mRNA_H-paniculata_contig76696.15668.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76696.15668.1
Unique NamemRNA_H-paniculata_contig76696.15668.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Match: D7FL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL55_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.590e-18
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVYR 150
            SF F+SASSAQNMVLF++FVTGLALMVTSFVLNLVEST+DINA LKW+YR
Sbjct: 1641 SFFFKSASSAQNMVLFINFVTGLALMVTSFVLNLVESTRDINASLKWIYR 1690
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BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Match: A0A7R9U9S9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9S9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.570e-11
Identity = 33/50 (66.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVYR 150
            S+ F+S SSAQN+VLF +F+TGL LM+TSFVLNL+EST+ IN  LK+V+R
Sbjct:  433 SYAFKSHSSAQNVVLFFNFITGLCLMITSFVLNLLESTQAINYYLKYVFR 482
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BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Match: A0A812GER7_9DINO (ABCA1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812GER7_9DINO)

HSP 1 Score: 63.5 bits (153), Expect = 1.780e-10
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVYR 150
            SF+F   +SAQ + L V+F+TGL LM+TS++LNL+ESTKD+NA L W+YR
Sbjct:   37 SFLFSKHTSAQILSLVVNFLTGLLLMLTSYILNLIESTKDVNASLMWIYR 86
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BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Match: A0A835ZC34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC34_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.350e-10
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVY 147
            SF F+S SSAQN+VL ++F+TGLALMVTSFVL+L++ST+  N +L+W Y
Sbjct: 1636 SFAFDSHSSAQNVVLLLNFLTGLALMVTSFVLSLLDSTRATNLRLRWFY 1684
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BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Match: A0A7S2IKK8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2IKK8_9DINO)

HSP 1 Score: 62.0 bits (149), Expect = 6.250e-10
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVYR 150
            SF F   +SAQ + L ++FVTGL L++ S++LN++ESTKD+N KL+WVYR
Sbjct:  386 SFAFSKHTSAQILCLVINFVTGLLLLIVSYILNVIESTKDVNEKLEWVYR 435
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BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Match: A0A812XR15_SYMMI (ABCA1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XR15_SYMMI)

HSP 1 Score: 61.2 bits (147), Expect = 8.050e-10
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVYR 150
            SF+F   +SAQ + L V+F+TGL LM+TS++LNL+ESTKD+N  L W+YR
Sbjct:  100 SFLFAKHTSAQILSLVVNFLTGLLLMLTSYILNLIESTKDVNESLMWIYR 149
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BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Match: A0A7S1UE30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE30_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-9
Identity = 28/50 (56.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVYR 150
            S+ F S S+AQN VLF +F+TGL LM+TSFVLN++E+T+++N  L+++YR
Sbjct:  814 SYGFSSHSTAQNFVLFFNFITGLCLMITSFVLNIIENTQEVNYSLRFLYR 863
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BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Match: A0A7S3YL20_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YL20_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 4.810e-9
Identity = 29/50 (58.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVYR 150
            SF+F+S S+AQN+ LF +F+TGLALM+TSFVL+L++ST+  N  LK ++R
Sbjct:  104 SFLFDSHSTAQNLTLFFNFLTGLALMITSFVLDLLDSTRAANLALKHLWR 153
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BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Match: A0A7S2S251_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S251_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.640e-9
Identity = 28/50 (56.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVYR 150
            SF+FES S+AQN+VL ++F+TGL L++ SFV++++ESTK  N  LK++YR
Sbjct: 1319 SFLFESHSTAQNIVLILNFITGLVLLIASFVMSVIESTKATNNTLKYLYR 1368
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BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Match: A0A813JRP4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JRP4_POLGL)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-8
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVYR 150
            SF+FE  S+AQ + L ++FVTGL LM+ S++LN + STKD+N  L W+YR
Sbjct:   40 SFLFEKHSTAQVLSLVINFVTGLLLMLVSYILNEISSTKDVNESLMWIYR 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76696.15668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL55_ECTSI4.590e-1886.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U9S9_9STRA9.570e-1166.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812GER7_9DINO1.780e-1060.00ABCA1 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A835ZC34_9STRA3.350e-1063.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2IKK8_9DINO6.250e-1056.00Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A812XR15_SYMMI8.050e-1058.00ABCA1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S1UE30_9STRA1.600e-956.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3YL20_HETAK4.810e-958.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2S251_9STRA7.640e-956.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A813JRP4_POLGL1.940e-854.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76696contigH-paniculata_contig76696:301..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog2880.D7FL55
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031090,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0098588,GO:0098805,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size152
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.1672325-CDS-H-paniculata_contig76696:300..4501622930948.1672325-CDS-H-paniculata_contig76696:300..450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76696 301..450 +
1691481523.4389014-CDS-H-paniculata_contig76696:300..4501691481523.4389014-CDS-H-paniculata_contig76696:300..450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76696 301..450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76696.15668.1prot_H-paniculata_contig76696.15668.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76696 301..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76696.15668.1

>prot_H-paniculata_contig76696.15668.1 ID=prot_H-paniculata_contig76696.15668.1|Name=mRNA_H-paniculata_contig76696.15668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
SFVFESASSAQNMVLFVSFVTGLALMVTSFVLNLVESTKDINAKLKWVYR
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mRNA from alignment at H-paniculata_contig76696:301..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76696.15668.1 ID=mRNA_H-paniculata_contig76696.15668.1|Name=mRNA_H-paniculata_contig76696.15668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=152bp|location=Sequence derived from alignment at H-paniculata_contig76696:301..452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTCGTATTCGAGTCTGCCTCCTCTGCTCAGAATATGGTACTGTTCGT
CAGTTTCGTGACTGGCCTTGCTTTGATGGTGACGTCCTTCGTGCTCAACC
TGGTAGAATCTACGAAGGATATCAACGCGAAATTGAAATGGGTGTACAGG
CT
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Coding sequence (CDS) from alignment at H-paniculata_contig76696:301..452+

>mRNA_H-paniculata_contig76696.15668.1 ID=mRNA_H-paniculata_contig76696.15668.1|Name=mRNA_H-paniculata_contig76696.15668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig76696:301..452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTCGTATTCGAGTCTGCCTCCTCTGCTCAGAATATGGTACTGTTCGT
CAGTTTCGTGACTGGCCTTGCTTTGATGGTGACGTCCTTCGTGCTCAACC
TGGTAGAATCTACGAAGGATATCAACGCGAAATTGAAATGGGTGTACAGG
AGCTTCGTATTCGAGTCTGCCTCCTCTGCTCAGAATATGGTACTGTTCGT
CAGTTTCGTGACTGGCCTTGCTTTGATGGTGACGTCCTTCGTGCTCAACC
TGGTAGAATCTACGAAGGATATCAACGCGAAATTGAAATGGGTGTACAGG
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