mRNA_H-paniculata_contig7672.15672.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7672.15672.1
Unique NamemRNA_H-paniculata_contig7672.15672.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7672.15672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7672contigH-paniculata_contig7672:4666..10847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size988
Cds size744
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7672.15672.1prot_H-paniculata_contig7672.15672.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7672 4908..10847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.6548393-UTR-H-paniculata_contig7672:4665..49071622930948.6548393-UTR-H-paniculata_contig7672:4665..4907Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7672 4666..4907 +
1691481523.7222831-UTR-H-paniculata_contig7672:4665..49071691481523.7222831-UTR-H-paniculata_contig7672:4665..4907Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7672 4666..4907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.6732342-CDS-H-paniculata_contig7672:4907..50301622930948.6732342-CDS-H-paniculata_contig7672:4907..5030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7672 4908..5030 +
1691481523.7336392-CDS-H-paniculata_contig7672:4907..50301691481523.7336392-CDS-H-paniculata_contig7672:4907..5030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7672 4908..5030 +
1622930948.6882422-CDS-H-paniculata_contig7672:9352..95331622930948.6882422-CDS-H-paniculata_contig7672:9352..9533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7672 9353..9533 +
1691481523.7452662-CDS-H-paniculata_contig7672:9352..95331691481523.7452662-CDS-H-paniculata_contig7672:9352..9533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7672 9353..9533 +
1622930948.7026482-CDS-H-paniculata_contig7672:10407..108471622930948.7026482-CDS-H-paniculata_contig7672:10407..10847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7672 10408..10847 +
1691481523.7538583-CDS-H-paniculata_contig7672:10407..108471691481523.7538583-CDS-H-paniculata_contig7672:10407..10847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7672 10408..10847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7672.15672.1

>prot_H-paniculata_contig7672.15672.1 ID=prot_H-paniculata_contig7672.15672.1|Name=mRNA_H-paniculata_contig7672.15672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MPEAGAPKAFMAVTGGESSVGMGGMDDTPIDWSCHSASYAERWKHHHHHH
QQQQQQQQQQQQQPKDQPVWKQERDSLIVKRKKNQPASSAERPAIHEDAS
PEAGTRRPPPPSGLGTIGADKLAAIRASKRHRAGATATSPPWQSNGTVPE
GTELTGNNVENASRNGSRVFPSAEGVCMATGEDTTQFHGAMNKRNCVTHV
TNVLEDSRVDLRANRKAEGGGVTGLGLEFSGTSVDGGGQSAIAMDVVG
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mRNA from alignment at H-paniculata_contig7672:4666..10847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7672.15672.1 ID=mRNA_H-paniculata_contig7672.15672.1|Name=mRNA_H-paniculata_contig7672.15672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6182bp|location=Sequence derived from alignment at H-paniculata_contig7672:4666..10847+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTTTAGGTCCAGTGGCCCAGCTTGAAAACCGGGAGACAGTAACAAGA
AACAACCAAGAAGGTGTCGCGCAAAGAGAGAGACTGGATTTTGCTGTTTC
AAAGAGTTCCCCTTTGTGTCGAAAATCAATTGCCCGCCTGACCTGCGGGA
ATCTGTTTCCACCCTGAAGTGCGGTGCAACCTGAAAGAAAAGGGGTATCG
GTTGATCGATCACGTCACACGTGCCTAAAATAGCGCATTGCAATGCCTGA
AGCAGGAGCCCCAAAGGCGTTTATGGCTGTCACCGGAGGAGAATCGAGTG
TCGGCATGGGTGGGATGGATGACACGCCGATCGATTGGAGCTGCCACTCT
GCTTCTTACGCTGAGGTGGGTTGGTTTGTGGTGTTCAACTTTGCTTCATT
AGTAAGTCAAGAGGGTGTCAAGAGCAACCATAGCTTCATCATCGGCAGCA
TTGTGTAGTCAGTACAGTAGAGTGAATACTACAGTCAGTTCGTTAAGTTC
TCCATATTCACGAGTTTTGACGCTTCTGGGTGCGACCGAATCTTGGTTTG
GGATCTTTGTACAGAGAACCTTACAGTGTACAGTGTAGTACATATCACAT
GGTCAAACCAAAAAGCGTTTACTCATCAAATCAACCCAAGCATGCGATCG
AGTGCAACAGACCGAAATCGCCATCAAAGGGAGCGCTGTTGTACTAACTA
TTGAAGAAGGATCAACGCACCCATTACTACTTCCACATGTTACCCCGCAC
CGAAAGCTATTCGATCCCTGTACCTGTTTAGTGCAGGTTTGATGTACATG
CGATAACTGGGTCATCTTCCCAGAATTTTGAGACTCGGATATGGCTTTTA
GTTTGGAGACAGCACTCTATTTAGAGCCCTCGAAACGCAACATGACTTAC
TTTCTGGAAGCCTGGAAAGCATATCATCATTTATCAACGTGAGAAGTGGC
TTTCAACTTTCAACTGTATCCGCGTTTTTCAGTCACGCTCTTGGCTCGAG
GTTTGCTTGCATAAAACAGCCAGTGCACAACCTTTTCAATCGACAAGTGC
TCTGCTTCTATGTGCTCATCAAACTGTATGTTGGTATATCGTGCCGTAGA
ATACGCCCTCTGATTGGGTCGAGTAACGAAAAGACGAACACACACGCATG
AGACCTTTTTGCATAATCTTCGAACGCCAAATTTTTCCAGAAGAGATTTT
TGTGCAGGCATGAGACCTTTGAACGTAGGAAGTCACCTTGAGGCAGCCTT
TTTTAAGGGACCAAACACAAGGCTGCCTAGCAGTCTGCAGGAGGTGCGCC
AAAGCAAAATAATCTTTTCTGTTATGTACGAGCCAGTAATCGTCGTCGTC
GACACAGGAAAATTGATGACCGATTCGGGGCAAAATGCCTCAGTCCTTCG
CAAATAGATATGAGCCCCCAGAATGTTAGTGGAACTTTGTAACAGTTGAT
AGATCGCAAATGTGAAATCTCAGATAACCCCTTGATCCCTGGAAGAAAAA
AAAGAGTGGACAGAAGGAGCAACATTTTTGTCAGGGAGTGTAACGCCCGG
ATTACTAAGTAGCTATCACTTAAACGCCAGTTGTCATGTTCCGATTGCGA
CGACTGCCAGCCGCTGTGTTTGTCGATACTGTCAGGCATTACAGGACACC
ATACTATACGCAGTGGCTTTTGCTCGCTACGAATCTCTCCGAGTATACTA
GTGCCTCCCAGCTACTCTCCATCTTCATTGTGTTGCTGTTTCCCCAGTAT
CAGCAGGCAGCTAGATGTGGTGCTGCACCAAGACACCAGCTGTGACATGC
ATCCTACCTTACTGTCTGTTTCTTCCGTTACCGTGCGCAGCTCTCTCTGA
CTTTATGATGCTGTTTGTGCTGTCCAGCTGGCTGCACTCGATAGAACCCT
TTGTATATATACTGTATCTTATCAGCTGTACTTCTACCTCCACATCAACT
GTCAAGCACATGGCGTTGCAACTGCAGCAAACCAGCCGTGGACGTGCAAT
GGTTGAAATGAAAAACGGTCACCTTTTGAGTCTTTTCGCTCCTAGCGCTA
TTTATCCATCTCGTGGGTATGTTTTTCATGTTGTACGCCACCGTTCTGTT
TATCTTTATAGTGCATCGTTATGATGTCATCACCGCCGAAACAACTTTTC
GTCCGTCCCAAATCGGTGTCCCCCTTCCCTCAAAATGTACCCCCCCATTT
GGGAACACAGAACTGTGAGATTTCGCACGCCACAAAATGTCGCATTATGG
TCCCCGAGAAATCAAGGGGGTTAAGGGCAGTTCAAACAAGCGAGCCTGAT
TTTCTGCTTTCCGATATTCTGTTTGAGATTTTGTGTACCGCAACCATCAC
ATTCGGAATTATATTTTTCCGATTGAAATGGTTGCGGTGTGTAAACCCAA
ATAAAATTCGGAAAACAGAAAAAGCAGATTCACTCGTTTAGAACGACCTT
GAGTGCAAGTTGAACGCTTGAACATGTTTGCTAGTAAATGCTGGTCTTCC
TATGGTGTATATCTCCTGCAAGCCACTGCCCGTACTTGCGGCCCGTTGAG
GTCGGCTTAAGCATATATGTGTTCTATTGTGTTTTACGTATCTTCTTGTA
TCTGATCGTATTGCCATGCTCCAATGGTGACGGTTACCAGTGAAACAACC
GGCACAGGAATAGTTGTCCGGGATTCTGTATACTTGCTGTAACATATGAT
TTTGCACAATCATCTGTTGTACAGTTAGTACGGTCAGTCTGTACTGTCGT
TGGAGTCGTTCCTGGTAGGTAAAAAGTGTCTTGCTTCTAGCGGCCCACAC
ATCGGTGGCAACGTTACCATGTCCACCCCCCCCCCCCACCCCCCCCCCCA
CCCCCCCTCTCCATAGCAAACCACGACTCTGTCTCTCGTAAGAACTCACC
TGACACCAGAAAGCAAAACAAGAAAATACTAGTGCATGTGGTTGCTATTA
AGTAGAACTTGAAAAAAAAACGCTGCAAGAGTTCACGTCTCGCTCGTGCA
GCGTCGCAAGCTTATTCAAATTCTTTGACACTTGGCGCGTGTTTTACTCG
TTCTGGGTCGTTTTCACCTATTGTGTTGTAAAGCGTAGACTTACTGCGGC
TTGTTGGGCCATGTTGGGTCCTTGTTGACCCAACACTTTTGTTTCCGCAA
ACACTTTGCGTAAGTTTATTTCTCTTACGATGAAAGATGCCGCTGTTCCG
CTCTGTTCTAGTGACGAGTCTTGGTGGCCACGTTGTGCGCCTATTTAGTC
CACTGGCCACATTTTTAGTCTGCTTCGAACTGCTGCCTTCTCGACGTTAG
TTTTTACACAAGAATTTTCGTCGACCTTTTCGGAACGAACCGCGCCGTAC
AGCAGGTGCCATGCGAGATACAAACAACTGGGGTCAGCCGGTACCACATC
CAATTTGATGGCGTCATATTGTAGGCGTTTACGCCAAACAAATTCCTTTC
GCAAATTTCGGTTTTTGGTCGTATATGGTCAACAGTGGGTTGCTCGTCGC
AAAACCCCACGTCACCCACACCAACGTCTCGTTGCGACAGGAAATTCCTT
TGTCAAGAATCGTATATTCTATGAGAGATACGAGCAGTCACTAGTTGTGA
CGCGGAGTTCGCTTTGTAACGAGATGTTGGTATAGGTGCACTGGGGTCTG
GGACGAGGTGCTCGCTGTTTATTGGCTATACGCACCACCAAACCGGAATT
TGTAAAAGGCATTTTTTTCTTCGCAAATAGTTTACGTTGTTCTGATTGCT
GCTGCCGTAGTTCCAGAATTCTGCACCAAAATGCGCTTGAATTTCAAGCG
ACAAATGTAGCAGGCAGCTGCCTCCCCTTACGTATCGCCATCTTTGCAAC
CAGAAGTTTAGTCCGTGTCGTTGCGACCGATGCAATCCACTGCAATGCTT
GTGTCCTACATCGGGGCGCATGAGAATTCGAACAGTACGCTAGTATGTTT
TTGCAACAAGCTCCATGTACGGAATGGGCCATTACGTTGTATGGACGGTT
CGGTGATGGCATAAGAGACTAGAAACACGTTTTATAAAGTACTGTGGTGC
ACTGTTTTTTTTTTTAGGCATAATATTTGAGTCGATTTGAGTGTTGTATT
GGGGGGTGAGGGCGGGGAAAGGCTACTCCTGTTTTGTATATCGTAATTAG
TAGACCGTTGTCTACGAATCCTCTCGAGGATTGATGGGTTGTTTTCTGTT
GAGAGAAGGGGGATGGACAGAACCATTACAAGTCGATTTGGTTCCTGCCC
TACCATTACACTCAGAGAGAAAAAACGCGACCTGTAGCGAGAGCGATATC
GCCCATGAATCTGGAGAGTCTTGCCATTAATTTCAGTCTTTCTTTTCTCA
CACTGAATCCGATCTGCTGGATTATGTCTCTTGGTACATGGATGCCCTGT
GGTGTGGGCCGAGTCGTTGACCATTTGAGCGCTCTCTGAAGTGGTGATTT
TCTAAATATAAAATGGTTGACAGCTGTCTTTACAGATGCCATTCATTCAA
AAATTCCGAAACAAGAGTGTTGAATGTTGACAAGAATATAATATAACCAC
TCAGGCGATAGGAAAAAAGGGTGGTTCAAACGGTAGTGGTGCAAGTATCA
AACTTGGCCCCCATCAGAACGGTTTTAGTCCTGCTTGTATAAAAGGTGTC
AACTATCCCCCGTCCAAACCCCGTTTCTACGCAGCAGCGGTGGAAACATC
ATCATCATCATCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAA
CAACCAAAAGATCAACCCGTTTGGAAACAAGAGCGTGACAGTCTTATAGT
GAAGAGGAAGAAAAACCAGCCTGCTAGTTCTGCGGAGAGACCTGCCATCC
ACGAAGATGCGTCCCCAGGTACTTGGCCAATACCTCAAGCAGATACGTTC
CTTGTCAGTTATTTGTTTCACTCGTTCGTTCGATATATGAAGCTCAACTT
GTCGTCCTGTATACTCTTTAGTCGTTTGATTTTTTTTTTTTTTTTAACCC
CCGGAAGGCTAATTTAGTCGTTTGATATGATGGTATTTACCAAGGCACAC
TGTTAATAGGACCAAATTGTCGTCTTTTCACCCGATGTGTCCCCGTTCAA
CGCGGCGTATCTCCCCAAGCACGGGGTCAAGTCGAAAGCCGAAACGTGGG
TGTAAACCGCATGATTTAAACGTTTGCACATATTCCGGTTCCGTATGTTA
ATCCGGTCGAACGGGTTCGGACTTTCGGAAATTCCGGTGGAGCAGTGGTT
TGGTCCTGATAACAATGTGCCTCTGTAGATGTGATTAGATGTGTACACAC
GTGGGCGGCCATGGATTCATGTGTGTTGAAGTCTTCGAGTCCTCTCGTGA
ACCATAGGATACAATCGATCGAAATAGTAGAAAGTGATGATGAGCAAAAC
AAGTTAATTGCCCGATATTCTCCCGAAAGCGGCGTCAGTTAAGCCAAGGA
AATTATATCTTATCCTACTGGAAATAGGACATAGGTATAGGATTATGCTA
AACTAACGCCTTTCAAAGTGTCGGAGAGTATAGACCTCGCATCCATGTGA
GTCTACAATGCCCGCATAAAGTGATACGTCTGATTTCGCTGACCCGGGCT
ATGGTCCACAAGGGTGATTGATCACCAGCTGATGTTACAATAGTCATAAT
CCAATCCACAAGTCGACCGCTCGTACATCGTTGTGTACACAGCACACGCT
GACGTAGCTTTCCGGCCCGCTCTTTGATCGAATAAAAAGCAGAAGCAGGG
ACTCGTAGGCCCCCGCCGCCATCAGGCCTGGGAACTATAGGCGCGGACAA
ACTGGCAGCGATTCGGGCATCCAAGCGACATCGCGCTGGTGCCACCGCCA
CCTCTCCTCCTTGGCAATCAAATGGCACTGTACCTGAAGGAACTGAGTTG
ACGGGGAACAATGTGGAGAACGCCTCGCGGAACGGTTCGCGGGTTTTTCC
GAGCGCCGAGGGTGTATGCATGGCTACCGGCGAGGACACGACGCAGTTTC
ACGGAGCGATGAATAAACGGAACTGCGTGACACATGTTACTAACGTTCTT
GAAGATAGCAGGGTGGATTTACGTGCGAATCGTAAAGCGGAAGGCGGTGG
CGTCACGGGGTTAGGGTTAGAGTTTAGTGGTACGAGTGTGGACGGCGGAG
GGCAATCTGCGATTGCAATGGATGTTGTCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig7672:4666..10847+

>mRNA_H-paniculata_contig7672.15672.1 ID=mRNA_H-paniculata_contig7672.15672.1|Name=mRNA_H-paniculata_contig7672.15672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig7672:4666..10847+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGAAGCAGGAGCCCCAAAGGCGTTTATGGCTGTCACCGGAGGAGA
ATCGAGTGTCGGCATGGGTGGGATGGATGACACGCCGATCGATTGGAGCT
GCCACTCTGCTTCTTACGCTGAGATGCCTGAAGCAGGAGCCCCAAAGGCG
TTTATGGCTGTCACCGGAGGAGAATCGAGTGTCGGCATGGGTGGGATGGA
TGACACGCCGATCGATTGGAGCTGCCACTCTGCTTCTTACGCTGAGCGGT
GGAAACATCATCATCATCATCACCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACAACAACAACCAAAAGATCAACCCGTTTGGAAACAAGAGCGTGACAG
TCTTATAGTGAAGAGGAAGAAAAACCAGCCTGCTAGTTCTGCGGAGAGAC
CTGCCATCCACGAAGATGCGTCCCCAGCGGTGGAAACATCATCATCATCA
TCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACCAAAAG
ATCAACCCGTTTGGAAACAAGAGCGTGACAGTCTTATAGTGAAGAGGAAG
AAAAACCAGCCTGCTAGTTCTGCGGAGAGACCTGCCATCCACGAAGATGC
GTCCCCAGAAGCAGGGACTCGTAGGCCCCCGCCGCCATCAGGCCTGGGAA
CTATAGGCGCGGACAAACTGGCAGCGATTCGGGCATCCAAGCGACATCGC
GCTGGTGCCACCGCCACCTCTCCTCCTTGGCAATCAAATGGCACTGTACC
TGAAGGAACTGAGTTGACGGGGAACAATGTGGAGAACGCCTCGCGGAACG
GTTCGCGGGTTTTTCCGAGCGCCGAGGGTGTATGCATGGCTACCGGCGAG
GACACGACGCAGTTTCACGGAGCGATGAATAAACGGAACTGCGTGACACA
TGTTACTAACGTTCTTGAAGATAGCAGGGTGGATTTACGTGCGAATCGTA
AAGCGGAAGGCGGTGGCGTCACGGGGTTAGGGTTAGAGTTTAGTGGTACG
AGTGTGGACGGCGGAGGGCAATCTGCGATTGCAATGGATGTTGTCGGGAA
GCAGGGACTCGTAGGCCCCCGCCGCCATCAGGCCTGGGAACTATAGGCGC
GGACAAACTGGCAGCGATTCGGGCATCCAAGCGACATCGCGCTGGTGCCA
CCGCCACCTCTCCTCCTTGGCAATCAAATGGCACTGTACCTGAAGGAACT
GAGTTGACGGGGAACAATGTGGAGAACGCCTCGCGGAACGGTTCGCGGGT
TTTTCCGAGCGCCGAGGGTGTATGCATGGCTACCGGCGAGGACACGACGC
AGTTTCACGGAGCGATGAATAAACGGAACTGCGTGACACATGTTACTAAC
GTTCTTGAAGATAGCAGGGTGGATTTACGTGCGAATCGTAAAGCGGAAGG
CGGTGGCGTCACGGGGTTAGGGTTAGAGTTTAGTGGTACGAGTGTGGACG
GCGGAGGGCAATCTGCGATTGCAATGGATGTTGTCGGG
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