mRNA_H-paniculata_contig7757.15790.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7757.15790.1
Unique NamemRNA_H-paniculata_contig7757.15790.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7757.15790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7757contigH-paniculata_contig7757:4012..5630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size515
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7757.15790.1prot_H-paniculata_contig7757.15790.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7757 4012..5630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.1510656-CDS-H-paniculata_contig7757:4011..41461622930964.1510656-CDS-H-paniculata_contig7757:4011..4146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 4012..4146 -
1691481529.921574-CDS-H-paniculata_contig7757:4011..41461691481529.921574-CDS-H-paniculata_contig7757:4011..4146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 4012..4146 -
1622930964.1709297-CDS-H-paniculata_contig7757:4472..46671622930964.1709297-CDS-H-paniculata_contig7757:4472..4667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 4473..4667 -
1691481529.9300213-CDS-H-paniculata_contig7757:4472..46671691481529.9300213-CDS-H-paniculata_contig7757:4472..4667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 4473..4667 -
1622930964.195783-CDS-H-paniculata_contig7757:5447..56301622930964.195783-CDS-H-paniculata_contig7757:5447..5630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 5448..5630 -
1691481529.94281-CDS-H-paniculata_contig7757:5447..56301691481529.94281-CDS-H-paniculata_contig7757:5447..5630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7757 5448..5630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7757.15790.1

>prot_H-paniculata_contig7757.15790.1 ID=prot_H-paniculata_contig7757.15790.1|Name=mRNA_H-paniculata_contig7757.15790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MKIFIRGVNCSNHDPQARIREGVNRGVGTVARTGVWAVEQGAGGMETVAR
TSAWAVEKGAEGVGNVAMSGARAVMDVVLEDISGGTSGSRTSAANSDENV
QGDSETKNCGEEITESRALGLDQGAETGVWAVKERAQILLPFSIGDKNIV
EGGALSYESTPRDGQGEESKS
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mRNA from alignment at H-paniculata_contig7757:4012..5630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7757.15790.1 ID=mRNA_H-paniculata_contig7757.15790.1|Name=mRNA_H-paniculata_contig7757.15790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1619bp|location=Sequence derived from alignment at H-paniculata_contig7757:4012..5630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAATCTTCATTCGAGGTGTGAACTGCTCGAACCATGACCCGCAGGC
GCGAATACGGGAGGGAGTCAACCGGGGAGTGGGGACCGTTGCTAGGACCG
GTGTTTGGGCCGTGGAGCAGGGCGCGGGAGGGATGGAAACCGTTGCCCGG
ACCAGTGCTTGGGCTGTAGAGAAAGGCGCTGAGGTGCGTATCATAAATGA
ACATGTACGACTTGCTTTTTTTTTTTTTTGGTCTATTGTCGTTAGGTCCC
GTAGGTCGCAGAGTACATATCATATCGGACTCACAGCTCTAGCTGACATA
GAGTGTCTAATACTTTCTTAGCATTTTATGCATGCGTGACAGAACGTGAT
CGCTGTAATCGACAATAGTATACATTTTTTTTTGTGTGTTTTAGGTATAT
GTAGCCTCTCTTTTGCAGTGGTTTTGGCAAGCGGTGTTCCTGTTACACTC
GGACATGCTCCACCTGTCCAAAGAAACGGGCAAACATCCAGAGAAGTTCT
TGATTGTTGTTGTGGACGAAGTGACCGTTTCTATTCCAGAGGCAAGAGCC
CTCCTACACACGTGTCTCGACGAGGTGGATGAGTTTCCCAAAAGCGCGTA
GAGGGTAGAGTATTGGGGTCAAGGCGAATTTTAGTTCTTGAGGCGAGTCA
ACTGAATAGCCTCGGTCCGTTCTATGCGAAAGTGCCGTACATTGATATCG
TATAGCCCTGACAGCAACAGCAACAATGGTTCTTGCGTTCTGGTTTGGTC
TTCATCATTCAATGAACTATTATATATTGGATCGTTTCCGTCTTGCGTCT
TTCCCGATTTTGTGAATTTCTTGGATAATTACATACATCACCATCATCAT
CATCATCACCAATTATTGATTTTCGGGTAATTTGTTTGGATGCCCCCTGT
CGCTATGGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTCTTGTGTCTCATC
ACGGTCACATCAGGGGGTTGGAAACGTCGCCATGAGCGGAGCTCGGGCTG
TGATGGATGTAGTACTTGAGGATATTTCAGGCGGCACGAGCGGTTCCCGG
ACCAGCGCTGCGAACAGTGATGAGAACGTTCAGGGTGATAGTGAAACCAA
GAATTGTGGCGAAGAGATTACGGAATCTCGTGCTCTGGGCCTTGACCAAG
GCGCGGAGGTAAGATACTCAATCACACTAGACGCTGGAGGGGGGCGCGCG
GGCACGCGGACGCAGCAGGAGGTATAGTCATGTTTTGTATGCCTTGCTAT
CCCCTATTAGTTGGTTGGATGTTGCTGATAAGTAAATCTAGCCGTCGTTA
TGGGCTGCGTATCCTTCCTTCAGCAGGAGATTCACGTACTGGAAATCCAT
TCGGCCGTCCAATGTAGTATTTAAAAGTTGCTGATGAGAGATACATACCC
CTTGCCTTTCCCGCCCCGAGTACCCGCCTTTGTCGCCAATTGGCCAAACT
AACCGAGCATCAGATTGTGGAAACCGTTGCGCAGACCGGTGTTTGGGCGG
TGAAGGAAAGGGCGCAGATTTTGCTCCCGTTTTCCATTGGCGACAAGAAC
ATCGTTGAGGGTGGTGCTCTCAGCTACGAAAGCACGCCGCGTGATGGTCA
GGGGGAGGAGTCGAAGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig7757:4012..5630-

>mRNA_H-paniculata_contig7757.15790.1 ID=mRNA_H-paniculata_contig7757.15790.1|Name=mRNA_H-paniculata_contig7757.15790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig7757:4012..5630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAATCTTCATTCGAGGTGTGAACTGCTCGAACCATGACCCGCAGGC
GCGAATACGGGAGGGAGTCAACCGGGGAGTGGGGACCGTTGCTAGGACCG
GTGTTTGGGCCGTGGAGCAGGGCGCGGGAGGGATGGAAACCGTTGCCCGG
ACCAGTGCTTGGGCTGTAGAGAAAGGCGCTGAGATGAAAATCTTCATTCG
AGGTGTGAACTGCTCGAACCATGACCCGCAGGCGCGAATACGGGAGGGAG
TCAACCGGGGAGTGGGGACCGTTGCTAGGACCGGTGTTTGGGCCGTGGAG
CAGGGCGCGGGAGGGATGGAAACCGTTGCCCGGACCAGTGCTTGGGCTGT
AGAGAAAGGCGCTGAGGGGGTTGGAAACGTCGCCATGAGCGGAGCTCGGG
CTGTGATGGATGTAGTACTTGAGGATATTTCAGGCGGCACGAGCGGTTCC
CGGACCAGCGCTGCGAACAGTGATGAGAACGTTCAGGGTGATAGTGAAAC
CAAGAATTGTGGCGAAGAGATTACGGAATCTCGTGCTCTGGGCCTTGACC
AAGGCGCGGAGGGGGTTGGAAACGTCGCCATGAGCGGAGCTCGGGCTGTG
ATGGATGTAGTACTTGAGGATATTTCAGGCGGCACGAGCGGTTCCCGGAC
CAGCGCTGCGAACAGTGATGAGAACGTTCAGGGTGATAGTGAAACCAAGA
ATTGTGGCGAAGAGATTACGGAATCTCGTGCTCTGGGCCTTGACCAAGGC
GCGGAGACCGGTGTTTGGGCGGTGAAGGAAAGGGCGCAGATTTTGCTCCC
GTTTTCCATTGGCGACAAGAACATCGTTGAGGGTGGTGCTCTCAGCTACG
AAAGCACGCCGCGTGATGGTCAGGGGGAGGAGTCGAAGTCGACCGGTGTT
TGGGCGGTGAAGGAAAGGGCGCAGATTTTGCTCCCGTTTTCCATTGGCGA
CAAGAACATCGTTGAGGGTGGTGCTCTCAGCTACGAAAGCACGCCGCGTG
ATGGTCAGGGGGAGGAGTCGAAGTCG
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