
TTGGAGCAGCCAAGATTCTTGCCGAGAAACTACATGCTCGCGGCTTCCCT
TATGTGTCCATCCTCGAAGGGGGCATGGAAGGAGTGATCAACTACCTCAA
GACCGAGGGCATATTCTTGCCGAGAAACTACATGCTCGCGGCTTCCCTTA
TGTGTCCATCCTCGAAGGGGGCATGGAAGGAGTGATCAACTACCTCAAGA
CCGAGGGCATCCCGCTGGAGCCAACGGTCATCAACCATGACCCAGATATG
TACAAGGCGTGGAGGGAGGGGGCATGCGCCCTGCACTCATTTGGGGGCAA
GGTTGGGGCGGGGGGCACCCCGCTCGTCAATAGGAGAGTAGCTGGAGAAC
GGTTCGATTGCCGTGGCTATACCCTTGTGGATGCTGGTGATGATGAGTCT
CGAATCACCATGCGGCCCGCTGGAGCCAACGGTCATCAACCATGACCCAG
ATATGTACAAGGCGTGGAGGGAGGGGGCATGCGCCCTGCACTCATTTGGG
GGCAAGGTTGGGGCGGGGGGCACCCCGCTCGTCAATAGGAGAGTAGCTGG
AGAACGGTTCGATTGCCGTGGCTATACCCTTGTGGATGCTGGTGATGATG
AGTCTCGAATCACCATGCGGACTGACAATAGTCATACCAACAACAAGACT
TGGCGAGGCGCGGAGGCAGCCGCCGCGGGCGGGCAAGGAGGTCTGAGGCT
CGGAGTCATGGCAAAACTGACTGACAATAGTCATACCAACAACAAGACTT
GGCGAGGCGCGGAGGCAGCCGCCGCGGGCGGGCAAGGAGGTCTGAGGCTC
GGAGTCATGGCAAAACTGGCGCGAATACGGGAGGGAGTCAACCGGGGAGT
GGGGGCGCGAATACGGGAGGGAGTCAACCGGGGAGTGGGG
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