mRNA_H-paniculata_contig77569.15788.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 156 bits (395), Expect = 3.100e-41 Identity = 82/181 (45.30%), Postives = 107/181 (59.12%), Query Frame = 1
Query: 4 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKD 546
+P G K I S+W+++ K+D T+K RVVAQ W Q G DCG +PV RIQSV + +L ++D TAFL A + E+V+V PPGFE G +V+KL +SLYG+ QSP NW T++ L ++ FVA KSDPCVY+Y H LTLYVDDLL+AG D
Sbjct: 170 VPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLY--------------DHNGAKIYLTLYVDDLLLAGND 336
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.030e-39 Identity = 81/181 (44.75%), Postives = 106/181 (58.56%), Query Frame = 1
Query: 4 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKD 546
+P K I S+W+++ K+D T+K RVVAQ W Q G DCG +PV RIQSV + +L ++D TAFL A + E+V+V PPGFE G +V+KL +SLYG+ QSP NW T++ L ++ FVA KSDPCVY+Y H LTLYVDDLL+AG D
Sbjct: 1191 VPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLY--------------DHNGAKIYLTLYVDDLLLAGND 1357
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.040e-39 Identity = 81/181 (44.75%), Postives = 106/181 (58.56%), Query Frame = 1
Query: 4 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKD 546
+P K I S+W+++ K+D T+K RVVAQ W Q G DCG +PV RIQSV + +L ++D TAFL A + E+V+V PPGFE G +V+KL +SLYG+ QSP NW T++ L ++ FVA KSDPCVY+Y H LTLYVDDLL+AG D
Sbjct: 1356 VPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLY--------------DHNGAKIYLTLYVDDLLLAGND 1522
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE) HSP 1 Score: 138 bits (347), Expect = 2.290e-37 Identity = 79/181 (43.65%), Postives = 107/181 (59.12%), Query Frame = 1
Query: 4 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFE-KDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGK 543
+P G K IGSRWLY++K+ KAR+ Q WGQ G D G +PV R S MA+AA V +D TAFL + ++E+VYVR G+E D VTG+ LV+KL++SLYG++QSP+N+ + ++ F A SDPCVY+Y A TY AIL +YVDD +AG+
Sbjct: 34 LPPGAKPIGSRWLYKMKATGVMKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVY--------GAGPTY------AILCVYVDDCTLAGR 200
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.360e-37 Identity = 75/181 (41.44%), Postives = 108/181 (59.67%), Query Frame = 1
Query: 4 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKD 546
+P G K I S+W+++ K+ ++K R+VAQ W Q G DCG +PV R QS+ +A +L++ ++D TAFL A + E+V+V PPGFE G LV++L++SLYG+ QSP NW T++ +L ++ FV KSD CVY+Y H LTLYVDDLL+AG +
Sbjct: 499 VPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLY--------------DHDDVQVYLTLYVDDLLLAGNN 665
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.240e-36 Identity = 81/181 (44.75%), Postives = 109/181 (60.22%), Query Frame = 1
Query: 4 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFE-KDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGK 543
+P G K IGSRWLY++K+ KAR++ Q WGQ G DCG +PV R S MA+AA V +D TAFL + ++E+VYVR G+E D VTG+ LV+KL++SLYG++QSP+N+ + ++ F A SDPCVY+Y A TY AIL +YVDD +AGK
Sbjct: 930 LPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVY--------GAGPTY------AILCVYVDDCTLAGK 1096
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 144 bits (363), Expect = 1.650e-36 Identity = 81/178 (45.51%), Postives = 105/178 (58.99%), Query Frame = 1
Query: 4 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEK-DTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLM 534
+PAG IG+RW+Y+VK+D +KARVV Q W Q+ G DC +PV +I S +A+AAA VI +D QTAFLN L EDVY PGFEK ++ TG LV KL++SLYG+RQSP W +T++ L F SDPCVY T +LTL+VDD+L+
Sbjct: 684 VPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVY--------------TKGSGNSYIMLTLFVDDILL 847
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE) HSP 1 Score: 141 bits (355), Expect = 6.240e-36 Identity = 73/179 (40.78%), Postives = 105/179 (58.66%), Query Frame = 1
Query: 4 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAG 540
+P G K I S+W+++ K+D ++K R+V Q W Q G D G +PV R+QS+ A +L++ ++D TAFL A + E+V+V PPGFE G LV++L++SLYG+ QSP NW T++ L ++ FV KSD C+Y+Y H LTLYVDDLL+AG
Sbjct: 90 VPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDTCIYLY--------------DHDDVQVYLTLYVDDLLLAG 254
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5L1I6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I6_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.180e-33 Identity = 76/185 (41.08%), Postives = 107/185 (57.84%), Query Frame = 1
Query: 4 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFE-KDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKDKMI 555
+P + +R+++++K D+ +KAR+VA Q AGR G+ +PV R+ S+ A+A +V +LD AFLNA D DVYVR PG E +D TG ++V KL +SLYG+ QSP W +N+ L + SDPCVYI+VS DELT IL +YVDD+L+ G +K I
Sbjct: 34 VPKDVDIFDTRFVFKIKVDSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTHSDPCVYIFVS--GDELT------------ILAIYVDDILITGGNKEI 204
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5JPV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV6_9PHAE) HSP 1 Score: 130 bits (327), Expect = 1.100e-31 Identity = 77/185 (41.62%), Postives = 109/185 (58.92%), Query Frame = 1
Query: 4 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFE-KDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKDKMI 555
+P +R+++++K+D+ +KAR+VA Q AGR G+ +PV R+ S+ A+A +V +LD AFLNA D DVYVR PG E +D TG ++V KL +SLYG+ QSP W +N+ L + +SDPCVYI+VS DELT ILT+YVDD+L+ G +K I
Sbjct: 34 VPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGMSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVS--GDELT------------ILTIYVDDILITGGNKEI 204 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig77569.15788.1 >prot_H-paniculata_contig77569.15788.1 ID=prot_H-paniculata_contig77569.15788.1|Name=mRNA_H-paniculata_contig77569.15788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp EIPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIback to top mRNA from alignment at H-paniculata_contig77569:3..563- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig77569.15788.1 ID=mRNA_H-paniculata_contig77569.15788.1|Name=mRNA_H-paniculata_contig77569.15788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=561bp|location=Sequence derived from alignment at H-paniculata_contig77569:3..563- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig77569:3..563- >mRNA_H-paniculata_contig77569.15788.1 ID=mRNA_H-paniculata_contig77569.15788.1|Name=mRNA_H-paniculata_contig77569.15788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig77569:3..563- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |