mRNA_H-paniculata_contig775.15770.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig775.15770.1
Unique NamemRNA_H-paniculata_contig775.15770.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig775.15770.1 vs. uniprot
Match: D8LUB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB9_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 3.330e-42
Identity = 105/180 (58.33%), Postives = 124/180 (68.89%), Query Frame = 3 
Query:   45 AFEVNEGTTPKRPEEEMEIDADLARIRKRRREALRRXEAMERKGARLATVLQDVNQFVEALQMGVSSSFDDNGLTPVPAKVQEAVESSAELRAIAARAQGLTRRMGELQAQSAAAAVSGGHGDEGGGSQNXXXXXXXXXIAARAVAGQGNLQSIFERSRDQQVVAGGVEEYSALQARLNG 584
            A EV EGT PKR EEE  +DA++  +RKRRR+ LRR  A+ RKGAR   +LQDV  FV+ALQMGVSSSFDDNGLTP+P+KVQEAV+S AELR  A RAQ LTRR+ E QA+ +A          G G   XXXXXXXXX          +LQS+F+RS +QQVVAG   EYS L+ RL G
Sbjct:  150 AAEVEEGTPPKRLEEEEALDAEIQHLRKRRRQGLRRCAALVRKGARETVLLQDVKDFVDALQMGVSSSFDDNGLTPIPSKVQEAVQSCAELRVTADRAQALTRRL-ERQAEQSA----------GWGXXXXXXXXXXXXXXXXXXXXXRDLQSMFQRSSEQQVVAGSATEYSTLETRLRG 318
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BLAST of mRNA_H-paniculata_contig775.15770.1 vs. uniprot
Match: A0A6H5KN64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN64_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 6.860e-42
Identity = 103/183 (56.28%), Postives = 122/183 (66.67%), Query Frame = 3 
Query:   36 EVWAFEVNEGTTPKRPEEEMEIDADLARIRKRRREALRRXEAMERKGARLATVLQDVNQFVEALQMGVSSSFDDNGLTPVPAKVQEAVESSAELRAIAARAQGLTRRMGELQAQSAAAAVSGGHGDEGGGSQNXXXXXXXXXIAARAVAGQGNLQSIFERSRDQQVVAGGVEEYSALQARLNG 584
            + WA EV EGT PKR EEE  +DA++  +RKRRR+ LRR  A+ R+GAR   +LQDV  FV+ALQMGVSSSFDDNGLTP+P+KVQEAV+S AELR  A RAQ LTRR+     QSA             G   XXXXXXXXX          +LQS+F+RS +QQVVAG   EYS L+ RL G
Sbjct:  163 DAWASEVEEGTPPKRLEEEEALDAEIQHLRKRRRQGLRRCAALVRRGARETVLLQDVKDFVDALQMGVSSSFDDNGLTPIPSKVQEAVQSCAELRVTADRAQALTRRLERQVEQSAE-----------WGXXXXXXXXXXXXXXXXXXXXXRDLQSMFQRSSEQQVVAGSATEYSTLKTRLRG 334
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig775.15770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUB9_ECTSI3.330e-4258.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN64_9PHAE6.860e-4256.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig775contigH-paniculata_contig775:3944..5771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size611
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig775.15770.1prot_H-paniculata_contig775.15770.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig775 3968..5679 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.8159873-UTR-H-paniculata_contig775:3943..39671622930961.8159873-UTR-H-paniculata_contig775:3943..3967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 3944..3967 -
1691481529.0224442-UTR-H-paniculata_contig775:3943..39671691481529.0224442-UTR-H-paniculata_contig775:3943..3967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 3944..3967 -
1622930961.8745677-UTR-H-paniculata_contig775:5679..57711622930961.8745677-UTR-H-paniculata_contig775:5679..5771Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 5680..5771 -
1691481529.0694523-UTR-H-paniculata_contig775:5679..57711691481529.0694523-UTR-H-paniculata_contig775:5679..5771Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 5680..5771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.829873-CDS-H-paniculata_contig775:3967..42121622930961.829873-CDS-H-paniculata_contig775:3967..4212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 3968..4212 -
1691481529.0338764-CDS-H-paniculata_contig775:3967..42121691481529.0338764-CDS-H-paniculata_contig775:3967..4212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 3968..4212 -
1622930961.8456476-CDS-H-paniculata_contig775:4841..50431622930961.8456476-CDS-H-paniculata_contig775:4841..5043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 4842..5043 -
1691481529.044748-CDS-H-paniculata_contig775:4841..50431691481529.044748-CDS-H-paniculata_contig775:4841..5043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 4842..5043 -
1622930961.8612304-CDS-H-paniculata_contig775:5631..56791622930961.8612304-CDS-H-paniculata_contig775:5631..5679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 5632..5679 -
1691481529.0575948-CDS-H-paniculata_contig775:5631..56791691481529.0575948-CDS-H-paniculata_contig775:5631..5679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 5632..5679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig775.15770.1

>prot_H-paniculata_contig775.15770.1 ID=prot_H-paniculata_contig775.15770.1|Name=mRNA_H-paniculata_contig775.15770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
MEIDADLARIRKRRREALRRREAMERKGARLATVLQDVNQFVEALQMGVS
SSFDDNGLTPVPAKVQEAVESSAELRAIAARAQGLTRRMGELQAQSAAAA
VSGGHGDEGGGSQNGSANGAAGGIAARAVAGQGNLQSIFERSRDQQVVAG
GVEEYSALQARLNG*
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mRNA from alignment at H-paniculata_contig775:3944..5771-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig775.15770.1 ID=mRNA_H-paniculata_contig775.15770.1|Name=mRNA_H-paniculata_contig775.15770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1828bp|location=Sequence derived from alignment at H-paniculata_contig775:3944..5771- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACCCAGAGCGTGGAGGCTACAGGGAGGACTGAAGAGGTATGGGCTTTT
GAAGTAAACGAGGGAACGACCCCGAAGCGACCGGAGGAGGAGATGGAGAT
CGATGCAGACCTGGCGCGGATTCGAAAGCGGCGACGGGAGGTGGGTGGGC
GTTATTACAGCCGCCGAGTGGCAGCGGCGGCGGGTGCTGTATCTGTCGAT
ACGAGAGTTACTCGGCAGAGTGATCGTTTCCCAGAACGTGGTGGCTAGAT
GCCATCCTCACTGTACCGTTTCCACCACCTTAAACCTTGGCGTCAATGCA
CCTTGCTGTGTAGTTCTACGGATATTGGTTTCGTTTGTTTATCACAGAGT
GATGTGTATGTTTGTCGTAATGGTGGCGACACTAAACGTGGGCGTGACAG
CCTAGAATACAGAAATTTGGATGCGTGTGCTGTGGGAAGCTGTGTCCTCG
TCTGCCGCTTTTGCCTCGATATGCATGTCTTAGGGTCGATCAAAGCTGCA
GCACGTCGGATGACTGTGATACGTCGTTTTGTTCGGCGACGGTGGTGTCG
CCAAACTGAAGGAGACAGCAATAGACTATTCAATGCCGCCCTGCGGCCTG
GAAAACTGCTCTTCGTGCCCTCCTGGAGAAAATTCCTGGTACCTTCAACA
ATTACTCAGAAGGAAGTTCACCTTCCGTTGTCCTCTCCATTACAACTTTG
CGTGACCTCCAACTGTGCGCCGTAATAGGCCTTGCGACGACGCGAGGCTA
TGGAACGGAAAGGCGCACGGCTGGCGACAGTATTACAGGATGTGAACCAG
TTCGTCGAGGCACTCCAAATGGGTGTGTCCAGCTCCTTTGACGACAATGG
GCTAACCCCAGTACCGGCTAAGGTTCAGGAGGCGGTGGAGTCTAGCGCGG
AGCTGAGGGCGATCGCTGCGCGAGCACAAGGCATGTCACTTGTTCCGAGA
GCCGCATCTATGCATTGGAATCGAAAGAGAGAACTATTGTGTGTATTTAT
TTCGAAACGCATATGGAAACCCCGATCACGACACGGTCAATTTCACGGAA
CCCAAAAAATCAACGGAAATAGTTTCGCCGCTCTTGTGACCACAGCCCCT
TGTTTCTTGAGGAAAATGCCCTTGATTCTTTTTGGGGGGGACGCGTGAAC
GTGTCTCTCTCGCTGTCGTTGTAGAAACAAACAGTGGACTATCTCGAGAC
CAACTGAAATGCACGCGAAATAGTTTAAATTCAATTAGTAGTTTTATGTT
AAGCTTGACGGTGTGTGTTACTTTTGGTACTGAGTAAAATACGCGCGAAG
GAACCCATGTAATTCCAATGTCTTAACTTCGGACAATAATGCATGAGAGA
ACGAACGAAGAACTGTGGGTTCACCCTCACTGCAAAATTGCTGGGGCACG
CTGCCTGCCCGAGGTTGGGTGTTGGGTGCGCGTGGAAAATCCAACTACCC
TGCGTGTCTAGTGCGTGTTGCGTCAACGTCACCTCCCTCGCCCCCGTTCC
CTCTCACCTGAGTATTCCCCGCAAACGTACTTTACGCCACGAACCCCCCC
CCACAAAAGGGCTAACAAGACGAATGGGGGAGCTGCAGGCTCAGAGCGCC
GCAGCGGCGGTCAGCGGCGGTCATGGTGATGAGGGCGGCGGCTCGCAGAA
TGGCTCCGCAAACGGCGCTGCCGGTGGTATTGCGGCGAGGGCAGTAGCTG
GACAAGGCAACTTGCAGTCCATTTTCGAGCGGTCACGGGATCAGCAGGTC
GTCGCGGGCGGGGTGGAAGAATATTCTGCTCTGCAAGCTCGACTAAATGG
TTGACGTATATTTGCTGGTAGGGGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig775:3944..5771-

>mRNA_H-paniculata_contig775.15770.1 ID=mRNA_H-paniculata_contig775.15770.1|Name=mRNA_H-paniculata_contig775.15770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig775:3944..5771- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCGATGCAGACCTGGCGCGGATTCGAAAGCGGCGACGGGAGAT
GGAGATCGATGCAGACCTGGCGCGGATTCGAAAGCGGCGACGGGAGGCCT
TGCGACGACGCGAGGCTATGGAACGGAAAGGCGCACGGCTGGCGACAGTA
TTACAGGATGTGAACCAGTTCGTCGAGGCACTCCAAATGGGTGTGTCCAG
CTCCTTTGACGACAATGGGCTAACCCCAGTACCGGCTAAGGTTCAGGAGG
CGGTGGAGTCTAGCGCGGAGCTGAGGGCGATCGCTGCGCGAGCACAAGGC
CTTGCGACGACGCGAGGCTATGGAACGGAAAGGCGCACGGCTGGCGACAG
TATTACAGGATGTGAACCAGTTCGTCGAGGCACTCCAAATGGGTGTGTCC
AGCTCCTTTGACGACAATGGGCTAACCCCAGTACCGGCTAAGGTTCAGGA
GGCGGTGGAGTCTAGCGCGGAGCTGAGGGCGATCGCTGCGCGAGCACAAG
GGCTAACAAGACGAATGGGGGAGCTGCAGGCTCAGAGCGCCGCAGCGGCG
GTCAGCGGCGGTCATGGTGATGAGGGCGGCGGCTCGCAGAATGGCTCCGC
AAACGGCGCTGCCGGTGGTATTGCGGCGAGGGCAGTAGCTGGACAAGGCA
ACTTGCAGTCCATTTTCGAGCGGTCACGGGATCAGCAGGTCGTCGCGGGC
GGGGTGGAAGAATATTCTGCTCTGCAAGCTCGACTAAATGGTTGAGGCTA
ACAAGACGAATGGGGGAGCTGCAGGCTCAGAGCGCCGCAGCGGCGGTCAG
CGGCGGTCATGGTGATGAGGGCGGCGGCTCGCAGAATGGCTCCGCAAACG
GCGCTGCCGGTGGTATTGCGGCGAGGGCAGTAGCTGGACAAGGCAACTTG
CAGTCCATTTTCGAGCGGTCACGGGATCAGCAGGTCGTCGCGGGCGGGGT
GGAAGAATATTCTGCTCTGCAAGCTCGACTAAATGGTTGA
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