mRNA_H-paniculata_contig7693.15701.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7693.15701.1
Unique NamemRNA_H-paniculata_contig7693.15701.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7693.15701.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.990e-19
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 2 
Query:  182 RSLCMDSFIIVLTKSCSEGECYLPIKTLQLVSLEMCMACRMFSTLHMRVAIDTPRRLWVTPGDQPSPLTSSRLRQCRLSVSRVPLLRTRAVTWTMSASAEFMSIDSYLLANVEYVKFGIGFNRSLEDVVWPPRVRRILF 598
            RS C+ +  + L ++C     Y   K LQL SLE+CMACR + TLH+ V   TPRRL +   D PSP         RL  +RVP LR R  TW +  +A  M    +   +V+Y++FG  F+ SL+ +VWP R++ I F
Sbjct:  133 RSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRL-LAAADAPSPHPK------RLCGTRVPRLRARRATWNVP-TASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEF 263
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BLAST of mRNA_H-paniculata_contig7693.15701.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.400e-15
Identity = 52/136 (38.24%), Postives = 69/136 (50.74%), Query Frame = 2 
Query:  191 CMDSFIIVLTKSCSEGECYLPIKTLQLVSLEMCMACRMFSTLHMRVAIDTPRRLWVTPGDQPSPLTSSRLRQCRLSVSRVPLLRTRAVTWTMSASAEFMSIDSYLLANVEYVKFGIGFNRSLEDVVWPPRVRRILF 598
            C+++  + L ++      Y   K LQL SLE CMACR + TLH+ V +  PR L       P           RLS  RVP LR R VTW M  +AE  S   + L +++++ FG  F  SLE V WP R+  I F
Sbjct:   36 CLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQ-------HPKRLSRRRVPRLRARHVTWNMPTAAELRS-PIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAF 163
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BLAST of mRNA_H-paniculata_contig7693.15701.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.150e-13
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 2 
Query:  182 RSLCMDSFIIVLTKSCSEGECYLPIKTLQLVSLEMCMACRMFSTLHMRVAIDTPRRLWVTPGDQPSPLTSSRLRQCRLSVSRVPLLRTRAVTWTMSASAEFMSIDSYLLANVEYVKFG 535
            RS C+++ +I L ++C+    Y   K LQL SLE C+ACR + TLH++V    PRRL +   D P P        CR   +RVP LR R VTW M  +AE +SI  + + +V+ +KFG
Sbjct:  110 RSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRL-LARADAPPPHPEL---LCR---TRVPRLRARRVTWGMRKAAE-LSIPIFAMTDVDCLKFG 219
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BLAST of mRNA_H-paniculata_contig7693.15701.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.650e-13
Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 2 
Query:  179 GRSLCMDSFIIVLTKSCS--EGECYLPIKTLQLVSLEMCMACRMFSTLHMRVAIDTPRRLWVTPGDQPSPLTSSRLRQCRLSVSRVPLLRTRAVTWTMSASAEFMSIDSYLLANVEYVKFGIGFNR--------SLEDVVWPPRVRRILFDGNIGRLTSMFXXXXXXXXXXXSLQQLTFG 688
            G S C+D+F++ L ++C   E   Y+    LQLVSLE+C ACR   TLH+RV   TP  LW    +  +  T++R  +  +S SRVP+++   +TW +      M +     A    V+ G G  R        SLE  VWP R++R++F+ ++   T+ +           SLQQL+FG
Sbjct:    5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTT--TNNRSPKVCIS-SRVPVVQAFGLTWALP-----MGVLQQRSATE--VRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPA---------SLQQLSFG 165
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BLAST of mRNA_H-paniculata_contig7693.15701.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.930e-8
Identity = 49/149 (32.89%), Postives = 73/149 (48.99%), Query Frame = 2 
Query:  179 GRSLCMDSFIIVLTKSCS--EGECYLPIKTLQLVSLEMCMACRMFSTLHMRVAIDTPRRLWVTPGDQPSPLTSSRLRQCRLSVSRVPLLRTRAVTWTMS-------ASAEFMSIDSYLLANVEYVKFGIGFNRSLEDVVWPPRVRRILF 598
            G    +D+ I+ L ++C   E   Y+    LQLVSLE+C ACR    LH+ V  DTP  LW +   + +P  S R  +   S +RVP ++    TW +        A+AE   +    L +      G  F  S+E VVWP  ++R++F
Sbjct:   85 GGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTP--SQRSPEVCTS-NRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQD------GHSFAASVESVVWPESLKRLVF 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7693.15701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPY7_9PHAE5.990e-1940.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE5.400e-1538.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI1.150e-1341.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNI6_9PHAE2.650e-1333.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK8_ECTSI2.930e-832.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7693contigH-paniculata_contig7693:639..2709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size911
Cds size798
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7693.15701.1prot_H-paniculata_contig7693.15701.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7693 751..2709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930952.2147665-UTR-H-paniculata_contig7693:638..7501622930952.2147665-UTR-H-paniculata_contig7693:638..750Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7693 639..750 +
1691481525.1728141-UTR-H-paniculata_contig7693:638..7501691481525.1728141-UTR-H-paniculata_contig7693:638..750Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7693 639..750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930952.228707-CDS-H-paniculata_contig7693:750..8171622930952.228707-CDS-H-paniculata_contig7693:750..817Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7693 751..817 +
1691481525.1817088-CDS-H-paniculata_contig7693:750..8171691481525.1817088-CDS-H-paniculata_contig7693:750..817Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7693 751..817 +
1622930952.2453468-CDS-H-paniculata_contig7693:1978..27091622930952.2453468-CDS-H-paniculata_contig7693:1978..2709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7693 1979..2709 +
1691481525.1898544-CDS-H-paniculata_contig7693:1978..27091691481525.1898544-CDS-H-paniculata_contig7693:1978..2709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7693 1979..2709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7693.15701.1

>prot_H-paniculata_contig7693.15701.1 ID=prot_H-paniculata_contig7693.15701.1|Name=mRNA_H-paniculata_contig7693.15701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=266bp
MYSTGSKAAAAGIFQDELGRQSGRSLCMDSFIIVLTKSCSEGECYLPIKT
LQLVSLEMCMACRMFSTLHMRVAIDTPRRLWVTPGDQPSPLTSSRLRQCR
LSVSRVPLLRTRAVTWTMSASAEFMSIDSYLLANVEYVKFGIGFNRSLED
VVWPPRVRRILFDGNIGRLTSMFNQPIDEVVWPSSLQQLTFGEKFNQPIE
RVAWPSSLQQLTFGEKFNQPIEGIAWPASLQQLIFGRNFDKPIGQVTWPS
SLQQLTFRKDFNQPIE
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mRNA from alignment at H-paniculata_contig7693:639..2709+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7693.15701.1 ID=mRNA_H-paniculata_contig7693.15701.1|Name=mRNA_H-paniculata_contig7693.15701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2071bp|location=Sequence derived from alignment at H-paniculata_contig7693:639..2709+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTGTACGGCCAGTCAAGGTGTTGCAGCGAATCCGCACTGTGCGGTCT
TTCATCGTCGCAGCCTCTGATACATAGGTGTGCTTTTGAGGGGCAGTACG
GCCTGTTCTACGATGTACTCCACCGGATCGAAAGCGGCGGCAGCTGGCAT
CTTTCAAGACGAGCTGGGTAGACAATCGGGTGAGAGAGGCGCCAGACAGG
TCTTGACACTGTATGAATCTATCGATTTGGGGTAGTATGTTTCAACCGGC
GGTAATACGCTGACTGCCAAGGGCATGTCTGTGTCAAGTAAAAGGGTGGG
GCCTCTGGGATTCTGAAGGTGTCTCATGATAGCTAGAATAATATTAAAAA
ACAGCACATGTTAATGGTATTGAAGAACATAAAATACACCGCCGGAGATC
AAGTCATTGACATAAGGCACATTTGACAGTGAAGAAAAGGTATGAGAAGG
AGGCTGTCCGTATCAAGAGACAGTTCATATTGTGGGACTCGCTACTAGTT
TTCCTTTTGATACCCGTACCGATGGAAATGTTGTTATTCCAATGAGTAGA
GAAATAAATAATGTGATCCCGGGACATAATTGCCCCCCCAACGCCCTTGC
AGAACACTCGAAATATACTCGTAGAAAGTAGCATGGTACGCGTTCTTCTA
TTTCTGAACAAGGATTCGAAATCTGAAAGGATTTTTGCAAAATTCGAACA
GTCTGGGCTAATTGTTTTCGAAGTCATGACGCTTCGAAGGTTTTTGAAAC
ACCTTACGCGGGGCAAGACGGAATTATCTCGGAACAATTCGCCGAACGAA
TTTGGAGCGTACTCACGGTCCTAGTCCTCGGATATGAATGTTTCCGTTCC
TCGCGCGAGAGGGCTCAAACGATGTGCACGGTTATGAGGAGAAAACGTTC
ATCTGTTTGATGACCTCTGTACATGAATTTTCAGTGGTCGAGATGCTTGG
CAAGTAGGTCGAGATAATTCAGAGTAGTTTAGTGCTTACTTATGGTGCTG
AGTGTTTGGAAGCGAGGTTTCGTCGAGGCAATAATGTCGGCTACATTTCC
AAGAGCATGCAGTCGAAAGAGGAGCCATGGCGGCCACTGACTATCGTACC
AATAGTTGTACCCATCAAGATCCAGCGGCGCTTATCGCTGAGCAACCATG
TGAGGCCGAGTTTTCGTCGCGTGAAACTATCTTTGTGGATGAGCAGCGGT
AGTAGGACTGCAGTGATGCTTGTGTACGGCGACACCGTATTTTGACTCCA
GTAATACTCGTGTTCGGCCATTGCACTGTTGCGCACAACTTTACTCGTAC
ATGTCAGCCAGCGATGTTTGTTCGATTGCCGTTGCTTCAGGTCGTAGCCT
CTGTATGGATTCCTTCATCATCGTGCTCACCAAGTCTTGCTCAGAGGGAG
AGTGTTACTTGCCCATCAAGACGTTGCAGCTGGTGTCGCTGGAGATGTGT
ATGGCGTGCCGCATGTTCAGTACGCTACACATGAGGGTGGCGATAGACAC
ACCGCGACGACTGTGGGTGACTCCTGGCGATCAACCATCGCCTTTGACGA
GCAGCAGACTGCGGCAGTGCCGTTTATCTGTGAGTCGCGTGCCGCTGTTG
CGGACACGTGCGGTGACATGGACGATGTCAGCTAGCGCCGAATTCATGTC
TATTGACAGCTATCTCTTGGCGAATGTGGAATACGTAAAATTCGGGATCG
GATTCAACCGCAGTCTGGAGGATGTAGTATGGCCTCCGAGGGTTCGGCGG
ATCTTGTTTGACGGAAACATTGGGCGCTTGACCTCCATGTTCAACCAGCC
GATTGATGAGGTAGTGTGGCCTTCGTCGTTACAGCAGTTGACGTTCGGGG
AGAAATTCAACCAGCCCATCGAGCGTGTGGCGTGGCCTTCCTCGTTGCAA
CAGTTGACGTTCGGGGAGAAATTCAATCAACCCATCGAGGGGATCGCATG
GCCTGCCTCACTGCAGCAGTTGATATTCGGGCGGAACTTCGACAAGCCCA
TTGGGCAGGTGACATGGCCTTCTTCGTTGCAGCAGTTGACATTCAGGAAG
GACTTCAACCAGCCCATTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7693:639..2709+

>mRNA_H-paniculata_contig7693.15701.1 ID=mRNA_H-paniculata_contig7693.15701.1|Name=mRNA_H-paniculata_contig7693.15701.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at H-paniculata_contig7693:639..2709+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTCCACCGGATCGAAAGCGGCGGCAGCTGGCATCTTTCAAGACGA
GCTGGGTAGACAATCGGATGTACTCCACCGGATCGAAAGCGGCGGCAGCT
GGCATCTTTCAAGACGAGCTGGGTAGACAATCGGGTCGTAGCCTCTGTAT
GGATTCCTTCATCATCGTGCTCACCAAGTCTTGCTCAGAGGGAGAGTGTT
ACTTGCCCATCAAGACGTTGCAGCTGGTGTCGCTGGAGATGTGTATGGCG
TGCCGCATGTTCAGTACGCTACACATGAGGGTGGCGATAGACACACCGCG
ACGACTGTGGGTGACTCCTGGCGATCAACCATCGCCTTTGACGAGCAGCA
GACTGCGGCAGTGCCGTTTATCTGTGAGTCGCGTGCCGCTGTTGCGGACA
CGTGCGGTGACATGGACGATGTCAGCTAGCGCCGAATTCATGTCTATTGA
CAGCTATCTCTTGGCGAATGTGGAATACGTAAAATTCGGGATCGGATTCA
ACCGCAGTCTGGAGGATGTAGTATGGCCTCCGAGGGTTCGGCGGATCTTG
TTTGACGGAAACATTGGGCGCTTGACCTCCATGTTCAACCAGCCGATTGA
TGAGGTAGTGTGGCCTTCGTCGTTACAGCAGTTGACGTTCGGGGAGAAAT
TCAACCAGCCCATCGAGCGTGTGGCGTGGCCTTCCTCGTTGCAACAGTTG
ACGTTCGGGGAGAAATTCAATCAACCCATCGAGGGGATCGCATGGCCTGC
CTCACTGCAGCAGTTGATATTCGGGCGGAACTTCGACAAGCCCATTGGGC
AGGTGACATGGCCTTCTTCGTTGCAGCAGTTGACATTCAGGAAGGACTTC
AACCAGCCCATTGAGGTCGTAGCCTCTGTATGGATTCCTTCATCATCGTG
CTCACCAAGTCTTGCTCAGAGGGAGAGTGTTACTTGCCCATCAAGACGTT
GCAGCTGGTGTCGCTGGAGATGTGTATGGCGTGCCGCATGTTCAGTACGC
TACACATGAGGGTGGCGATAGACACACCGCGACGACTGTGGGTGACTCCT
GGCGATCAACCATCGCCTTTGACGAGCAGCAGACTGCGGCAGTGCCGTTT
ATCTGTGAGTCGCGTGCCGCTGTTGCGGACACGTGCGGTGACATGGACGA
TGTCAGCTAGCGCCGAATTCATGTCTATTGACAGCTATCTCTTGGCGAAT
GTGGAATACGTAAAATTCGGGATCGGATTCAACCGCAGTCTGGAGGATGT
AGTATGGCCTCCGAGGGTTCGGCGGATCTTGTTTGACGGAAACATTGGGC
GCTTGACCTCCATGTTCAACCAGCCGATTGATGAGGTAGTGTGGCCTTCG
TCGTTACAGCAGTTGACGTTCGGGGAGAAATTCAACCAGCCCATCGAGCG
TGTGGCGTGGCCTTCCTCGTTGCAACAGTTGACGTTCGGGGAGAAATTCA
ATCAACCCATCGAGGGGATCGCATGGCCTGCCTCACTGCAGCAGTTGATA
TTCGGGCGGAACTTCGACAAGCCCATTGGGCAGGTGACATGGCCTTCTTC
GTTGCAGCAGTTGACATTCAGGAAGGACTTCAACCAGCCCATTGAG
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