mRNA_H-paniculata_contig7752.15780.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7752.15780.1
Unique NamemRNA_H-paniculata_contig7752.15780.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Match: F0Y8Y3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8Y3_AURAN)

HSP 1 Score: 90.5 bits (223), Expect = 1.310e-21
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 VADMGSLGPLYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIAAGFSFLLGRTLLR 198
            V  +G LGPLYF  +Y+ AE+LA+PA+P TA+AGYLFG   GTAVVL SATIAAG SFL+GR+LLR
Sbjct:    1 VEKLGPLGPLYFSVVYVLAEVLALPAVPLTASAGYLFGAVEGTAVVLFSATIAAGASFLIGRSLLR 66
[Close]
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Match: A0A835ZF34_9STRA (Snare associated Golgi protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF34_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.080e-21
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 VADMGSLGPLYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIAAGFSFLLGRTLLR 198
            +   G +G LYFGA+Y+ AE+LAIPALP TA++GYLFG+ GGT VV+ SATIAAG SFLLGRT LR
Sbjct:    2 IQSAGPMGYLYFGALYVIAEVLAIPALPLTASSGYLFGLVGGTTVVICSATIAAGISFLLGRTFLR 67
[Close]
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Match: D8LGE5_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE5_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.810e-19
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 VADMGSLGPLYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIAAGFSFLLGRTLLR 198
            V ++G LG +YFG +Y+ AE+L IPA+P TAAAG+LFG  GGTAVVL SATIAA  SF LGRTLLR
Sbjct:  251 VEELGPLGVVYFGLLYVLAEVLIIPAIPLTAAAGFLFGAAGGTAVVLTSATIAAAISFQLGRTLLR 316
[Close]
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Match: A0A7R9WRQ5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRQ5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.840e-19
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 VADMGSLGPLYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIAAGFSFLLGRTLLR 198
            VA MG LG +YFG  Y  AEILAIPA+P TA+AGYLFG   GT VVL+SA+IAA  SFL+GRTLLR
Sbjct:   80 VASMGPLGAVYFGVAYTIAEILAIPAIPLTASAGYLFGPVQGTGVVLVSASIAAAISFLIGRTLLR 145
[Close]
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Match: A0A6H5L0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.160e-19
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 VADMGSLGPLYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIAAGFSFLLGRTLLR 198
            V ++G LG +YFG +Y+ AE+L IPA+P TAAAG+LFG  GGTAVVL SATIAA  SF LGRTLLR
Sbjct:  233 VEELGPLGVVYFGLLYVLAEVLIIPAIPLTAAAGFLFGAAGGTAVVLTSATIAAAISFQLGRTLLR 298
[Close]
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Match: A0A836CBR2_9STRA (Snare associated Golgi protein-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBR2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.290e-19
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   28 LYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIAAGFSFLLGRTLLR 198
            LYFG +Y+ AE+LAIPALP TA++GYLFG+ GGTAVV ISATIAA   FLLGRT LR
Sbjct:    1 LYFGLVYVVAEVLAIPALPLTASSGYLFGLAGGTAVVAISATIAAAIGFLLGRTFLR 57
[Close]
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Match: A0A7S4I716_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I716_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.450e-19
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 VADMGSLGPLYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIAAGFSFLLGRTLLR 198
            V  MG  G LYFG IY  AEILAIPA+P TA+AGYLFGVT GTAVVL SA+IAA  SF++GRTLLR
Sbjct:  190 VEAMGPSGFLYFGIIYTVAEILAIPAIPLTASAGYLFGVTEGTAVVLASASIAAAISFIIGRTLLR 255
[Close]
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Match: A0A7S0CCP1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.160e-19
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 VADMGSLGPLYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIAAGFSFLLGRTLLR 198
            + DMG  G  YFG IY  AEILAIPA+P TA+AGYLFGV  GT +VL+SA+IAA  SF +GRTLLR
Sbjct:    7 IQDMGPSGVAYFGFIYTIAEILAIPAIPLTASAGYLFGVRDGTLIVLLSASIAASISFFIGRTLLR 72
[Close]
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Match: A0A7S0MZZ3_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MZZ3_9CRYP)

HSP 1 Score: 84.7 bits (208), Expect = 7.750e-19
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 VADMGSLGPLYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIAAGFSFLLGRTLLR 198
            V ++G+LG LYF  +YI AE+L  PA+P TA+AGYLFGVT GT VVL+SAT+AAG +F++GRT LR
Sbjct:   52 VEELGTLGYLYFAVVYIVAEMLPTPAVPLTASAGYLFGVTMGTVVVLLSATVAAGGAFVIGRTFLR 117
[Close]
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Match: A0A7S4A122_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A122_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.030e-18
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 VADMGSLGPLYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIAAGFSFLLGRTLLR 198
            V  +G LG  YF A+Y+ AE+LA+PA+P TA+AGYLFG   GTA+VL SATIAAG SFL+GR+LLR
Sbjct:  167 VERLGPLGAAYFAAVYVVAEVLALPAVPLTASAGYLFGAVEGTAIVLFSATIAAGVSFLIGRSLLR 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7752.15780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0Y8Y3_AURAN1.310e-2168.18Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A835ZF34_9STRA2.080e-2168.18Snare associated Golgi protein-domain-containing p... [more]
D8LGE5_ECTSI1.810e-1968.18Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectoc... [more]
A0A7R9WRQ5_9STRA1.840e-1969.70Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A6H5L0C0_9PHAE4.160e-1968.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBR2_9STRA4.290e-1973.68Snare associated Golgi protein-domain-containing p... [more]
A0A7S4I716_9STRA4.450e-1972.73Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S0CCP1_9STRA5.160e-1966.67Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0MZZ3_9CRYP7.750e-1963.64Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S4A122_9STRA1.030e-1865.15Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7752contigH-paniculata_contig7752:10719..10919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue3.4e-15
Seed eggNOG ortholog44056.XP_009037153.1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size192
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.1767652-UTR-H-paniculata_contig7752:10718..107271622930963.1767652-UTR-H-paniculata_contig7752:10718..10727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7752 10719..10727 +
1691481529.4916182-UTR-H-paniculata_contig7752:10718..107271691481529.4916182-UTR-H-paniculata_contig7752:10718..10727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7752 10719..10727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.1957216-CDS-H-paniculata_contig7752:10727..109191622930963.1957216-CDS-H-paniculata_contig7752:10727..10919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7752 10728..10919 +
1691481529.504581-CDS-H-paniculata_contig7752:10727..109191691481529.504581-CDS-H-paniculata_contig7752:10727..10919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7752 10728..10919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7752.15780.1prot_H-paniculata_contig7752.15780.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7752 10728..10919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7752.15780.1

>prot_H-paniculata_contig7752.15780.1 ID=prot_H-paniculata_contig7752.15780.1|Name=mRNA_H-paniculata_contig7752.15780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MGSLGPLYFGAIYIGAEILAIPALPFTAAAGYLFGVTGGTAVVLISATIA
AGFSFLLGRTLLR*
back to top

mRNA from alignment at H-paniculata_contig7752:10719..10919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7752.15780.1 ID=mRNA_H-paniculata_contig7752.15780.1|Name=mRNA_H-paniculata_contig7752.15780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig7752:10719..10919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCAGATATGGGCTCGCTGGGTCCTCTGTACTTCGGTGCAATCTATAT
CGGTGCCGAGATACTGGCCATCCCAGCCTTGCCCTTTACCGCTGCCGCCG
GCTATCTGTTCGGCGTCACGGGAGGAACGGCTGTGGTTCTCATCAGTGCT
ACGATAGCGGCGGGATTTTCTTTCTTGCTAGGTCGCACCTTGCTGAGGTG
A
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7752:10719..10919+

>mRNA_H-paniculata_contig7752.15780.1 ID=mRNA_H-paniculata_contig7752.15780.1|Name=mRNA_H-paniculata_contig7752.15780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig7752:10719..10919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTCGCTGGGTCCTCTGTACTTCGGTGCAATCTATATCGGTGCCGA
GATACTGGCCATCCCAGCCTTGCCCTTTACCGCTGCCGCCGGCTATCTGT
TCGGCGTCACGGGAGGAACGGCTGTGGTTCTCATCAGTGCTACGATAGCG
GCGGGATTTTCTTTCTTGCTAGGTCGCACCTTGCTGAGGTGAATGGGCTC
GCTGGGTCCTCTGTACTTCGGTGCAATCTATATCGGTGCCGAGATACTGG
CCATCCCAGCCTTGCCCTTTACCGCTGCCGCCGGCTATCTGTTCGGCGTC
ACGGGAGGAACGGCTGTGGTTCTCATCAGTGCTACGATAGCGGCGGGATT
TTCTTTCTTGCTAGGTCGCACCTTGCTGAGGTGA
back to top