mRNA_H-paniculata_contig7688.15696.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7688.15696.1
Unique NamemRNA_H-paniculata_contig7688.15696.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7688.15696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7688contigH-paniculata_contig7688:1435..2000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size193
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.5862913-CDS-H-paniculata_contig7688:1434..15951622930951.5862913-CDS-H-paniculata_contig7688:1434..1595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7688 1435..1595 -
1691481524.8686407-CDS-H-paniculata_contig7688:1434..15951691481524.8686407-CDS-H-paniculata_contig7688:1434..1595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7688 1435..1595 -
1622930951.602239-CDS-H-paniculata_contig7688:1969..20001622930951.602239-CDS-H-paniculata_contig7688:1969..2000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7688 1970..2000 -
1691481524.8870497-CDS-H-paniculata_contig7688:1969..20001691481524.8870497-CDS-H-paniculata_contig7688:1969..2000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7688 1970..2000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7688.15696.1prot_H-paniculata_contig7688.15696.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7688 1435..2000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7688.15696.1

>prot_H-paniculata_contig7688.15696.1 ID=prot_H-paniculata_contig7688.15696.1|Name=mRNA_H-paniculata_contig7688.15696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
TEVDIFTSNRVGCGISHQWAQLYRGGGETCRAEGLDSCRRYHFRVRATNG
VGRWRYERLYVTI*
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mRNA from alignment at H-paniculata_contig7688:1435..2000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7688.15696.1 ID=mRNA_H-paniculata_contig7688.15696.1|Name=mRNA_H-paniculata_contig7688.15696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=566bp|location=Sequence derived from alignment at H-paniculata_contig7688:1435..2000- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGGTGGACATATTCACCTCTAATCGAGGTAATTGCCACTATAGCAA
ATAATACAGCATTGATCGTTGGTTTGAGAACAATTTCCAATTTCCATTTA
TTCCCGTCTTTATTCCCGTGTTTATTTCGAAGTGTCACGTGAGACGGGTA
ACAATTTGAGAACATAAGTTAGGTACGCCACTGGCGTAGTCATGGTCTTT
CTACGAGTAATGTGTAAACGCGCAATGGGCAGAAGATAATATTATATCGC
ATGAGGGGAACGATCCATTTGACCTGAGAGAAAAGAGCAGCTATCGCAGC
TTATCTGGGAATGGGATCTTGCGTCCTCGTCTTGACCACAAGGCTTCATC
TAAAGCACAATCCGATTTTCTGTTCGCCCTGTACCACACTCTCTACGATC
TGAAGTTGGCTGCGGGATATCCCATCAATGGGCTCAGTTGTACCGCGGCG
GCGGTGAGACATGTCGAGCGGAAGGACTGGACTCTTGCCGCCGCTATCAT
TTCCGTGTGCGTGCGACGAACGGCGTTGGGAGATGGAGGTACGAACGGCT
TTATGTTACTATTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig7688:1435..2000-

>mRNA_H-paniculata_contig7688.15696.1 ID=mRNA_H-paniculata_contig7688.15696.1|Name=mRNA_H-paniculata_contig7688.15696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig7688:1435..2000- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGGTGGACATATTCACCTCTAATCGAGACAGAGGTGGACATATTCA
CCTCTAATCGAGTTGGCTGCGGGATATCCCATCAATGGGCTCAGTTGTAC
CGCGGCGGCGGTGAGACATGTCGAGCGGAAGGACTGGACTCTTGCCGCCG
CTATCATTTCCGTGTGCGTGCGACGAACGGCGTTGGGAGATGGAGGTACG
AACGGCTTTATGTTACTATTTAATTGGCTGCGGGATATCCCATCAATGGG
CTCAGTTGTACCGCGGCGGCGGTGAGACATGTCGAGCGGAAGGACTGGAC
TCTTGCCGCCGCTATCATTTCCGTGTGCGTGCGACGAACGGCGTTGGGAG
ATGGAGGTACGAACGGCTTTATGTTACTATTTAA
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