mRNA_H-paniculata_contig76682.15667.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76682.15667.1
Unique NamemRNA_H-paniculata_contig76682.15667.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig76682.15667.1 vs. uniprot
Match: A0A5N4AX79_PHOPY (CCHC-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AX79_PHOPY)

HSP 1 Score: 51.2 bits (121), Expect = 3.400e-5
Identity = 30/104 (28.85%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:    7 SSTSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRGPIATAGEGGLDVEGQGDVEGLIWTAEGAIRIILCN-VFYVPEASDSILSVERMVSQGMEAYFGSERRRL 315
            +S  H  WI+DSG T  H+T  R  F +  +  +  I     G + V+G+G  + +   ++  +R  + N V Y P    ++LSV R+V  G+   F  + R +
Sbjct:  268 NSMHHSGWIVDSGAT-RHITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEFNKKFREI 370
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BLAST of mRNA_H-paniculata_contig76682.15667.1 vs. uniprot
Match: A0A438GVH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GVH9_VITVI)

HSP 1 Score: 50.8 bits (120), Expect = 4.970e-5
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:   28 WIIDSGCTGHHLTPQRDLFQTFRQVVRGPIATAGEGGLDVEGQGDVEGLIWTAEGAIRIILCNVFYVPEASDSILSVERMVSQGMEAYF 294
            W+IDSGCT +H+TP+   F+   Q  +  +       +DV+G+G V     T    I+ IL +V +VPE S S+LSV +M+ +    +F
Sbjct:  291 WLIDSGCT-NHMTPELSYFKELDQSYKSKVKIGNGDLVDVKGKGVVSVETPTC---IKYIL-DVLFVPEISQSLLSVGQMLEKNYSLHF 374
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BLAST of mRNA_H-paniculata_contig76682.15667.1 vs. uniprot
Match: A0A1Y1LME8_PHOPY (CCHC-type domain-containing protein n=8 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LME8_PHOPY)

HSP 1 Score: 50.1 bits (118), Expect = 8.900e-5
Identity = 29/100 (29.00%), Postives = 49/100 (49.00%), Query Frame = 1 
Query:    7 SSTSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRGPIATAGEGGLDVEGQGDVEGLIWTAEGAIRIILCN-VFYVPEASDSILSVERMVSQGMEAYFGSE 303
            +S  H  WI+DSG T  H+T  R  F +  +  +  I     G + V+G+G  + +   ++  +R  + N V Y P    ++LSV R+V  G+   F  +
Sbjct:  267 NSMHHSGWIVDSGAT-RHITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEFNKK 365
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76682.15667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5N4AX79_PHOPY3.400e-528.85CCHC-type domain-containing protein n=1 Tax=Photin... [more]
A0A438GVH9_VITVI4.970e-535.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y1LME8_PHOPY8.900e-529.00CCHC-type domain-containing protein n=8 Tax=Photin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76682contigH-paniculata_contig76682:30..347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.1283855-CDS-H-paniculata_contig76682:29..3471622930948.1283855-CDS-H-paniculata_contig76682:29..347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76682 30..347 -
1691481523.4279966-CDS-H-paniculata_contig76682:29..3471691481523.4279966-CDS-H-paniculata_contig76682:29..347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76682 30..347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76682.15667.1prot_H-paniculata_contig76682.15667.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76682 30..347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76682.15667.1

>prot_H-paniculata_contig76682.15667.1 ID=prot_H-paniculata_contig76682.15667.1|Name=mRNA_H-paniculata_contig76682.15667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MESSTSHVHWIIDSGCTGHHLTPQRDLFQTFRQVVRGPIATAGEGGLDVE
GQGDVEGLIWTAEGAIRIILCNVFYVPEASDSILSVERMVSQGMEAYFGS
ERRRLY
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mRNA from alignment at H-paniculata_contig76682:30..347-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76682.15667.1 ID=mRNA_H-paniculata_contig76682.15667.1|Name=mRNA_H-paniculata_contig76682.15667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig76682:30..347- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCATCTACATCACACGTACACTGGATAATTGATTCGGGCTGCAC
CGGACATCACCTGACCCCGCAACGCGACCTCTTCCAAACTTTTCGCCAGG
TCGTACGTGGTCCCATTGCCACAGCGGGCGAGGGGGGGTTGGATGTAGAG
GGGCAAGGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAGCCATTCG
CATCATCCTCTGCAATGTATTTTATGTACCTGAAGCATCAGACAGTATTT
TATCGGTTGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTCG
GAACGAAGACGGTTGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig76682:30..347-

>mRNA_H-paniculata_contig76682.15667.1 ID=mRNA_H-paniculata_contig76682.15667.1|Name=mRNA_H-paniculata_contig76682.15667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig76682:30..347- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCATCTACATCACACGTACACTGGATAATTGATTCGGGCTGCAC
CGGACATCACCTGACCCCGCAACGCGACCTCTTCCAAACTTTTCGCCAGG
TCGTACGTGGTCCCATTGCCACAGCGGGCGAGGGGGGGTTGGATGTAGAG
GGGCAAGGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAGCCATTCG
CATCATCCTCTGCAATGTATTTTATGTACCTGAAGCATCAGACAGTATTT
TATCGGTTGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTCG
GAACGAAGACGGTTGTATATGGAGTCATCTACATCACACGTACACTGGAT
AATTGATTCGGGCTGCACCGGACATCACCTGACCCCGCAACGCGACCTCT
TCCAAACTTTTCGCCAGGTCGTACGTGGTCCCATTGCCACAGCGGGCGAG
GGGGGGTTGGATGTAGAGGGGCAAGGAGACGTGGAAGGTTTAATTTGGAC
TGCGGAAGGAGCCATTCGCATCATCCTCTGCAATGTATTTTATGTACCTG
AAGCATCAGACAGTATTTTATCGGTTGAGCGGATGGTGAGCCAAGGGATG
GAGGCGTATTTTGGTTCGGAACGAAGACGGTTGTAT
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