mRNA_H-paniculata_contig76667.15665.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76667.15665.1
Unique NamemRNA_H-paniculata_contig76667.15665.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Match: A0A7S1T3E5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T3E5_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 4.410e-10
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   16 QRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDE 147
            QRRKLDD+AW GVF+GY   SP++ +YNP  +    SRNV FDE
Sbjct:   48 QRRKLDDRAWKGVFVGYASESPAWLVYNPVTRRAVSSRNVVFDE 91          
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Match: A0A151S498_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S498_CAJCA)

HSP 1 Score: 59.3 bits (142), Expect = 1.200e-8
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   16 QRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDE 147
            +R KLD K+  GVFLGY+  S  YRIYNP +K + +SRNV+FDE
Sbjct:   56 KRDKLDQKSKVGVFLGYNNNSKGYRIYNPTSKKILVSRNVKFDE 99          
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Match: UPI00098D91DB (uncharacterized protein LOC109813272 n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098D91DB)

HSP 1 Score: 59.3 bits (142), Expect = 1.210e-8
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   16 QRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDE 147
            +R KLD K+  GVFLGY+  S  YRIYNP +K + +SRNV+FDE
Sbjct:  102 KRDKLDQKSKVGVFLGYNNNSKGYRIYNPTSKKILVSRNVKFDE 145          
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Match: UPI0003DE8D8D (uncharacterized protein LOC102660714 n=1 Tax=Glycine max TaxID=3847 RepID=UPI0003DE8D8D)

HSP 1 Score: 58.5 bits (140), Expect = 1.350e-8
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   13 QQRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDEE 150
            ++R KLDDK+   +F+GYD  S  Y++YNP NK + +SR+V FDEE
Sbjct:  163 ERREKLDDKSERFIFIGYDSISKGYKLYNPNNKKMVISRDVVFDEE 208          
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 58.9 bits (141), Expect = 1.700e-8
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    7 QSQQRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDEEYFVKGHRGQQEH 186
            Q Q+RRKLDDKA  G+FLGYD  S  YRIY  +NK + +SR V+F+E       R  +EH
Sbjct:  185 QKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK-IMISRTVKFNENPLPYAKREAKEH 243          
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Match: UPI0009047AD4 (uncharacterized protein LOC109237395 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009047AD4)

HSP 1 Score: 58.5 bits (140), Expect = 2.190e-8
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   13 QQRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDEE 150
            ++R KLDDK+   VF+GYD+ S  Y++YNP+N  V +SR+V FDE+
Sbjct:  182 EKRSKLDDKSERYVFIGYDQSSKGYKLYNPKNGKVTISRDVEFDED 227          
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Match: A0A314LHB3_NICAT (Putative mitochondrial protein n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A314LHB3_NICAT)

HSP 1 Score: 58.5 bits (140), Expect = 2.420e-8
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   13 QQRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDEE 150
            ++R KLDDK+   VF+GYD+ S  Y++YNP+N  V +SR+V FDE+
Sbjct:  100 EKRSKLDDKSERYVFIGYDQSSKGYKLYNPKNGKVTISRDVEFDED 145          
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Match: A0A1U7VFB3_NICSY (uncharacterized protein LOC104215483 n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7VFB3_NICSY)

HSP 1 Score: 58.2 bits (139), Expect = 2.750e-8
Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    7 QSQQRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDEEYFVKGHRGQQEHDGTRNMED 210
            + ++R KLDDK+   VF+GY + S  Y++YNP+N  V +SR+V FDE+   +    +QE+  + + ED
Sbjct:  220 KDEKRSKLDDKSERYVFVGYGQSSKGYKLYNPKNDKVTISRDVEFDEDNVCEWKSKEQEYSFSPSFED 287          
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 57.4 bits (137), Expect = 6.340e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   13 QQRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDE 147
            Q R+KLDD+    +F+GYDE S +YR+YNP  K + +SR+V FDE
Sbjct:  524 QTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDE 568          
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 57.4 bits (137), Expect = 6.350e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   13 QQRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDE 147
            Q R+KLDD+    +F+GYDE S +YR+YNP  K + +SR+V FDE
Sbjct:  466 QTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDE 510          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76667.15665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1T3E5_9CHLO4.410e-1059.09Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A151S498_CAJCA1.200e-859.09Retrovirus-related Pol polyprotein from transposon... [more]
UPI00098D91DB1.210e-859.09uncharacterized protein LOC109813272 n=1 Tax=Cajan... [more]
UPI0003DE8D8D1.350e-852.17uncharacterized protein LOC102660714 n=1 Tax=Glyci... [more]
A0A4Y2LAF7_ARAVE1.700e-851.67Retrovirus-related Pol polyprotein from transposon... [more]
UPI0009047AD42.190e-852.17uncharacterized protein LOC109237395 n=1 Tax=Nicot... [more]
A0A314LHB3_NICAT2.420e-852.17Putative mitochondrial protein n=1 Tax=Nicotiana a... [more]
A0A1U7VFB3_NICSY2.750e-839.71uncharacterized protein LOC104215483 n=1 Tax=Nicot... [more]
A0A6A3C4D2_HIBSY6.340e-853.33FAD-binding Berberine family protein n=1 Tax=Hibis... [more]
A0A6A3ACL1_HIBSY6.350e-853.33Putative cyclic nucleotide-gated ion channel 8 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76667contigH-paniculata_contig76667:90..299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.7754111-CDS-H-paniculata_contig76667:89..2991622930947.7754111-CDS-H-paniculata_contig76667:89..299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76667 90..299 -
1691481523.2536528-CDS-H-paniculata_contig76667:89..2991691481523.2536528-CDS-H-paniculata_contig76667:89..299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76667 90..299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76667.15665.1prot_H-paniculata_contig76667.15665.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76667 90..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76667.15665.1

>prot_H-paniculata_contig76667.15665.1 ID=prot_H-paniculata_contig76667.15665.1|Name=mRNA_H-paniculata_contig76667.15665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MFQSQQRRKLDDKAWAGVFLGYDECSPSYRIYNPENKSVQLSRNVRFDEE
YFVKGHRGQQEHDGTRNMED
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mRNA from alignment at H-paniculata_contig76667:90..299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76667.15665.1 ID=mRNA_H-paniculata_contig76667.15665.1|Name=mRNA_H-paniculata_contig76667.15665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig76667:90..299- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCAGTCGCAGCAGAGACGCAAGCTCGATGACAAAGCATGGGCGGG GGTGTTTCTGGGGTACGACGAGTGCAGCCCGAGTTATCGCATATATAACC CGGAAAACAAGAGCGTCCAATTGAGCAGGAACGTGAGATTTGACGAAGAG TACTTCGTAAAAGGTCATCGCGGACAGCAGGAGCACGACGGGACGCGCAA CATGGAAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig76667:90..299-

>mRNA_H-paniculata_contig76667.15665.1 ID=mRNA_H-paniculata_contig76667.15665.1|Name=mRNA_H-paniculata_contig76667.15665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig76667:90..299- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCAGTCGCAGCAGAGACGCAAGCTCGATGACAAAGCATGGGCGGG
GGTGTTTCTGGGGTACGACGAGTGCAGCCCGAGTTATCGCATATATAACC
CGGAAAACAAGAGCGTCCAATTGAGCAGGAACGTGAGATTTGACGAAGAG
TACTTCGTAAAAGGTCATCGCGGACAGCAGGAGCACGACGGGACGCGCAA
CATGGAAGATATGTTCCAGTCGCAGCAGAGACGCAAGCTCGATGACAAAG
CATGGGCGGGGGTGTTTCTGGGGTACGACGAGTGCAGCCCGAGTTATCGC
ATATATAACCCGGAAAACAAGAGCGTCCAATTGAGCAGGAACGTGAGATT
TGACGAAGAGTACTTCGTAAAAGGTCATCGCGGACAGCAGGAGCACGACG
GGACGCGCAACATGGAAGAT
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