mRNA_H-paniculata_contig775.15769.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig775.15769.1
Unique NamemRNA_H-paniculata_contig775.15769.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig775.15769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig775contigH-paniculata_contig775:937..2608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size479
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig775.15769.1prot_H-paniculata_contig775.15769.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig775 937..2552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.6037242-CDS-H-paniculata_contig775:936..12801622930961.6037242-CDS-H-paniculata_contig775:936..1280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 937..1280 -
1691481528.9616923-CDS-H-paniculata_contig775:936..12801691481528.9616923-CDS-H-paniculata_contig775:936..1280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 937..1280 -
1622930961.6197064-CDS-H-paniculata_contig775:2473..25521622930961.6197064-CDS-H-paniculata_contig775:2473..2552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 2474..2552 -
1691481528.9703283-CDS-H-paniculata_contig775:2473..25521691481528.9703283-CDS-H-paniculata_contig775:2473..2552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 2474..2552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.6380162-UTR-H-paniculata_contig775:2552..26081622930961.6380162-UTR-H-paniculata_contig775:2552..2608Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 2553..2608 -
1691481528.9782763-UTR-H-paniculata_contig775:2552..26081691481528.9782763-UTR-H-paniculata_contig775:2552..2608Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 2553..2608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig775.15769.1

>prot_H-paniculata_contig775.15769.1 ID=prot_H-paniculata_contig775.15769.1|Name=mRNA_H-paniculata_contig775.15769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MKGNAFSTVIAFLLTNASQALQAPSPASACGRRNTPGITSQLTTSQQQRR
QQSTRGALATVDNHAESNRRPLEEISHKFLEELERELTQELDLAAGELFT
ETKQLNDREIKRVFDEDVSAEIFDGFHEGEEEVGGALMKAR
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mRNA from alignment at H-paniculata_contig775:937..2608-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig775.15769.1 ID=mRNA_H-paniculata_contig775.15769.1|Name=mRNA_H-paniculata_contig775.15769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1672bp|location=Sequence derived from alignment at H-paniculata_contig775:937..2608- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACCATGCTGTAACCCCTTTATGTCTGCTTGGAGAACGATCTCCAGGAG
TTCGGCATGAAAGGCAATGCATTTTCAACGGTGATTGCCTTCTTGCTGAC
CAACGCTTCACAGGCTCTGCAGGCACCATCTCCAGGTGCTGAGATACTCC
ACCATTAGGTTACGGCGTGTAACACCCCCCCCGCCACACCCCTCCATACA
CACATACACACACCTCGTCCGTTCAGCGAGGAGGATGGAGTTACAGTTCC
ATTTCTTGGCATCATGAAGAACCAAGGACCCATGAAAAGCGCTTAGAAGT
CGTGCTGCTAAGATTAAATTTCCACGCTGGTGGCGGTGATACTTTGCGTA
TCTTGTGTCTTGGAGGCAATTTGGGCGGGGAAATCCGTTTCTGTGTGCAG
CACCGGTTCATCATCGTCTGTACTTATACATTCACCTTGTAGCATGTGTT
GCTTCTACTAAATGGTACATGTATTCGCTTTGAAACCCGCACTCGAAACA
GATTCTTGTACTGTAGGCTACTGAGGTAGTAAGGTGCATTACAACCCACC
CTGAACCTCAACACTCAGTTGTACGGCGATCGTGATCGCTTGAGCAGTAG
GAATGTGGGTACTGCCGCTACCCGTACCTGCAACTTCAATCTCATCACAA
GCTCACCCAACTTAGCCGATGAAAAAAATGTGGATACAGTTGTACCTCAT
CCTGGCTTTCGGCCAGGGAACGGCGGATTCGCCATTACTTGCTCTATTTA
GTTGTGGTCGCGGTTGCGCGTCGTAGCCGCAATGCAAGTAGAGTGCAGTA
AGTACATAAGTTCCTTCGTAGGATTAGTCAAGTTCGAATGAATAATGTAT
GGAAGTGCAGTTCCTGGATATGTAGACCTCCAATAAATTTAGCATCTCCC
ACATGTAGTGTCCACCACATCTGAATTACAGTATACCCTAGAACCTGCGG
GTACCTGTATCGCATGTATTGTTATATTCTTTCGAGAGTTGTAACAAAAA
CAGGCAGATACAACGATGCATATATCTACCAAGTTTTGGTCAACACATGT
ACCGCCATGTTATCTGTACCATGGAGTGCTCCCCAATTGATCCCTGCCCT
CCTGCGACATTGAGGCAGCACAACCATGGCAATCAATTTGTTTACGTCCA
ATCATGTAGTCCGTCAGTAATTGATGACTAAAAATGGGAATATATGGTAC
TAACTAGAGTACCACTCTCTAGAGCATAAACCACCAAATGTACCAGACTC
TGTCAAACTGACTGACCCACCTCCACCTCCACCTCAAATGCCCCAATTAA
CACTGCCGTCTTGGTTGCGTACCTACAGCAAGCGCTTGCGGTCGACGCAA
CACACCAGGGATTACATCGCAGCTGACCACATCACAACAACAACGGCGCC
AACAGTCTACGCGTGGCGCACTGGCCACCGTCGACAACCACGCGGAGAGC
AACCGCCGCCCGCTTGAAGAAATTTCCCACAAGTTTCTGGAAGAACTAGA
ACGAGAGCTTACTCAAGAACTCGACCTTGCCGCCGGCGAGCTTTTCACGG
AGACCAAGCAGTTAAATGATCGCGAGATAAAGCGAGTGTTTGACGAGGAT
GTTTCTGCTGAGATTTTCGATGGTTTTCATGAGGGTGAAGAGGAGGTGGG
GGGGGCTCTAATGAAGGCGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig775:937..2608-

>mRNA_H-paniculata_contig775.15769.1 ID=mRNA_H-paniculata_contig775.15769.1|Name=mRNA_H-paniculata_contig775.15769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig775:937..2608- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGGCAATGCATTTTCAACGGTGATTGCCTTCTTGCTGACCAACGC
TTCACAGGCTCTGCAGGCACCATCTCCAGATGAAAGGCAATGCATTTTCA
ACGGTGATTGCCTTCTTGCTGACCAACGCTTCACAGGCTCTGCAGGCACC
ATCTCCAGCAAGCGCTTGCGGTCGACGCAACACACCAGGGATTACATCGC
AGCTGACCACATCACAACAACAACGGCGCCAACAGTCTACGCGTGGCGCA
CTGGCCACCGTCGACAACCACGCGGAGAGCAACCGCCGCCCGCTTGAAGA
AATTTCCCACAAGTTTCTGGAAGAACTAGAACGAGAGCTTACTCAAGAAC
TCGACCTTGCCGCCGGCGAGCTTTTCACGGAGACCAAGCAGTTAAATGAT
CGCGAGATAAAGCGAGTGTTTGACGAGGATGTTTCTGCTGAGATTTTCGA
TGGTTTTCATGAGGGTGAAGAGGAGGTGGGGGGGGCTCTAATGAAGGCGA
GACAAGCGCTTGCGGTCGACGCAACACACCAGGGATTACATCGCAGCTGA
CCACATCACAACAACAACGGCGCCAACAGTCTACGCGTGGCGCACTGGCC
ACCGTCGACAACCACGCGGAGAGCAACCGCCGCCCGCTTGAAGAAATTTC
CCACAAGTTTCTGGAAGAACTAGAACGAGAGCTTACTCAAGAACTCGACC
TTGCCGCCGGCGAGCTTTTCACGGAGACCAAGCAGTTAAATGATCGCGAG
ATAAAGCGAGTGTTTGACGAGGATGTTTCTGCTGAGATTTTCGATGGTTT
TCATGAGGGTGAAGAGGAGGTGGGGGGGGCTCTAATGAAGGCGAGA
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