mRNA_H-paniculata_contig77559.15786.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 139 bits (351), Expect = 6.160e-35 Identity = 83/196 (42.35%), Postives = 112/196 (57.14%), Query Frame = 1
Query: 1 LVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESD-LYFFSLEITSSSGAP------------GLAMQAADTVTLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDYDICAVGKSHQLAHPKTADNQVQRSFQLV-TDLMRPIMPEALEGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSF 546
++VPGLG NLFSV A NGV S+F +NPRLE+ + VP++ D + IT GA GLA++ +T LWHRRMGH+N SL++L+ +G+D+ G V D C +GKS Q HPK A V FQLV D + P P AL GFKYA K D++T+W E+ L+K K ++ A + F
Sbjct: 490 MLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRV-ETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 684
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.100e-34 Identity = 83/196 (42.35%), Postives = 112/196 (57.14%), Query Frame = 1
Query: 1 LVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESD-LYFFSLEITSSSGAP------------GLAMQAADTVTLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDYDICAVGKSHQLAHPKTADNQVQRSFQLV-TDLMRPIMPEALEGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSF 546
++VPGLG NLFSV A NGV S+F +NPRLE+ + VP++ D + IT GA GLA++ +T LWHRRMGH+N SL++L+ +G+D+ G V D C +GKS Q HPK A V FQLV D + P P AL GFKYA K D++T+W E+ L+K K ++ A + F
Sbjct: 490 VLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRV-ETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 684
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 137 bits (344), Expect = 5.350e-34 Identity = 81/194 (41.75%), Postives = 107/194 (55.15%), Query Frame = 1
Query: 4 VVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESD-LYFFSLEITSSSGAPGLAMQA-----------ADTVTLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDYDICAVGKSHQLAHPKTADNQVQRSFQLV-TDLMRPIMPEALEGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSF 546
+VPGLG NLFSV A NGV S+F +NPRLE+ + VP++ D + IT GA Q +T LWHRRMGH+N SL++L+ +G+D+ G V D C +GKS Q HPK A V FQLV D + P P AL GFKYA K D++T+W E+ L+K K ++ A + F
Sbjct: 613 LVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 806
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.350e-31 Identity = 79/186 (42.47%), Postives = 104/186 (55.91%), Query Frame = 1
Query: 1 LVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESD-LYFFSLEITSSSGAP------------GLAMQAADTVTLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDYDICAVGKSHQLAHPKTADNQVQRSFQLV-TDLMRPIMPEALEGFKYACKISDEYTRWTEIYLLKTK 516
++VPGLG NLFSV A NGV S+F +NPRLE+ + VP++ D + IT GA GLA++ +T LWHRRMGH+N SL++L+ +G+D+ G V D C +GKS Q HPK A V FQLV D P L GFKYA K D++T+W E+ L+K K
Sbjct: 395 VLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRV-ETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDK 579
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.810e-31 Identity = 65/144 (45.14%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 115 VPLQELESDLYFFSLEITSSSGAPGLAMQAADTVTLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDYDICAVGKSHQLAHPKTADNQVQRSFQLVTDLMRPIMPEALEGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSF 546
VPL+ L +D S+ +P +AM+A ++ LWHRR+GH++ SL++L+ +DDNGVD+ G + D+CA+GKS Q HPK A V R FQ+ TDLM PI P A GF+Y K T+W EI+L+KTK A+ Q F
Sbjct: 6 VPLRRLGNDTVLCSVS-RELDNSPNMAMRA-ESADLWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKATYDVSRHFQVSTDLMGPISPPARRGFRYVSKFVHGNTKWKEIFLIKTKRDAIKILQLF 147
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 127 bits (320), Expect = 8.220e-31 Identity = 75/190 (39.47%), Postives = 103/190 (54.21%), Query Frame = 1
Query: 19 GRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESD------LYFFSLEITSSSGAPGLAMQAADTVTL-------WHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDYDICAVGKSHQLAHPKTADNQVQRSFQLVT-DLMRPIMPEALEGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSF 546
G NLFSV A GV ++F +NPRLE+ + P+Q L D +Y +++ G P + A D + L WHRRMGH+N SL++L+ NGVD+ G V D +C +GKS Q HPK V R FQ V+ D + P P AL GFKYA K D+ T+W EI L+K + ++ + F
Sbjct: 208 GTNLFSVTLAMLKGVETLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPGGPTVLGDAPDALALKVESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALF 397
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 117 bits (292), Expect = 2.170e-27 Identity = 57/137 (41.61%), Postives = 83/137 (60.58%), Query Frame = 1
Query: 139 DLYFFSLEITSSSGAPGLAMQAADTVTLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDYDICAVGKSHQLAHPKTADNQVQRSFQLVT-DLMRPIMPEALEGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSF 546
+LY F++++ + G+A+ + LWHRR+GH++ SL++L+ V NGV++ G + D+CAVG S Q HPK A R FQLVT DLM P P AL GF Y K D++ +W E++L+K K + A Q F
Sbjct: 242 ELYHFTMDLPETGEISGVALPVK-SAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLF 377
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE) HSP 1 Score: 112 bits (279), Expect = 2.720e-25 Identity = 66/160 (41.25%), Postives = 91/160 (56.88%), Query Frame = 1
Query: 1 LVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESDLYFFSLEITSSSGAPGLAMQAADTVTLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDYDICAVGKSHQLAHPKTADNQVQRSFQLVT-DLMRPIMPEALEGFKYACKISDE 477
++VPGLG LFSV A GV ++ +N RLE+ + P+Q L ++ T+ + +++AD LWHRRMGH+N SL++L+ NGVD+ G V D +C +GKS Q HPK A V R FQ V+ D + P P AL GFK A K D+
Sbjct: 580 VLVPGLGTKLFSVTLAMLKGVATLCHPDNHRLESGDVVFPMQTL-------GVDATTGKRIYSIEVESAD---LWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVDTLGPFTPTALSGFKVATKFVDQ 729
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.250e-24 Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 175 SGAPGLAMQAADTVTLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDYDICAVGKSHQLAHPKTADNQVQRSFQLV-TDLMRPIMPEALEGFKYACKISDEYTRWTEIYLLKTKDGALHAFQSF 546
+G GLA++ ++ LWHRRMGH+N SL++L+ +NGVD V D CA+GKS Q HPK A V+R FQLV D + P P AL GFKYA K D+ T+W EI L+K K ++ + F
Sbjct: 514 NGPGGLALKV-ESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALF 637
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE) HSP 1 Score: 106 bits (265), Expect = 1.810e-23 Identity = 67/208 (32.21%), Postives = 101/208 (48.56%), Query Frame = 1
Query: 1 LVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESDLYFFSLEIT-----SSSGAPGLA-----------------MQAADTVTLWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDYDICAVGKSHQLAHPKTADNQVQRSFQLVT-DLMRPIMPEALE---GFKYACKISDEYTRWTEIYLLKTKDGALHAFQSF 546
L+VPGLGRN+FS + G+ + + + P L +PL + D +L+IT SG L + +ADT WHRR+GHLN SL++L+ VD+ ++ +C + K Q HPK + ++ R QLV D M P+ P A F YACK++D+YT+ E+YLL+ K A ++
Sbjct: 276 LIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADT---WHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTY 480 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77559.15786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig77559.15786.1 >prot_H-paniculata_contig77559.15786.1 ID=prot_H-paniculata_contig77559.15786.1|Name=mRNA_H-paniculata_contig77559.15786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp LVVPGLGRNLFSVKQATRNGVVSIFDMNNPRLETNNFTVPLQELESDLYFback to top mRNA from alignment at H-paniculata_contig77559:22..570- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig77559.15786.1 ID=mRNA_H-paniculata_contig77559.15786.1|Name=mRNA_H-paniculata_contig77559.15786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=549bp|location=Sequence derived from alignment at H-paniculata_contig77559:22..570- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig77559:22..570- >mRNA_H-paniculata_contig77559.15786.1 ID=mRNA_H-paniculata_contig77559.15786.1|Name=mRNA_H-paniculata_contig77559.15786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig77559:22..570- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |