mRNA_H-paniculata_contig76894.15698.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76894.15698.1
Unique NamemRNA_H-paniculata_contig76894.15698.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76894.15698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76894contigH-paniculata_contig76894:77..286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size146
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.7320714-CDS-H-paniculata_contig76894:76..1531622930951.7320714-CDS-H-paniculata_contig76894:76..153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76894 77..153 -
1691481524.9311047-CDS-H-paniculata_contig76894:76..1531691481524.9311047-CDS-H-paniculata_contig76894:76..153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76894 77..153 -
1622930951.747754-CDS-H-paniculata_contig76894:219..2861622930951.747754-CDS-H-paniculata_contig76894:219..286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76894 220..286 -
1691481524.9524386-CDS-H-paniculata_contig76894:219..2861691481524.9524386-CDS-H-paniculata_contig76894:219..286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76894 220..286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76894.15698.1prot_H-paniculata_contig76894.15698.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76894 77..286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76894.15698.1

>prot_H-paniculata_contig76894.15698.1 ID=prot_H-paniculata_contig76894.15698.1|Name=mRNA_H-paniculata_contig76894.15698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
LPVSRIGGIPERLRLRDVRDGKGRDVLLVGFGDDFSDALARDCWLLL*
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mRNA from alignment at H-paniculata_contig76894:77..286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76894.15698.1 ID=mRNA_H-paniculata_contig76894.15698.1|Name=mRNA_H-paniculata_contig76894.15698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig76894:77..286- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCCCGTCAGCCGGATCGGTGGCATACCGGAACGCCTGCGGCTTCGTGA
CGTGCGGGATGGGAAAGGTGTGGCCATTGAGCAGGTCGCGAATGTTGCCA
AGGTTGTAGAGGTGTTCAATCTCCACTGGAAAGGAAGAGACGTTCTTCTT
GTAGGATTCGGCGATGATTTTTCCGACGCACTTGCACGTGACTGCTGGCT
GCTCCTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig76894:77..286-

>mRNA_H-paniculata_contig76894.15698.1 ID=mRNA_H-paniculata_contig76894.15698.1|Name=mRNA_H-paniculata_contig76894.15698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig76894:77..286- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCCCGTCAGCCGGATCGGTGGCATACCGGAACGCCTGCGGCTTCGTGA
CGTGCGGGATGGGAAAGCTTCCCGTCAGCCGGATCGGTGGCATACCGGAA
CGCCTGCGGCTTCGTGACGTGCGGGATGGGAAAGGAAGAGACGTTCTTCT
TGTAGGATTCGGCGATGATTTTTCCGACGCACTTGCACGTGACTGCTGGC
TGCTCCTTTAGGAAGAGACGTTCTTCTTGTAGGATTCGGCGATGATTTTT
CCGACGCACTTGCACGTGACTGCTGGCTGCTCCTTTAG
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