mRNA_H-paniculata_contig77272.15751.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig77272.15751.1
Unique NamemRNA_H-paniculata_contig77272.15751.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Match: D7G1M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M4_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 5.440e-15
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 MDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFY 117
            MD+G  APW +Q +CQPLDDIRGYFGEK+AFYFAWLGFY
Sbjct:  447 MDHGNSAPWFLQLFCQPLDDIRGYFGEKMAFYFAWLGFY 485          
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Match: A0A835YL56_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL56_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.860e-13
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    1 MDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFYG 120
            MD G R  W M+P+ QPLDD+R YFGEKLA YFAWLGFYG
Sbjct: 1191 MDEGQRVSWYMRPFSQPLDDVRCYFGEKLAMYFAWLGFYG 1230          
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Match: A0A7S2BNC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNC7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.110e-12
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 1
Query:    4 DNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFYG 120
            DNG   PW M PW QPL +IR YFGE +A YFAWLGFYG
Sbjct:  203 DNGSYCPWPMLPWAQPLSEIREYFGESVAMYFAWLGFYG 241          
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Match: F0Y753_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y753_AURAN)

HSP 1 Score: 64.7 bits (156), Expect = 4.460e-11
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 MDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFYG 120
            ++ G R PW ++PW QPL +IR Y+GEK+A YFAWL FYG
Sbjct:   32 IEKGRRCPWYLKPWSQPLMEIRSYYGEKIALYFAWLSFYG 71          
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Match: E9FRS9_DAPPU (Anoctamin n=8 Tax=Daphnia TaxID=6668 RepID=E9FRS9_DAPPU)

HSP 1 Score: 62.0 bits (149), Expect = 4.160e-10
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    7 NGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFY 117
            +GY A WS  P  QPLD++R YFGEK+AFYFAWLGFY
Sbjct:  295 HGYWARWSKWPKYQPLDNVREYFGEKIAFYFAWLGFY 331          
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Match: A0A8J2S5F9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5F9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.930e-9
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1
Query:    1 MDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFYG 120
            M  G   P  M+PW QPL ++R YFGEK+A YFAWL FYG
Sbjct:  362 MLKGRSCPCYMRPWAQPLMEVRAYFGEKVALYFAWLAFYG 401          
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Match: A0A7S3NJZ7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJZ7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.420e-8
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1
Query:   19 APWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFYG 120
             P  ++P+ QPL +IR YFGEK+AFYFAWLGFYG
Sbjct:  389 CPRYLRPFAQPLMEIRSYFGEKIAFYFAWLGFYG 422          
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Match: A0A7S3XKI6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKI6_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 3.320e-8
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   19 APWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFY 117
             PW + P+ QPL DIR YFGE+LA +FAWLGFY
Sbjct:    4 TPWYLVPFAQPLHDIRDYFGERLALFFAWLGFY 36          
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Match: UPI000C6F70AC (anoctamin-7-like n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=UPI000C6F70AC)

HSP 1 Score: 55.8 bits (133), Expect = 3.590e-8
Identity = 25/36 (69.44%), Postives = 26/36 (72.22%), Query Frame = 1
Query:   10 GYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFY 117
            GY A WS     QPLD IR YFGEK+A YFAWLGFY
Sbjct:   74 GYWAQWSCWRRYQPLDHIREYFGEKIALYFAWLGFY 109          
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Match: A0A3Q4HUU4_NEOBR (Anoctamin n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4HUU4_NEOBR)

HSP 1 Score: 53.5 bits (127), Expect = 3.710e-8
Identity = 24/35 (68.57%), Postives = 25/35 (71.43%), Query Frame = 1
Query:   13 YRAPWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFY 117
            Y A WS     QPLD IR YFGEK+A YFAWLGFY
Sbjct:   31 YWAQWSCWRRYQPLDHIREYFGEKIALYFAWLGFY 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77272.15751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1M4_ECTSI5.440e-1579.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL56_9STRA5.860e-1372.50Calcium-activated chloride channel-domain-containi... [more]
A0A7S2BNC7_9STRA3.110e-1269.23Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0Y753_AURAN4.460e-1160.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
E9FRS9_DAPPU4.160e-1070.27Anoctamin n=8 Tax=Daphnia TaxID=6668 RepID=E9FRS9_... [more]
A0A8J2S5F9_9STRA6.930e-960.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NJZ7_9STRA2.420e-867.65Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3XKI6_HETAK3.320e-866.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI000C6F70AC3.590e-869.44anoctamin-7-like n=1 Tax=Seriola lalandi dorsalis ... [more]
A0A3Q4HUU4_NEOBR3.710e-868.57Anoctamin n=1 Tax=Neolamprologus brichardi TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77272contigH-paniculata_contig77272:438..560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue8.5e-12
Seed eggNOG ortholog2880.D7G1M4
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2514@1,KOG2514@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size123
Cds size123
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.4768689-CDS-H-paniculata_contig77272:437..5601622930959.4768689-CDS-H-paniculata_contig77272:437..560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77272 438..560 -
1691481528.0654492-CDS-H-paniculata_contig77272:437..5601691481528.0654492-CDS-H-paniculata_contig77272:437..560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77272 438..560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77272.15751.1prot_H-paniculata_contig77272.15751.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig77272 438..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig77272.15751.1

>prot_H-paniculata_contig77272.15751.1 ID=prot_H-paniculata_contig77272.15751.1|Name=mRNA_H-paniculata_contig77272.15751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
MDNGYRAPWSMQPWCQPLDDIRGYFGEKLAFYFAWLGFYG*
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mRNA from alignment at H-paniculata_contig77272:438..560-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig77272.15751.1 ID=mRNA_H-paniculata_contig77272.15751.1|Name=mRNA_H-paniculata_contig77272.15751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig77272:438..560- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAACGGGTACCGAGCGCCGTGGTCCATGCAACCTTGGTGTCAACC TCTCGACGACATTCGCGGCTACTTCGGAGAGAAACTCGCCTTCTACTTCG CGTGGCTGGGTTTCTACGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig77272:438..560-

>mRNA_H-paniculata_contig77272.15751.1 ID=mRNA_H-paniculata_contig77272.15751.1|Name=mRNA_H-paniculata_contig77272.15751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig77272:438..560- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAACGGGTACCGAGCGCCGTGGTCCATGCAACCTTGGTGTCAACC
TCTCGACGACATTCGCGGCTACTTCGGAGAGAAACTCGCCTTCTACTTCG
CGTGGCTGGGTTTCTACGGGTGAATGGACAACGGGTACCGAGCGCCGTGG
TCCATGCAACCTTGGTGTCAACCTCTCGACGACATTCGCGGCTACTTCGG
AGAGAAACTCGCCTTCTACTTCGCGTGGCTGGGTTTCTACGGGTGA
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