mRNA_H-paniculata_contig768.15685.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig768.15685.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI) HSP 1 Score: 276 bits (707), Expect = 2.370e-80 Identity = 181/359 (50.42%), Postives = 216/359 (60.17%), Query Frame = 1
Query: 4 ALKRLRAGISVTVADGSSRGQ------NPTSAAVAAMRADACLQSLRD-ESRVYLVANGGLSVWRRGRN---GRGLRSRVVKKAASTVEEGKRQGNEGSAGTAIT-----------------KLEKIDGVCAGVLFGGGGASSVELSADGRWVVVVDDRGGLSWWTTPSLIRLARWTWPTGT-FCVTDVVILVGTDSGIDNSRANTRRPPPASAGSYVGGGAKGGAGVSGDPRPCVACLSAAGELRVLRLGPMGVEELHRSQDMVGGGMLTVPSTFRHQFLLVSSNPASGRANIHIGKEAVPRHRLQALLSRGDFNRALELARAHGMDETEVHAARFLSLLRDTGTPPT-SGSKSGEEA 993
ALK+LRAGI V+VAD S + +P ++ + ACLQ+LR SRV+LV+ GG+SVW RG GR R A+ VEE + +G G AG KL K+DGV AG LFGGGGA S ELSADGRW++ VDDRGGLSWW + SL+RL RW+WP G F VTD V+L + R P S + G D RPC+AC+S GE+RVLRLG G EELHR G GMLTVPS RHQFLLV+S+PAS A H+ KEAVPRHRLQALL+RGDF+RALELARA+ MDET VHAAR L+LLR G + SG G+ A
Sbjct: 284 ALKKLRAGIRVSVADASGDEEPLPCPSSPEPSSRDKLPRTACLQTLRGGRSRVFLVSRGGVSVWARGPGCSVGRHPRRGGGGIGAAAVEEWEERG--GGAGEDXXXXXXXXXXXXXXXXXAGKLVKVDGVPAGELFGGGGAISAELSADGRWIIAVDDRGGLSWWNSRSLLRLGRWSWPHGAPFHVTDFVVLASNLVAAGDGGGIGRAPVGGSGNNNSHGE---------DRRPCLACVSREGEVRVLRLGAGGAEELHRVPPAAGAGMLTVPSPSRHQFLLVTSDPASRTAGFHLVKEAVPRHRLQALLARGDFDRALELARANCMDETGVHAARLLALLRGAGVAASASGDGKGDAA 631
BLAST of mRNA_H-paniculata_contig768.15685.1 vs. uniprot
Match: A0A6H5KQ38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ38_9PHAE) HSP 1 Score: 248 bits (633), Expect = 1.830e-71 Identity = 171/355 (48.17%), Postives = 210/355 (59.15%), Query Frame = 1
Query: 4 ALKRLRAGISVTVADGSSRGQN-PTSAAVAAMRAD-----ACLQSLRD-ESRVYLVANGGLSVWRRG------RNGRGLRSRVVKKAASTVEE-----GKRQGNEGSAGTA--IT-KLEKIDGVCAGVLFGGGGASSVELSADGRWVVVVDDRGGLSWWTTPSLIRLARWTWPTGT-FCVTDVVILVGT--DSGIDNSRANTRRPPPASAGSYVGGGAKGGAGVSGDPRPCVACLSAAGELRVLRLGPMGVEELHRSQDMVGGGMLTVPSTFRHQFLLVSSNPASGRANIHIGKEAVPRHRLQALLSRGDFNRALELARAHGMDETEVHAARFLSLLRDTG-TPPTSGSKSGEEA 993
ALKRLRAGI V+VAD S + P +++ D ACLQ+LR SRVYLV+ GG+SVW RG R+ R + AA EE G+ +G++G A +A +T KL K+DGV AG LFG GGA S ELSADGRW++VVDDRGGLSWW + SL+RL RW+WP G F VT+ V+L D+G R P +G+ G D RPC+AC+S GE+RVLRLG G EELHR G GMLTVPS RHQFLLV+ G + +H ALL+ GDF+RALELARA+ MDET+VHAAR L+LLR G SG G+ A
Sbjct: 170 ALKRLRAGIRVSVADASGDEEPFPCPSSLEPSSRDKLPRTACLQTLRGGRSRVYLVSRGGVSVWARGPGRSVSRHSRRCGGEIGAAAAKEGEERGGGAGEERGSDGDAPSAPGVTGKLVKVDGVPAGELFGEGGAISAELSADGRWIIVVDDRGGLSWWNSRSLLRLGRWSWPHGAPFHVTNFVVLASNLVDAG---DGGGIGRAPVGGSGNNNSHGE--------DRRPCLACISREGEVRVLRLGAGGAEELHRMPPAAGAGMLTVPSPSRHQFLLVTRCVCGGYSAVHA-----------ALLAHGDFDRALELARANSMDETDVHAARLLALLRGAGGAASASGDGKGDAA 502
BLAST of mRNA_H-paniculata_contig768.15685.1 vs. uniprot
Match: A0A835ZDW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW9_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.660e-18 Identity = 97/319 (30.41%), Postives = 131/319 (41.07%), Query Frame = 1
Query: 7 LKRLRAGISVTVADGSSRGQNPTSAAVAAMRADACLQSLRDESRVYLVANGGLSVWRRGRNG-RGLRSRVVKKAASTVEEGKRQGNEGSAGTAITKLEKIDGVCAGVLFGGGGASSVELSADGRWVVVVDDRGGLSWWTTPSLIRLARWTWPTGTFCVTDVVILVGTDSGIDNSRANTRRPPPASAGSYVGGGAKGGAGVSGDPRPCVACLSAAGELRVLRLGPMGVEELHRSQDMVGGGMLTVPSTFRHQFLLVSSNPASGRA------NIHIGKEAVPRHRLQALLSRGDFNRALELARAHGMDETEVHAARFLSLL 942
L+RLRAG+ V V S +P A + S + + V +GG+SVW R+ +G+R + A+T G LFGGG S + L A G+W +V D GGL+WW +L++L R+ W D P P GGGA P PCVA + A G L VL+L G LH S + PS ++ +EA+P HR++ALLSRG + AL LARAHGMDETE+H A+ +LL
Sbjct: 218 LRRLRAGLRVNVTT-LSTVTDPAQQQQQPPSAISLALSWQPAQTLIYVVSGGISVWSCPRSSAQGIR--LADSHAATAL--------GXXXXXXXXXXXXXXXXXXXLFGGGAPSRLALCAGGQWAIVTDTAGGLAWWDARALLQLRRYAWR-------------------DRGAVVDCAPLPH------GGGA---------PGPCVAAVFARGALCVLQLLLGGCAVLH-SVSAPAATRVVAPSPHXXXXXXXXXXXXXXXXXXXXTLSVARAREALPLHRMRALLSRGLLDAALALARAHGMDETELHVAQLAALL 490 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig768.15685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig768.15685.1 >prot_H-paniculata_contig768.15685.1 ID=prot_H-paniculata_contig768.15685.1|Name=mRNA_H-paniculata_contig768.15685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=332bp KALKRLRAGISVTVADGSSRGQNPTSAAVAAMRADACLQSLRDESRVYLVback to top mRNA from alignment at H-paniculata_contig768:18885..21787+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig768.15685.1 ID=mRNA_H-paniculata_contig768.15685.1|Name=mRNA_H-paniculata_contig768.15685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2903bp|location=Sequence derived from alignment at H-paniculata_contig768:18885..21787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig768:18885..21787+ >mRNA_H-paniculata_contig768.15685.1 ID=mRNA_H-paniculata_contig768.15685.1|Name=mRNA_H-paniculata_contig768.15685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at H-paniculata_contig768:18885..21787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |