mRNA_H-paniculata_contig7684.15691.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7684.15691.1
Unique NamemRNA_H-paniculata_contig7684.15691.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7684.15691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7684contigH-paniculata_contig7684:68..905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size840
Cds size837
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.1971705-CDS-H-paniculata_contig7684:67..9041622930951.1971705-CDS-H-paniculata_contig7684:67..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7684 68..904 +
1691481524.766896-CDS-H-paniculata_contig7684:67..9041691481524.766896-CDS-H-paniculata_contig7684:67..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7684 68..904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7684.15691.1prot_H-paniculata_contig7684.15691.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7684 68..904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7684.15691.1

>prot_H-paniculata_contig7684.15691.1 ID=prot_H-paniculata_contig7684.15691.1|Name=mRNA_H-paniculata_contig7684.15691.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp
RALGLSGSPTGSPTRPTGPAAAAAAAEKGRLLQRRQREEQQRLNYANILQ
KKKQQQQLQQFPLVRPPIPSRVLPQGGSKVLASARNHDGIRSSAGRSPSP
FRHLTLPQPPYQSQSPHQSIATVAGGEHKRLKKNASVTYMHLGQSGAQPP
GSSSPRSSSKDNSPRMTAKAATSVAPGAVPLRSVGAATGAWPSSSSSPST
SETLGSSSASQAASPSTFPTTTETSAASGHVGTVGARGGGGGAGYGASVA
GSRGPSGDGSNSNNGRRDGIVSGNAGGGG
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mRNA from alignment at H-paniculata_contig7684:68..905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7684.15691.1 ID=mRNA_H-paniculata_contig7684.15691.1|Name=mRNA_H-paniculata_contig7684.15691.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=838bp|location=Sequence derived from alignment at H-paniculata_contig7684:68..905+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCGTTGGGGTTGTCGGGGTCACCGACGGGGTCGCCGACGCGCCCTAC
CGGTCCGGCCGCGGCCGCGGCCGCGGCGGAGAAGGGTAGGCTCTTGCAGC
GGCGCCAGAGAGAGGAGCAGCAACGATTAAACTATGCGAACATACTCCAA
AAGAAGAAGCAGCAGCAGCAACTGCAGCAGTTTCCTCTGGTGCGACCGCC
GATCCCATCTCGTGTACTTCCACAAGGCGGGTCAAAGGTGTTAGCTTCCG
CTAGAAACCACGATGGTATTCGAAGCAGTGCCGGGCGGAGCCCTTCCCCT
TTTCGCCACCTTACACTGCCACAACCGCCTTACCAGAGCCAGAGCCCGCA
CCAATCCATCGCTACCGTCGCCGGCGGGGAACATAAACGGCTCAAGAAGA
ATGCTAGCGTCACGTACATGCATCTTGGCCAGTCGGGGGCGCAGCCCCCA
GGCAGCAGCTCCCCCCGCAGCAGCAGCAAGGACAACAGCCCACGTATGAC
AGCAAAAGCTGCGACATCGGTAGCTCCGGGGGCGGTTCCTCTTCGTAGCG
TCGGTGCCGCCACCGGTGCATGGCCGAGCTCGTCGTCTAGCCCCTCAACA
TCGGAGACATTGGGATCCTCGTCCGCTTCTCAAGCCGCAAGCCCCTCGAC
GTTCCCCACTACCACAGAGACGAGCGCTGCGAGTGGCCACGTCGGAACTG
TAGGCGCTAGGGGTGGAGGAGGCGGCGCTGGGTACGGGGCGAGCGTAGCA
GGTTCACGGGGACCATCGGGCGACGGCTCCAACAGCAACAATGGTCGTCG
GGATGGCATAGTTAGTGGGAACGCGGGCGGTGGCGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig7684:68..905+

>mRNA_H-paniculata_contig7684.15691.1 ID=mRNA_H-paniculata_contig7684.15691.1|Name=mRNA_H-paniculata_contig7684.15691.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at H-paniculata_contig7684:68..905+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCGTTGGGGTTGTCGGGGTCACCGACGGGGTCGCCGACGCGCCCTAC
CGGTCCGGCCGCGGCCGCGGCCGCGGCGGAGAAGGGTAGGCTCTTGCAGC
GGCGCCAGAGAGAGGAGCAGCAACGATTAAACTATGCGAACATACTCCAA
AAGAAGAAGCAGCAGCAGCAACTGCAGCAGTTTCCTCTGGTGCGACCGCC
GATCCCATCTCGTGTACTTCCACAAGGCGGGTCAAAGGTGTTAGCTTCCG
CTAGAAACCACGATGGTATTCGAAGCAGTGCCGGGCGGAGCCCTTCCCCT
TTTCGCCACCTTACACTGCCACAACCGCCTTACCAGAGCCAGAGCCCGCA
CCAATCCATCGCTACCGTCGCCGGCGGGGAACATAAACGGCTCAAGAAGA
ATGCTAGCGTCACGTACATGCATCTTGGCCAGTCGGGGGCGCAGCCCCCA
GGCAGCAGCTCCCCCCGCAGCAGCAGCAAGGACAACAGCCCACGTATGAC
AGCAAAAGCTGCGACATCGGTAGCTCCGGGGGCGGTTCCTCTTCGTAGCG
TCGGTGCCGCCACCGGTGCATGGCCGAGCTCGTCGTCTAGCCCCTCAACA
TCGGAGACATTGGGATCCTCGTCCGCTTCTCAAGCCGCAAGCCCCTCGAC
GTTCCCCACTACCACAGAGACGAGCGCTGCGAGTGGCCACGTCGGAACTG
TAGGCGCTAGGGGTGGAGGAGGCGGCGCTGGGTACGGGGCGAGCGTAGCA
GGTTCACGGGGACCATCGGGCGACGGCTCCAACAGCAACAATGGTCGTCG
GGATGGCATAGTTAGTGGGAACGCGGGCGGTGGCGGTAGGGCGTTGGGGT
TGTCGGGGTCACCGACGGGGTCGCCGACGCGCCCTACCGGTCCGGCCGCG
GCCGCGGCCGCGGCGGAGAAGGGTAGGCTCTTGCAGCGGCGCCAGAGAGA
GGAGCAGCAACGATTAAACTATGCGAACATACTCCAAAAGAAGAAGCAGC
AGCAGCAACTGCAGCAGTTTCCTCTGGTGCGACCGCCGATCCCATCTCGT
GTACTTCCACAAGGCGGGTCAAAGGTGTTAGCTTCCGCTAGAAACCACGA
TGGTATTCGAAGCAGTGCCGGGCGGAGCCCTTCCCCTTTTCGCCACCTTA
CACTGCCACAACCGCCTTACCAGAGCCAGAGCCCGCACCAATCCATCGCT
ACCGTCGCCGGCGGGGAACATAAACGGCTCAAGAAGAATGCTAGCGTCAC
GTACATGCATCTTGGCCAGTCGGGGGCGCAGCCCCCAGGCAGCAGCTCCC
CCCGCAGCAGCAGCAAGGACAACAGCCCACGTATGACAGCAAAAGCTGCG
ACATCGGTAGCTCCGGGGGCGGTTCCTCTTCGTAGCGTCGGTGCCGCCAC
CGGTGCATGGCCGAGCTCGTCGTCTAGCCCCTCAACATCGGAGACATTGG
GATCCTCGTCCGCTTCTCAAGCCGCAAGCCCCTCGACGTTCCCCACTACC
ACAGAGACGAGCGCTGCGAGTGGCCACGTCGGAACTGTAGGCGCTAGGGG
TGGAGGAGGCGGCGCTGGGTACGGGGCGAGCGTAGCAGGTTCACGGGGAC
CATCGGGCGACGGCTCCAACAGCAACAATGGTCGTCGGGATGGCATAGTT
AGTGGGAACGCGGGCGGTGGCGGT
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