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Homology
BLAST of mRNA_H-paniculata_contig7694.15703.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI) HSP 1 Score: 132 bits (333), Expect = 1.350e-31 Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 1
Query: 58 ASAMIDDEGEAFARAVFGRFLRQATICRDIDDAIEHMHIVNDNSPTFDIRLGGEARIPVDRQLILALASKKKELLALCETRLQASR 315
AS ++DD GEAFARAVF RFLRQATI RDIDD IEHMHIVND+S TF IRLGG+AR+PV R+LILALA+KKKELLALCE++L+ R
Sbjct: 11 ASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPR 96
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Nucleotide-binding alpha-beta plait domain |
| Ec32 ortholog | Ec-09_001460.1 |
| Exons | 4 |
| Model size | 1076 |
| Cds size | 1074 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7694.15703.1 >prot_H-paniculata_contig7694.15703.1 ID=prot_H-paniculata_contig7694.15703.1|Name=mRNA_H-paniculata_contig7694.15703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=358bp
SQLRKPFIASRASVMSHETASAMIDDEGEAFARAVFGRFLRQATICRDID DAIEHMHIVNDNSPTFDIRLGGEARIPVDRQLILALASKKKELLALCETR LQASRQAAATAAAAAAAAAAAATANTSSSTCHSPCATTTSPADGPTPTNS GQHQQQAENASDRTYAMASGALLPSSLPPPPTAHLLVFPPPAALAATGSS SHFASSTEMGGATATAAASTTAMAARSSSAVAASVSAAAPVATISGAVST VAGVGKVAVAQQSQQQKQHVAVGESAGEVAERTAPPVVVAQHAAPQTTTT TTTTTTTTPPPPPAAKSIPVVPATASSPGYAPPQPASAAPPFREPRDRGG PRTVFVRK back to topmRNA from alignment at H-paniculata_contig7694:777..7766- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig7694.15703.1 ID=mRNA_H-paniculata_contig7694.15703.1|Name=mRNA_H-paniculata_contig7694.15703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6990bp|location=Sequence derived from alignment at H-paniculata_contig7694:777..7766- (Halopteris paniculata Hal_grac_a_UBK monoicous) AGTCAATTGAGGAAGCCCTTCATCGCGTCTAGAGCTTCAGGTAAGACTTC
CTTTTTTAGTGCTGAAATGATTGATGATCGAGAGAGGCATACAGCAGTAC
TTCAGGCCGTCCGTTAGAGGACACAGCGGGTAGAAACGAGTTGCAGTGAG
GAGGGCTCTCATGTTTTGCATGACTGGAGGGTTCGTGCTGTATACCATAT
TATTAAAATATTCGTGTGTCTGGTGTAGACCTTACGACCCTCCGCGTGAT
GGGATTCAGTCAATGCACGAAACTCGTCAGGTCCGTGTTGGTGCAGTGCT
GAGTGCCAGGGAGTGCGAGGGTAACATGGAGTGGGGCGGTAACTCGGGTG
ACCGTTTAGCCATGAACACTTCTTGCCGATAGCACACTAGTAGATGTTCA
GTGAACCTTGGGTGATGCCGGTATGCCCGAGTCTTGAGTAACACCTCTAC
ACTGTTTCTTTTATCGATATGGCAGCTTTTGACTTGCAGCAGTACAGTTC
CGTGTGCAAGTCGTTGCTTCATGCACATGGATTTACTTCGCCTCCTCCAG
GCTCTCTCTCGTTCTCTCTCTTAGCGCCATGTGTATCCACTTCCTTCTTG
GCTCCATCTTTCGGTTTTTCGGCGTAATATGAACAAATCACATCGCTCCA
TTCGTAAAGCAACAACTAGGGCTGTTAGCAGGAAAAGGTATAGCTTAGTC
CTTATTGGCCATTTGAAGGCACCGCGTAGGGCGGCTACTGCATTACTCGC
ATGTGCTCTACTGTACCAACGCAGTTAGGTCAAATATAAACTCCACCAAC
ACACACTAGGATCGACGGCTTAGGGTTAGCGTTGGACTTGGTTGTGGACG
TGTTGCACGCGCTCTGCCAACGTAGGTAGGTCACATGTTAGCTCTGCGTA
CCAGATCACAGACACATACACACACCTGCCAATGCAGTTGTGTCATGGAA
CCAGGATGGCAAGCCGCATGTTTGGTTCTCGTCATTTAACGCAAAATAAA
AACCACCCCCACACGGAAAATTTTACATCGCCTCGTTCAAAAAGGACAGC
AAAAAAAACTCTCGGATTGGTCGGTCAAAGGTACAGAATCGACCAAAGCA
AGTGGCAGTCTTACGGCGAGAAAACTTCGAAGTCCAGCCTGTTCGGAAAA
GAAAGGCTATAAAGGCTACTTCTATGCTGAGGGATGTTTGGGTGTTCATC
TCTCTTCGGGTGGCGCCTCTGGGAGAGAAACCTTAAGTTGATTAAAGCTC
TCGTTTCCATCTTTCTAGCCCACCCCTCAAATATTGTCACAACTTAATTC
TTCAAAACCAAAACACCGATTTACATATTTCGGAACAAAAAAATAAGCAT
TTTCGCTAGTTTCTCGTCACTCCCAAAATGTGCCGTAGCTTGCGGTTAGA
TTTGGAAAGCCTGTGATGTCAGCTTTCGAATTATACCTGACACGGGCTAT
AGCTCCCCGCCCTACAAGATTTAAAAAACCAAAAACAATGGAATGTCAAT
TTGGCATTTTTTTTTGTACGACCAACGCGTACAATTGTCATTATCCAAGA
GTAGAGGTCTCATCACCGATGAGACCTCCGCATCGCGGTCTGCAGCAAAC
AACTTTGAGGAAAAGATGGCGCAGTATGTCGCTATGTAGATGGAATCGAC
TGCATTGTTTTGAATGTGCATGACAATGTACATCTAATAATATATGTTTT
GAATGTATACGGCGTCCCCCTTTTAAAATATATATAGTTATAGCGCTTAA
CGTGTTGTACTTCATTTCACCGAAGTAATAATAATAATAACAATACTGAT
AAAATGCCTCTATGGAAACCTATTCAAAAATACAGGATGGAATTCCGAAG
GCAAAGTTATATATATTTTACCAGGATTACGAATATACATATTTTGGATT
TTTTCCGCCAGTACTACTGAAAGTTATGATGACACAAAACGTTTTCTCAG
GAGTTTTTAACACTTGCGACCAATCCAAGTGAATTTGACCCTTACGATAC
CAGCACACAGTACGTAGCGAGCAAATACACGTTTTTTTTTTTTTCCATTG
TCACGTGTACATGTTTTAAATCGCATTCCCCATTTCGTTACCCCCCCCTC
CCCCTCCTTTCCCCTCCCGTCCCAACTCTAATTCGCACAACCAACTCATT
CTCCGCCCATTTAGTCATGTCACATGAAACAGCTTCCGCGATGATCGACG
ACGAGGGCGAGGCCTTCGCTCGGGCTGTGTTCGGCCGCTTTTTGCGGCAA
GCAACCATCTGCCGAGACATCGACGACGCCATCGAGCACATGCATATCGT
GAACGACAACTCTCCGACGTTCGACATTCGCCTCGGGGGGGAGGCGCGGA
TCCCTGTCGACCGCCAGCTTATCCTGGCGCTTGCCTCCAAGAAGAAGGAG
CTACTGGCATTATGCGAGACTCGGCTGCAGGCGTCTCGGGTACGTGCAGC
TGGTCTAGGGTTGCAACTACTAGCGTGTCTCGTGTCGTTCGTGGAGGGTT
AAACGAGAAACAAATGTGAATTATGTAAATGTAGAAAACATGGCCATGAT
CGTAAAACGAAATGGAGGCGTGTAACCTCAGCATCTTGAAGTTTTCTGGG
TTAGCCATCCACAAACTGGACAGACTAGAGCAGGGTGGAGTTACACGATG
CTCACTACACCCCCAGTTCTTTCAAGGAGAAACGCTGGGTACCTCCATCG
AATTGTATTCGAGTTATTCAATGGCTGCTAATCTTATTTTTCTGCAGGCC
CTCATAGCCTGCGTTATTGTGGGTGTGTGGCCGATACGACCCGCCTAAAA
ACGACGCTGTCCGTGTGAGGATCGTGCAAAAATTGTGTATAATGCACGAC
GAACATATGCAAAAAGCCCATAACAAGGACAGGCGGGGGGGGAGGGGCAC
AGGGTAGAACATAAGTTTCATGGCAGTGTTGTGGACCCCTCGGTTACGGT
TGGGGGAGTTTAGATCGCGATTCGGGAGGCAAAGTGGTTCAAAACACCGA
GCAAAAGAGCACACAAGAGGACACATCACACCGTCTGCTGTAGAATTGTC
CGCTGCGTACCCAGAGCGTGCCACGCCGTCATTTAATGTTCATATCTCGT
CAACGGCAGCGAATTTCACAATTCCTAAATTATCAACTTAGTATAACTTT
CCAAAGTTCTCACAGGCACCGATTGTACGTTTTGCCTCTGCAGCTAAAGC
TCGCCGCGAAAAACTGAAAAACTCCGAAAAAAAAAAATGTAGTTCTTGTA
TGCACGCGCTTGCAGTGTGCGCTGCACAAAGTTGTTGAAGGCAAGACAGG
CATCATGAGAGAGCTAATATCCTCGACATCACTTACGTACTTGTATATCT
GTGAAGAAGACTTTGTATGTCGACGTGTACGAGAAAGTGTGTTGTGTTGT
GTAAAAAAACTTGCTTCTCGCCAAAAAACTGCTCAAGGTTAGAATCGTTT
ATTATGGTCCTTCGAAGTATGTTGATAGTAGGTGTTGTTACGTACCTGTA
TAAACTCAACCGACTCTACGTATAGGACAGAGAAAGTTCATTGTTAGGAG
CGGGGGTAATGTGCCGGCTGTGACTTAGGCAGTAAAGTTAACGATGACAG
TCTATAGTAAAGTCTACATGTTTTTTCCCACGTTAAAAAACAAACCTTAG
CCAAATTAATGACAAATGTCTACACAATTTCCCTCTCCCCTGATCTTTCA
GCAAGCGGCAGCAACAGCAGCAGCAGCGGCGGCGGCGGCAGCGGCGGCAG
CCACGGCAAACACCTCATCATCCACATGTCACTCCCCATGCGCGACGACG
ACCTCTCCCGCGGACGGACCCACACCCACCAACTCGGGACAACACCAGCA
ACAAGCCGAAAATGCGAGCGATCGGACCTATGCGATGGCTAGTGGCGCGC
TATTGCCTTCGTCGCTGCCGCCTCCGCCGACCGCACATCTACTGGTATTT
CCGCCTCCAGCCGCCCTTGCTGCAACGGGCTCGTCGTCGCACTTTGCCTC
GTCTACTGAGATGGGCGGTGCTACTGCTACTGCTGCTGCTTCTACTACTG
CCATGGCTGCGAGGTCTAGCAGTGCGGTTGCTGCATCGGTGTCGGCGGCG
GCGCCGGTGGCAACGATATCTGGCGCGGTATCAACGGTAGCGGGGGTGGG
CAAGGTCGCAGTCGCCCAACAATCACAACAACAAAAGCAGCACGTTGCTG
TTGGGGAGAGTGCTGGTGAAGTGGCGGAACGAACAGCGCCACCCGTCGTC
GTCGCGCAGGTGGGTCAGTAGGGAGTTAGTCGTGTGCATGATAGGGTCCG
GTTCCATCTGATCTGGCCCGGTCCGGCCTGATCGGGTCCGATCCGGTCCT
CTGAAGAAAAATGCTCTGGTCCTGGTGGCCAACCCTTGATGGAGCTTACC
GAAAGGAAAAGTCCGGTCCGGTCCGGTGCGCTCCGATCCGATCCACCCAA
AAAACATGTGACGGTTCTGGTAGACAAACCGCTGGCGGAGCTGACAATCA
GAAGATAATTTGACGGTGTTGGTTTCCCCATCAGGTTCGTGGTTTTACCT
CTCACGCAATGAATTCGAAACCAAAGGCCATGAAAGCAGGCGATTGAAAG
CTATTTACCGAGGCACATAGTCCGTAGGACCGAAACTGTTGCTCTACTCG
TACCAGATAACGGAAGTATGAATCCGTTCGACCGACCCAACGACATGCGA
ATCGATGCGTGTGGAACTGTTTCGATTATGCGGTGTGCACCCATGTTTTG
GTTTTCGATTTTGGACTCCGCGTGATTGTTGAGATGCGCCAAGCTGAATT
TCGGCTATATACATCCCGCAAAACTGTCTTAATAAAAAAAATGGTGTAGT
GAAAACAGCTTTATTTTTCAGTATATTTTTATGCTCAACAATCTTGACGG
TTTGTTTTTCATCGGGGAGAGAAAGTTTGAACTCGTTCCACCGACTCAAC
ACACGGAGCCGTCTCAATCATGCAGTGTCTACCCACGTTTGGATCATCGA
TTTGAACCACTTGATTGTCGAGAGATGGCGCGTTGAATGGAGGCACATCA
GGTGAAAGAGCAACAATCTGATCATGCTAACAATATACATCCGTGGTAGC
TAGCTTGATCACGCTGCTGGGCTTACAATGAAGTGTTGATCGTACTTCAA
GTACTTGAAGAAATGGATAATGACCTCGTTACGAAAAAAAAGTCGCCCCA
AGCCTATCAATTTTTTTTTTTTTCTAATACCTGTACTGCGGTACGGTGGG
ACACGGTAACAAATCCCTCGCCGAATCTCAAGAAACATGGGATGATTTTT
TTTAATGCTGATTTTTGGATCAGCACCGTGAGAGCGAGTCGCTATATTTT
TTTTCTTGCGGCTGTTGCGATTTTTTTTTAGATATCAATCTATTATAGTC
TAAGCAACGACGTCTACCGACAAAAGGAAAGCTGAAATTTGTTTTTTGCG
CCAATATCTCGCCTTGGCAAAAAAAAATGTAAAATAGTGTTCGCAACGGT
TTGTAATGTATTTTGTGTATCGAGATATTGTTTTTTACCTTCGAACTATT
CAGGGTTGAGGTATATATAGTGGTTTTATGTACTGGACACTCGCGTTGTA
TTCGATGTATCCGCATATAATCTGTCGTGTCTCATTTCACTAACTCCGAA
TAATCATTTTTGATTCTTTTCTATCACACATGGAAAGGTTGGATGAATGC
ATTCCAGCACAGAACAGAGTCAGATTATGCTCTCGTTCCTGACACCGTCG
CTTTGTATTCAAATGCACTCTACCTGCATATCGTCTTCCGTGTCTCGTTC
GCTCCGTGTATAGTCATTTTTCGCTCTTTCTACATCGCCTTCCCTACTGG
ATCCACCCCGTACAGGTAGATTTTCCACAGACCGGGATGCTGTACTACTG
CCTGTAAATATATGCCCTCAAAACCTTTCTACTCCCCCGTATGAGATGTA
GTTTCGGAACAAAAACGGGATACCTCACACAATGCCACGGACCTACGCCC
GAACGGGTAGGGTAGCTCGTGTACTGAGCATGACTGGAAGTCAGCTCCTT
CCCTCACAGCACTTACGAGGTATGTAGACAGAGGCTGCATATGCCGGGGT
GGAAAAAAATGACTGGGAGTCTAGTCAGAGGTCTTTTAGTAGGTGAAAGT
CCTACACTGCCTACTTGGTTCGGCCGAGCCGGGGTGGCGCCTACCCCTCA
GAGGAATAAATAACTCTGTTCTGTTGAAGGGAATGTAGACATACTTTGGG
TGAATACCTGAATATGGAAGCAGCGGAAACGGTTTTTGCCTCAGCCTTCC
GGGGGTTAAAAAACCCCCCAAAAAAACCTCACACAATGGAAAAGTGGAAC
GCTGCCGTCGTTATGGGCAAAACCATGCCAGCTACTAGTAGTACCTACCC
CTATGCTGCCCGTCGTGTCTGTAGTAAACAAAAAGGCCCGTCTTCACGGC
GGGTAGCGGTTCCCTATCCCCGGTTTTGTATCATGCCGTATCCTTCCTTT
TCTCGTGTTTCGAGGCGGAGATAGAGTAGACGGGGTTGCGTATAGGGTCC
CGGGGGTCGAGATAATAAGAGGGTTCACGTTTGCCCCCCTCAACAGTGGC
CCCCGTAATACAGTGTGTCTCCTCCTTTAATTTTTTCGGTTCGTGGAATT
ATGTCAGTCCACTGTATTAAACTTACTGAGCATACCTCGAATTGTAACCC
CTCATGTTTAACCCACCCCTCTCCCTAATCTGTGCGCACCACCCTCCTGC
CTGTCGGTGTCAACGGCCCGACCGGATTTTTTTCCAGCATGCCGCGCCGC
AGACAACGACGACGACGACGACGACGACGACGACGACGCCCCCCCCCCCA
CCGGCTGCCAAGAGCATCCCTGTCGTCCCAGCAACAGCGAGTTCGCCTGG
CTACGCGCCACCGCAACCAGCGTCTGCAGCTCCGCCATTCCGAGAACCTC
GAGATAGAGGAGGACCGAGGACGGTTTTTGTGCGAAAGGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig7694:777..7766- >mRNA_H-paniculata_contig7694.15703.1 ID=mRNA_H-paniculata_contig7694.15703.1|Name=mRNA_H-paniculata_contig7694.15703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2148bp|location=Sequence derived from alignment at H-paniculata_contig7694:777..7766- (Halopteris paniculata Hal_grac_a_UBK monoicous) AGTCAATTGAGGAAGCCCTTCATCGCGTCTAGAGCTTCAGAGTCAATTGA GGAAGCCCTTCATCGCGTCTAGAGCTTCAGTCATGTCACATGAAACAGCT TCCGCGATGATCGACGACGAGGGCGAGGCCTTCGCTCGGGCTGTGTTCGG CCGCTTTTTGCGGCAAGCAACCATCTGCCGAGACATCGACGACGCCATCG AGCACATGCATATCGTGAACGACAACTCTCCGACGTTCGACATTCGCCTC GGGGGGGAGGCGCGGATCCCTGTCGACCGCCAGCTTATCCTGGCGCTTGC CTCCAAGAAGAAGGAGCTACTGGCATTATGCGAGACTCGGCTGCAGGCGT CTCGGTCATGTCACATGAAACAGCTTCCGCGATGATCGACGACGAGGGCG AGGCCTTCGCTCGGGCTGTGTTCGGCCGCTTTTTGCGGCAAGCAACCATC TGCCGAGACATCGACGACGCCATCGAGCACATGCATATCGTGAACGACAA CTCTCCGACGTTCGACATTCGCCTCGGGGGGGAGGCGCGGATCCCTGTCG ACCGCCAGCTTATCCTGGCGCTTGCCTCCAAGAAGAAGGAGCTACTGGCA TTATGCGAGACTCGGCTGCAGGCGTCTCGGCAAGCGGCAGCAACAGCAGC AGCAGCGGCGGCGGCGGCAGCGGCGGCAGCCACGGCAAACACCTCATCAT CCACATGTCACTCCCCATGCGCGACGACGACCTCTCCCGCGGACGGACCC ACACCCACCAACTCGGGACAACACCAGCAACAAGCCGAAAATGCGAGCGA TCGGACCTATGCGATGGCTAGTGGCGCGCTATTGCCTTCGTCGCTGCCGC CTCCGCCGACCGCACATCTACTGGTATTTCCGCCTCCAGCCGCCCTTGCT GCAACGGGCTCGTCGTCGCACTTTGCCTCGTCTACTGAGATGGGCGGTGC TACTGCTACTGCTGCTGCTTCTACTACTGCCATGGCTGCGAGGTCTAGCA GTGCGGTTGCTGCATCGGTGTCGGCGGCGGCGCCGGTGGCAACGATATCT GGCGCGGTATCAACGGTAGCGGGGGTGGGCAAGGTCGCAGTCGCCCAACA ATCACAACAACAAAAGCAGCACGTTGCTGTTGGGGAGAGTGCTGGTGAAG TGGCGGAACGAACAGCGCCACCCGTCGTCGTCGCGCAGCAAGCGGCAGCA ACAGCAGCAGCAGCGGCGGCGGCGGCAGCGGCGGCAGCCACGGCAAACAC CTCATCATCCACATGTCACTCCCCATGCGCGACGACGACCTCTCCCGCGG ACGGACCCACACCCACCAACTCGGGACAACACCAGCAACAAGCCGAAAAT GCGAGCGATCGGACCTATGCGATGGCTAGTGGCGCGCTATTGCCTTCGTC GCTGCCGCCTCCGCCGACCGCACATCTACTGGTATTTCCGCCTCCAGCCG CCCTTGCTGCAACGGGCTCGTCGTCGCACTTTGCCTCGTCTACTGAGATG GGCGGTGCTACTGCTACTGCTGCTGCTTCTACTACTGCCATGGCTGCGAG GTCTAGCAGTGCGGTTGCTGCATCGGTGTCGGCGGCGGCGCCGGTGGCAA CGATATCTGGCGCGGTATCAACGGTAGCGGGGGTGGGCAAGGTCGCAGTC GCCCAACAATCACAACAACAAAAGCAGCACGTTGCTGTTGGGGAGAGTGC TGGTGAAGTGGCGGAACGAACAGCGCCACCCGTCGTCGTCGCGCAGCATG CCGCGCCGCAGACAACGACGACGACGACGACGACGACGACGACGACGCCC CCCCCCCCACCGGCTGCCAAGAGCATCCCTGTCGTCCCAGCAACAGCGAG TTCGCCTGGCTACGCGCCACCGCAACCAGCGTCTGCAGCTCCGCCATTCC GAGAACCTCGAGATAGAGGAGGACCGAGGACGGTTTTTGTGCGAAAGCAT GCCGCGCCGCAGACAACGACGACGACGACGACGACGACGACGACGACGCC CCCCCCCCCACCGGCTGCCAAGAGCATCCCTGTCGTCCCAGCAACAGCGA GTTCGCCTGGCTACGCGCCACCGCAACCAGCGTCTGCAGCTCCGCCATTC CGAGAACCTCGAGATAGAGGAGGACCGAGGACGGTTTTTGTGCGAAAG back to top
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