mRNA_H-paniculata_contig76785.15678.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76785.15678.1
Unique NamemRNA_H-paniculata_contig76785.15678.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Match: A0A6H5L5V8_9PHAE (MsrB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5V8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 5.470e-53
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 1
Query:    1 VLRNKATEPAGVRKASGGFDDVFDKGTYICAGCRTPLYEDTHKFDCGCGWPGFWTNIKDAVYEQKDADGRRAEILCSSCDG 243
            VLR KATEPAGVRKASGGFDDVFDKGTY+CAGCRTPLYED+HKFDCGCGWPGFWTNI+DAVYE+KDADGRR EILCS C G
Sbjct:   92 VLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGG 172          
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Match: A0A836C9K1_9STRA (Mss4-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K1_9STRA)

HSP 1 Score: 139 bits (351), Expect = 7.350e-40
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 VLRNKATEPAGVRKASGGFDDVFDKGTYICAGCRTPLYEDTHKFDCGCGWPGFWTNIKDAVYEQKDADGRRAEILCSSCDG 243
            VLR KATEP  V  A GGFDD  + GTY+C  C TPLY+ +HKFDCGCGWPGFWTNIKDAVYE++D DG RAEILCSSC G
Sbjct:   91 VLRQKATEPRSVTVARGGFDDHTEDGTYVCGCCGTPLYDSSHKFDCGCGWPGFWTNIKDAVYEERDKDGFRAEILCSSCGG 171          
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Match: W7U3G1_9STRA (Peptide methionine sulfoxide reductase b5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.160e-39
Identity = 60/81 (74.07%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 VLRNKATEPAGVRKASGGFDDVFDKGTYICAGCRTPLYEDTHKFDCGCGWPGFWTNIKDAVYEQKDADGRRAEILCSSCDG 243
            VLR KATEP  V  A GG+DD   KGTY+C GC+TPLY    KFDCGCGWPGFWTNIKDAVYEQ+DADG R EILCS CDG
Sbjct:  124 VLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDG 204          
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Match: A0A7S2V6B3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6B3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.090e-38
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    1 VLRNKATEPAGVRKASGGFDDVFDKGTYICAGCRTPLYEDTHKFDCGCGWPGFWTNIKDAVYEQKDADGRRAEILCSSC 237
            VLR K TEPAG   A+GGFDD  +KGTYICAGC TPLY   HKFDCGCGWPGFWTNIK AVYE+ D DG R EI+CS+C
Sbjct:   98 VLRMKGTEPAGQTVANGGFDDHTEKGTYICAGCSTPLYTSEHKFDCGCGWPGFWTNIKGAVYEKLDKDGFRCEIMCSAC 176          
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Match: A0A812INW2_SYMPI (MSRB5 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812INW2_SYMPI)

HSP 1 Score: 125 bits (314), Expect = 8.870e-35
Identity = 56/86 (65.12%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 VLRNKATEPAGVRKASGGFDDVFDKGTYICAGC-----RTPLYEDTHKFDCGCGWPGFWTNIKDAVYEQKDADGRRAEILCSSCDG 243
            VLR KATEP    K   GFDD  D G YICAGC     + PLY  + KFDCGCGWPGFWTN++ AVYEQ+DADGRR EILCS C+G
Sbjct:   47 VLRKKATEPGHRIKFPQGFDDHNDSGIYICAGCFAAGQQVPLYTSSMKFDCGCGWPGFWTNVQGAVYEQRDADGRRCEILCSKCEG 132          
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Match: A0A1Q9DSR3_SYMMI (Peptide methionine sulfoxide reductase B5 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DSR3_SYMMI)

HSP 1 Score: 127 bits (320), Expect = 2.260e-33
Identity = 56/86 (65.12%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 VLRNKATEPAGVRKASGGFDDVFDKGTYICAGC-----RTPLYEDTHKFDCGCGWPGFWTNIKDAVYEQKDADGRRAEILCSSCDG 243
            VLRNKATEP        GFDD  D G Y+C+GC     + PLY  + KFDCGCGWPGFWTN+KD VYEQ+DADGRR EILCS CDG
Sbjct:   48 VLRNKATEPGHRITFPQGFDDHKDSGVYLCSGCYFAGLQVPLYTSSMKFDCGCGWPGFWTNVKDEVYEQRDADGRRCEILCSKCDG 133          
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Match: A0A7J6MIT1_PERCH (Peptide methionine sulfoxide reductase B3 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MIT1_PERCH)

HSP 1 Score: 121 bits (304), Expect = 2.320e-33
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 VLRNKATEPAGVRKASGGFDDVFDKGTYICAGCRTPLYEDTHKFDCGCGWPGFWTNIKDAVYEQKDADGR-RAEILCSSC 237
            VLR  ATEP G+  A GG+DD F  GTY+C  C TPLY+ +HKFDCGCGWPG+WTNI DAV E+ + DG  R EILCS C
Sbjct:   40 VLREAATEPRGITMAKGGWDDNFADGTYLCGACDTPLYDSSHKFDCGCGWPGYWTNIDDAVAERMETDGSGRIEILCSKC 119          
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Match: A0A813KAL6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KAL6_POLGL)

HSP 1 Score: 122 bits (305), Expect = 4.040e-33
Identity = 54/86 (62.79%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 VLRNKATEPAGVRKASGGFDDVFDKGTYICAGC-----RTPLYEDTHKFDCGCGWPGFWTNIKDAVYEQKDADGRRAEILCSSCDG 243
            VLR KATEP        GFDD   +G Y CAGC       PLY    KFDCGCGWPGFWTN+KDAVYE++DADGRR E+LCS CDG
Sbjct:   72 VLRQKATEPGHKLTFPKGFDDHKAEGVYACAGCLAAGFEVPLYTSRMKFDCGCGWPGFWTNVKDAVYEKRDADGRRCEVLCSRCDG 157          
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Match: A0A7S1F6B5_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F6B5_NOCSC)

HSP 1 Score: 119 bits (299), Expect = 3.090e-32
Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 VLRNKATEPAGVRKASGGFDDVFDKGTYICAGC-----RTPLYEDTHKFDCGCGWPGFWTNIKDAVYEQKDADGRRAEILCSSCDG 243
            VLR K TEP    +A  GFDDVF+ G Y+C  C     +TP+Y    KFDCGCGWPGFWTN++  VYE +DADG R EILCS CDG
Sbjct:   67 VLRLKCTEPGRATQAPLGFDDVFEPGVYLCGSCLAAGVQTPVYTSKMKFDCGCGWPGFWTNVEGNVYESRDADGHRCEILCSHCDG 152          
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Match: A0A7J6P5M7_PEROL (Peptide methionine sulfoxide reductase B3 n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P5M7_PEROL)

HSP 1 Score: 118 bits (295), Expect = 6.690e-32
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 VLRNKATEPAGVRKASGGFDDVFDKGTYICAGCRTPLYEDTHKFDCGCGWPGFWTNIKDAVYEQKDADGR-RAEILCSSC 237
            VLR  ATEP GV  A GG+DD +  GTY+C  C TPLY+ +HKFDCGCGWPG+WTNI  AV E+ + DG  R EILC+ C
Sbjct:   50 VLRQAATEPRGVTLAKGGWDDNYADGTYLCGACETPLYDSSHKFDCGCGWPGYWTNIDGAVAERSETDGSGRTEILCAKC 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76785.15678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5V8_9PHAE5.470e-5390.12MsrB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836C9K1_9STRA7.350e-4072.84Mss4-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
W7U3G1_9STRA1.160e-3974.07Peptide methionine sulfoxide reductase b5 n=2 Tax=... [more]
A0A7S2V6B3_9STRA2.090e-3873.42Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A812INW2_SYMPI8.870e-3565.12MSRB5 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A1Q9DSR3_SYMMI2.260e-3365.12Peptide methionine sulfoxide reductase B5 n=1 Tax=... [more]
A0A7J6MIT1_PERCH2.320e-3363.75Peptide methionine sulfoxide reductase B3 n=1 Tax=... [more]
A0A813KAL6_POLGL4.040e-3362.79Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S1F6B5_NOCSC3.090e-3259.30Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7J6P5M7_PEROL6.690e-3261.25Peptide methionine sulfoxide reductase B3 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76785contigH-paniculata_contig76785:100..578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.5
Seed ortholog evalue2.1e-41
Seed eggNOG ortholog2880.D7G3N8
KEGG koko:K07305
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
EggNOG OGsCOG0229@1,KOG0856@2759
Ec32 ortholog descriptionPeptide methionine sulphoxide reductase MrsB
Ec32 orthologEc-00_006660.1
EC1.8.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.646512-CDS-H-paniculata_contig76785:99..1931622930949.646512-CDS-H-paniculata_contig76785:99..193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76785 100..193 +
1691481524.145491-CDS-H-paniculata_contig76785:99..1931691481524.145491-CDS-H-paniculata_contig76785:99..193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76785 100..193 +
1622930949.6581845-CDS-H-paniculata_contig76785:426..5781622930949.6581845-CDS-H-paniculata_contig76785:426..578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76785 427..578 +
1691481524.1587858-CDS-H-paniculata_contig76785:426..5781691481524.1587858-CDS-H-paniculata_contig76785:426..578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76785 427..578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76785.15678.1prot_H-paniculata_contig76785.15678.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76785 100..578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76785.15678.1

>prot_H-paniculata_contig76785.15678.1 ID=prot_H-paniculata_contig76785.15678.1|Name=mRNA_H-paniculata_contig76785.15678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
VLRNKATEPAGVRKASGGFDDVFDKGTYICAGCRTPLYEDTHKFDCGCGW
PGFWTNIKDAVYEQKDADGRRAEILCSSCDG*
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mRNA from alignment at H-paniculata_contig76785:100..578+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76785.15678.1 ID=mRNA_H-paniculata_contig76785.15678.1|Name=mRNA_H-paniculata_contig76785.15678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=479bp|location=Sequence derived from alignment at H-paniculata_contig76785:100..578+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTTCGCAACAAGGCTACAGAGCCGGCGGGCGTGCGTAAGGCTAGCGG CGGATTCGACGACGTGTTCGACAAGGGAACATACATCTGTGCAGGTAGGC TTCTGTTTCTTTCATACTTCAGTCTAGTTTCTTGGACTCACCGTCAAAGA ACAGAACTTCCTAGGCGCAAAAACCTTGACTTCTGACCAAGGCAAGAAAG ATGTATTCGTTTCTTTTTTTTATCGTGTATTTTGTCTCATTTGTTTTTGT CATAGAACAAACTGGCCCTGAGACGGGCAACATGTCTTTATATCGCCCCG CTCTGCTTGACGAATAAATACTCACAGGATGCCGAACCCCCCTGTACGAA GACACCCATAAATTCGACTGCGGGTGTGGGTGGCCGGGATTCTGGACCAA CATTAAGGACGCGGTGTACGAGCAAAAGGACGCCGACGGCAGGCGTGCAG AGATCCTCTGTTCTTCCTGTGACGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig76785:100..578+

>mRNA_H-paniculata_contig76785.15678.1 ID=mRNA_H-paniculata_contig76785.15678.1|Name=mRNA_H-paniculata_contig76785.15678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig76785:100..578+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTTCGCAACAAGGCTACAGAGCCGGCGGGCGTGCGTAAGGCTAGCGG
CGGATTCGACGACGTGTTCGACAAGGGAACATACATCTGTGCAGGTTCTT
CGCAACAAGGCTACAGAGCCGGCGGGCGTGCGTAAGGCTAGCGGCGGATT
CGACGACGTGTTCGACAAGGGAACATACATCTGTGCAGGATGCCGAACCC
CCCTGTACGAAGACACCCATAAATTCGACTGCGGGTGTGGGTGGCCGGGA
TTCTGGACCAACATTAAGGACGCGGTGTACGAGCAAAAGGACGCCGACGG
CAGGCGTGCAGAGATCCTCTGTTCTTCCTGTGACGGGTGAGATGCCGAAC
CCCCCTGTACGAAGACACCCATAAATTCGACTGCGGGTGTGGGTGGCCGG
GATTCTGGACCAACATTAAGGACGCGGTGTACGAGCAAAAGGACGCCGAC
GGCAGGCGTGCAGAGATCCTCTGTTCTTCCTGTGACGGGTGA
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